Wall clock time and date at job start Tue Mar 31 2020 21:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00337 * 2 1 4 4 C 1.53002 * 109.46848 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47565 * 240.00152 * 3 2 1 6 6 C 1.50709 * 109.47003 * 119.99800 * 3 2 1 7 7 O 1.21275 * 119.99770 * 0.02562 * 6 3 2 8 8 N 1.34773 * 119.99562 * 180.02562 * 6 3 2 9 9 C 1.46503 * 119.99571 * 180.02562 * 8 6 3 10 10 H 1.08993 * 109.50783 * 35.07678 * 9 8 6 11 11 C 1.53120 * 109.50149 * 274.99841 * 9 8 6 12 12 C 1.53121 * 109.16264 * 297.71422 * 11 9 8 13 13 C 1.53046 * 109.27812 * 302.34806 * 12 11 9 14 14 H 1.09006 * 109.45023 * 299.16659 * 13 12 11 15 15 C 1.52991 * 109.46317 * 179.19221 * 13 12 11 16 16 N 1.46845 * 109.51969 * 59.17606 * 13 12 11 17 17 C 1.46906 * 110.99692 * 174.16665 * 16 13 12 18 18 C 1.50699 * 109.47177 * 64.61438 * 17 16 13 19 19 O 1.21288 * 120.00219 * 354.33290 * 18 17 16 20 20 N 1.34780 * 119.99835 * 174.33771 * 18 17 16 21 21 C 1.37090 * 120.00059 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00076 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00174 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99734 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00111 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46955 * 180.02562 * 25 23 21 27 27 H 1.48500 * 109.47224 * 300.00269 * 25 23 21 28 28 H 1.48504 * 109.46963 * 60.00753 * 25 23 21 29 29 C 1.46845 * 111.20064 * 298.25485 * 16 13 12 30 30 H 1.07997 * 119.99530 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.99925 * 180.02562 * 1 2 3 32 32 H 1.08007 * 120.00027 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47264 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47146 * 299.99642 * 4 3 2 35 35 H 1.08997 * 109.47332 * 59.99534 * 4 3 2 36 36 H 1.08999 * 109.46498 * 299.99843 * 5 3 2 37 37 H 1.09004 * 109.46968 * 59.99537 * 5 3 2 38 38 H 1.08996 * 109.47110 * 180.02562 * 5 3 2 39 39 H 0.96991 * 120.00603 * 0.02562 * 8 6 3 40 40 H 1.08998 * 109.52496 * 177.81196 * 11 9 8 41 41 H 1.09003 * 109.57625 * 57.65110 * 11 9 8 42 42 H 1.08995 * 109.50934 * 182.40455 * 12 11 9 43 43 H 1.09003 * 109.53464 * 62.30108 * 12 11 9 44 44 H 1.08996 * 109.47567 * 293.10216 * 15 13 12 45 45 H 1.09004 * 109.47477 * 53.09877 * 15 13 12 46 46 H 1.08993 * 109.47367 * 173.09745 * 15 13 12 47 47 H 1.09001 * 109.46482 * 304.61796 * 17 16 13 48 48 H 1.08990 * 109.47384 * 184.62079 * 17 16 13 49 49 H 0.97006 * 119.99842 * 359.97438 * 20 18 17 50 50 H 0.97001 * 120.00422 * 359.97438 * 24 23 21 51 51 H 1.09005 * 109.46394 * 181.76060 * 29 16 13 52 52 H 1.09004 * 109.46500 * 301.73525 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0694 2.4680 0.0006 5 6 2.9432 1.3862 -1.2492 6 6 2.9300 1.3849 1.2306 7 8 2.9353 0.4717 2.0286 8 7 3.6988 2.4710 1.4440 9 6 4.5414 2.5483 2.6400 10 1 4.9190 1.5554 2.8840 11 6 3.7160 3.0840 3.8131 12 6 3.2392 4.5019 3.4863 13 6 