Wall clock time and date at job start Tue Mar 31 2020 21:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.59044 * 2 1 4 4 C 1.53191 * 109.58497 * 120.42834 * 2 1 3 5 5 C 1.53039 * 109.31235 * 174.41766 * 4 2 1 6 6 C 1.53043 * 109.54084 * 298.63544 * 5 4 2 7 7 H 1.09003 * 109.49635 * 181.34485 * 6 5 4 8 8 N 1.46490 * 109.49673 * 301.41454 * 6 5 4 9 9 C 1.34785 * 119.99896 * 204.99846 * 8 6 5 10 10 O 1.21276 * 119.99794 * 0.02562 * 9 8 6 11 11 C 1.50695 * 119.99809 * 179.97438 * 9 8 6 12 12 C 1.53001 * 109.46964 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47178 * 179.97438 * 12 11 9 14 14 N 1.46499 * 109.47021 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00162 * 180.02562 * 14 13 12 16 16 O 1.21289 * 119.99983 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00288 * 180.02562 * 15 14 13 18 18 C 1.53002 * 117.49588 * 248.74399 * 17 15 14 19 19 C 1.53007 * 117.49764 * 180.08947 * 17 15 14 20 20 C 1.52761 * 109.38087 * 61.23985 * 6 5 4 21 21 N 1.46925 * 109.00624 * 305.58796 * 20 6 5 22 22 C 1.36938 * 120.63270 * 233.58143 * 21 20 6 23 23 H 1.07999 * 120.00507 * 150.34149 * 22 21 20 24 24 C 1.38811 * 119.99872 * 330.35814 * 22 21 20 25 25 N 1.31623 * 120.00118 * 336.37493 * 24 22 21 26 26 Si 1.86808 * 120.00116 * 156.10806 * 24 22 21 27 27 H 1.48497 * 109.47033 * 59.99395 * 26 24 22 28 28 H 1.48504 * 109.46904 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47002 * 299.99415 * 26 24 22 30 30 H 1.08997 * 109.47558 * 180.28552 * 1 2 3 31 31 H 1.09003 * 109.46889 * 300.28187 * 1 2 3 32 32 H 1.09004 * 109.47443 * 60.27968 * 1 2 3 33 33 H 1.09000 * 109.50000 * 294.37128 * 4 2 1 34 34 H 1.09004 * 109.49794 * 54.46916 * 4 2 1 35 35 H 1.09003 * 109.46006 * 58.65917 * 5 4 2 36 36 H 1.09003 * 109.46444 * 178.62451 * 5 4 2 37 37 H 0.97004 * 120.00127 * 24.99449 * 8 6 5 38 38 H 1.08999 * 109.47526 * 300.00037 * 11 9 8 39 39 H 1.08997 * 109.47184 * 60.00282 * 11 9 8 40 40 H 1.08999 * 109.47147 * 300.00413 * 12 11 9 41 41 H 1.08997 * 109.46822 * 60.00204 * 12 11 9 42 42 H 1.08999 * 109.47474 * 300.00280 * 13 12 11 43 43 H 1.08997 * 109.47021 * 60.00395 * 13 12 11 44 44 H 0.97003 * 120.00113 * 0.02562 * 14 13 12 45 45 H 1.08994 * 115.54892 * 34.41424 * 17 15 14 46 46 H 1.08996 * 117.50287 * 0.02562 * 18 17 15 47 47 H 1.09007 * 117.49463 * 145.01792 * 18 17 15 48 48 H 1.08999 * 117.49396 * 214.97781 * 19 17 15 49 49 H 1.08997 * 117.50141 * 359.97384 * 19 17 15 50 50 H 1.08998 * 109.50904 * 185.70904 * 20 6 5 51 51 H 1.08999 * 109.43256 * 65.41941 * 20 6 5 52 52 H 0.97004 * 119.99620 * 353.98949 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 3.5674 -0.8496 1.1690 6 6 3.9568 -1.6658 -0.0656 7 1 5.0411 -1.7701 -0.1056 8 7 3.3404 -2.9925 0.0110 9 6 3.8969 -4.0328 -0.6407 10 8 4.9082 -3.8706 -1.2901 11 6 3.2631 -5.3977 -0.5615 12 6 4.0862 -6.3908 -1.3843 13 6 3.4431 -7.7767 -1.3033 14 7 4.2309 -8.7274 -2.0918 15 6 3.8508 -10.0183 -2.1673 16 8 2.8561 -10.3927 -1.5829 17 6 4.6615 -10.9964 -2.9778 18 6 4.0292 -11.5490 -4.2567 19 6 4.1768 -12.4468 -3.0258 20 6 3.4644 -0.9504 -1.3223 21 7 2.0225 -0.6981 -1.1953 22 6 1.1535 -1.1107 -2.1699 23 1 0.1376 -1.3714 -1.9125 24 6 1.5785 -1.1942 -3.4887 25 7 2.6015 -0.4738 -3.8974 26 14 0.7034 -2.3347 -4.6817 27 1 -0.7236 -1.9381 -4.7890 28 1 1.3449 -2.2401 -6.0177 29 1 0.7930 -3.7318 -4.1868 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3633 0.5182 0.8875 32 1 -0.3634 0.5095 -0.8925 33 1 1.7660 -0.1696 2.1366 34 1 1.6028 -1.7270 1.2891 35 1 4.0061 0.1458 1.0995 36 1 3.9378 -1.3477 2.0651 37 1 2.5317 -3.1223 0.5308 38 1 3.2322 -5.7242 0.4780 39 1 2.2488 -5.3508 -0.9578 40 1 4.1167 -6.0641 -2.4237 41 1 5.1006 -6.4377 -0.9884 42 1 3.4130 -8.1032 -0.2638 43 1 2.4285 -7.7301 -1.6990 44 1 5.0262 -8.4279 -2.5595 45 1 5.7379 -10.8250 -2.9819 46 1 3.0270 -11.2049 -4.5121 47 1 4.6898 -11.7416 -5.1022 48 1 4.9344 -13.2297 -3.0618 49 1 3.2717 -12.6937 -2.4708 50 1 3.6502 -1.5771 -2.1944 51 1 3.9928 -0.0032 -1.4310 52 1 3.0032 0.1791 -3.3029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132079253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:16 Heat of formation + Delta-G solvation = -69.049881 kcal Electronic energy + Delta-G solvation = -29955.066164 eV Core-core repulsion = 25954.139819 eV Total energy + Delta-G solvation = -4000.926346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.15695 -40.91755 -39.37080 -37.42938 -36.46729 -35.88246 -34.68220 -33.78894 -32.17950 -31.56133 -28.66258 -27.73146 -26.63764 -25.07236 -23.81319 -23.32818 -23.02723 -22.30433 -21.67304 -20.86187 -20.40809 -18.85753 -18.43610 -18.21573 -17.11669 -17.05039 -16.94592 -16.37638 -16.14115 -15.81964 -15.78993 -15.46979 -15.28468 -15.13047 -14.91277 -14.64532 -14.48952 -14.07430 -13.55735 -13.52222 -13.32566 -13.15676 -13.09998 -12.93155 -12.67725 -12.53255 -12.51873 -12.44958 -12.31346 -12.02081 -11.91764 -11.81686 -11.62655 -11.55222 -11.46178 -11.31797 -11.04971 -10.99365 -10.76473 -10.42551 -10.15371 -9.96038 -8.80610 -8.12229 -5.31697 1.44379 1.52351 1.59801 1.76233 1.76974 2.05264 2.45996 2.65568 2.91954 3.28573 3.51786 3.65429 3.74096 3.86072 3.93354 3.96141 3.97756 4.00728 4.02330 4.10453 4.21497 4.33135 4.37536 4.51788 4.56125 4.59890 4.66438 4.69513 4.72470 4.73631 4.78753 4.91218 4.94065 5.00701 5.02401 5.04450 5.09501 5.15187 5.18638 5.21840 5.23227 5.29336 5.40183 5.47982 5.57219 5.69250 5.98002 6.45699 6.49402 6.70970 7.13968 7.18191 7.41138 7.86770 8.32848 9.09795 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.002645 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.664553 B =10584.291923 C =11746.417484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.154 3.846 3 H 0.010 0.990 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.133 3.867 7 H 0.066 0.934 8 N -0.696 5.696 9 C 0.504 3.496 10 O -0.593 6.593 11 C -0.129 4.129 12 C -0.103 4.103 13 C 0.125 3.875 14 N -0.718 5.718 15 C 0.534 3.466 16 O -0.589 6.589 17 C -0.201 4.201 18 C -0.147 4.147 19 C -0.150 4.150 20 C 0.152 3.848 21 N -0.600 5.600 22 C -0.325 4.325 23 H 0.063 0.937 24 C -0.082 4.082 25 N -0.953 5.953 26 Si 1.099 2.901 27 H -0.273 1.273 28 H -0.302 1.302 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.408 0.592 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.415 0.585 45 H 0.152 0.848 46 H 0.084 0.916 47 H 0.131 0.869 48 H 0.129 0.871 49 H 0.085 0.915 50 H 0.036 0.964 51 H -0.003 1.003 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -16.270 9.902 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.049 3.951 3 H 0.028 0.972 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.027 3.973 7 H 0.084 0.916 8 N -0.347 5.347 9 C 0.292 3.708 10 O -0.475 6.475 11 C -0.170 4.170 12 C -0.141 4.141 13 C 0.001 3.999 14 N -0.369 5.369 15 C 0.322 3.678 16 O -0.470 6.470 17 C -0.222 4.222 18 C -0.184 4.184 19 C -0.187 4.187 20 C 0.024 3.976 21 N -0.325 5.325 22 C -0.456 4.456 23 H 0.080 0.920 24 C -0.277 4.277 25 N -0.596 5.596 26 Si 0.926 3.074 27 H -0.199 1.199 28 H -0.229 1.229 29 H -0.209 1.209 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.049 0.951 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.245 0.755 38 H 0.146 0.854 39 H 0.119 0.881 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.252 0.748 45 H 0.170 0.830 46 H 0.103 0.897 47 H 0.149 0.851 48 H 0.147 0.853 49 H 0.104 0.896 50 H 0.055 0.945 51 H 0.015 0.985 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 3.444 -16.965 8.343 19.217 hybrid contribution 