4.4524 5.3892 3.1983 14 1 5.0923 5.4264 4.0800 15 6 3.9797 6.8023 2.8515 16 7 5.2085 4.8349 2.0681 17 6 6.3016 5.7340 1.6744 18 6 7.3001 5.8330 2.7988 19 8 7.0698 5.2993 3.8633 20 7 8.4492 6.5148 2.6215 21 6 9.3578 6.6045 3.6441 22 1 9.1527 6.1292 4.5919 23 6 10.5426 7.3070 3.4611 24 7 10.7919 7.8858 2.3080 25 14 11.7804 7.4298 4.8547 26 1 12.9511 8.2270 4.4082 27 1 11.1468 8.0930 6.0226 28 1 12.2273 6.0674 5.2413 29 6 5.7169 3.4923 2.3767 30 1 -0.5399 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.6143 3.4120 0.0011 34 1 0.4424 2.4105 -0.8891 35 1 0.4430 2.4101 0.8908 36 1 3.6515 0.5577 -1.2491 37 1 2.3165 1.3285 -2.1392 38 1 3.4886 2.3299 -1.2489 39 1 3.6942 3.2015 0.8060 40 1 4.3318 3.1050 4.7123 41 1 2.8533 2.4384 3.9776 42 1 2.6869 4.9049 4.3351 43 1 2.5914 4.4756 2.6100 44 1 3.4419 6.7831 1.9036 45 1 3.3181 7.1672 3.6371 46 1 4.8421 7.4633 2.7666 47 1 5.8982 6.7233 1.4585 48 1 6.7935 5.3402 0.7852 49 1 8.6335 6.9415 1.7700 50 1 10.1490 7.8224 1.5844 51 1 6.2985 3.1213 1.5327 52 1 6.3509 3.5386 3.2622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132217631.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:25 Heat of formation + Delta-G solvation = -55.567356 kcal Electronic energy + Delta-G solvation = -31097.261713 eV Core-core repulsion = 27096.920014 eV Total energy + Delta-G solvation = -4000.341699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61846 -39.56773 -37.70857 -36.37889 -34.87367 -34.17646 -32.58051 -31.71061 -31.19768 -30.30885 -27.72210 -27.58620 -26.40470 -24.43807 -24.21931 -22.85290 -21.73550 -20.92757 -19.76545 -19.03060 -18.75786 -17.95339 -17.17733 -16.44700 -16.11597 -15.68664 -15.39913 -15.11839 -14.89255 -14.56561 -14.41578 -14.34472 -13.90924 -13.74823 -13.71619 -13.34443 -13.00103 -12.62948 -12.60683 -12.56948 -12.35359 -12.08932 -12.00288 -11.81884 -11.78197 -11.47380 -11.39565 -11.31244 -11.22165 -10.97870 -10.95223 -10.56954 -10.41425 -10.26584 -10.00405 -9.94070 -9.85856 -9.56931 -9.43907 -9.33992 -8.90912 -8.12203 -7.54525 -6.84470 -3.97947 2.05209 2.67955 3.22956 3.29422 3.32030 3.49215 3.71227 4.15096 4.19515 4.34677 4.54894 4.69611 4.74755 4.87624 4.97096 4.98724 5.12134 5.14844 5.17433 5.27032 5.27783 5.39727 5.46502 5.48265 5.55485 5.66319 5.68394 5.69935 5.72057 5.83315 5.85567 5.89048 5.91049 5.91402 6.01053 6.04461 6.11680 6.20307 6.27117 6.33037 6.38587 6.40764 6.54518 6.62218 6.75038 7.21192 7.35505 7.65303 7.69861 7.99111 8.30595 8.48704 8.69363 9.37370 9.75551 10.58436 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.002529 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.963490 B =11067.903471 C =11203.950198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 C -0.057 4.057 4 C -0.143 4.143 5 C -0.137 4.137 6 C 0.522 3.478 7 O -0.545 6.545 8 N -0.707 5.707 9 C 0.154 3.846 10 H 0.086 0.914 11 C -0.129 4.129 12 C -0.103 4.103 13 C 0.061 3.939 14 H 0.085 0.915 15 