0.086 1.501 0.917 1.761 sum 3.530 -15.464 9.260 18.367 Atomic orbital electron populations 1.21688 0.94734 1.01309 1.00499 1.20772 0.94199 0.92976 0.87150 0.97182 1.21936 0.94789 1.01134 0.97821 1.21659 0.97153 0.99834 0.96140 1.21227 0.96373 0.83049 0.96701 0.91559 1.45799 1.29735 1.07802 1.51350 1.21220 0.83988 0.87747 0.77810 1.90654 1.27729 1.86249 1.42818 1.21542 1.00839 0.90019 1.04558 1.21351 0.99871 0.92143 1.00770 1.21284 0.94791 0.87478 0.96301 1.45921 1.30770 1.08338 1.51852 1.20297 0.84352 0.82913 0.80244 1.90673 1.28899 1.79172 1.48238 1.22303 1.01164 0.95922 1.02823 1.23050 1.02174 1.01711 0.91495 1.23025 1.03703 0.91335 1.00622 1.20981 0.85002 0.95142 0.96441 1.44293 1.01872 1.65922 1.20439 1.20085 0.96169 1.40947 0.88363 0.91979 1.26886 1.00645 1.02134 0.98084 1.70887 1.27838 1.22854 1.38024 0.83054 0.75024 0.75192 0.74153 1.19874 1.22859 1.20858 0.92981 0.90678 0.95087 0.89243 0.91601 0.91129 0.89280 0.75532 0.85411 0.88132 0.92442 0.90233 0.90655 0.92299 0.74842 0.83019 0.89747 0.85098 0.85336 0.89612 0.94495 0.98475 0.93940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.24 7.95 71.98 0.57 -3.67 16 2 C 0.15 5.71 3.50 44.97 0.16 5.87 16 3 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 4 C -0.12 -3.19 5.21 30.67 0.16 -3.03 16 5 C -0.11 -3.00 5.59 30.62 0.17 -2.83 16 6 C 0.13 4.81 2.81 44.93 0.13 4.94 16 7 H 0.07 2.53 7.58 -2.39 -0.02 2.51 16 8 N -0.70 -22.53 4.91 -442.86 -2.17 -24.70 16 9 C 0.50 17.25 7.79 87.65 0.68 17.93 16 10 O -0.59 -25.57 15.64 -3.02 -0.05 -25.61 16 11 C -0.13 -3.10 5.70 29.85 0.17 -2.93 16 12 C -0.10 -2.40 4.62 30.60 0.14 -2.26 16 13 C 0.13 2.67 5.67 86.38 0.49 3.16 16 14 N -0.72 -14.20 5.56 -463.06 -2.57 -16.78 16 15 C 0.53 12.21 7.61 87.66 0.67 12.87 16 16 O -0.59 -18.44 16.26 -3.06 -0.05 -18.49 16 17 C -0.20 -3.05 6.19 -11.54 -0.07 -3.12 16 18 C -0.15 -1.96 10.24 30.62 0.31 -1.64 16 19 C -0.15 -2.12 10.05 30.62 0.31 -1.81 16 20 C 0.15 7.22 4.25 86.22 0.37 7.58 16 21 N -0.60 -28.03 2.75 -676.06 -1.86 -29.89 16 22 C -0.33 -17.20 8.48 84.03 0.71 -16.49 16 23 H 0.06 3.21 6.28 -2.91 -0.02 3.19 16 24 C -0.08 -4.67 4.71 84.86 0.40 -4.27 16 25 N -0.95 -59.97 12.46 21.65 0.27 -59.70 16 26 Si 1.10 52.21 29.98 68.60 2.06 54.27 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 29 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 30 H 0.05 1.76 7.44 -2.39 -0.02 1.74 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.03 1.21 7.62 -2.38 -0.02 1.19 16 33 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.07 1.70 6.40 -2.38 -0.02 1.68 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.41 11.11 6.77 -92.71 -0.63 10.48 16 38 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 41 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.42 6.26 8.47 -92.71 -0.79 5.47 16 45 H 0.15 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 48 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.09 1.61 7.67 -2.39 -0.02 1.60 16 50 H 0.04 2.12 6.40 -2.39 -0.02 2.11 16 51 H 0.00 -0.13 7.84 -2.39 -0.02 -0.15 16 52 H 0.25 16.13 6.69 -92.71 -0.62 15.50 16 Total: -1.00 -79.67 410.45 0.64 -79.02 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: -0.34 Total: 31.58 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 5.37 Total: 10.31 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -6.34 Total: -131.08 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -0.10 Total: -44.10 kcal Atomic # 14 Polarization: 52.21 SS G_CDS: 2.06 Total: 54.27 kcal Total: -79.67 0.64 -79.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132079253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.972 kcal (2) G-P(sol) polarization free energy of solvation -79.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds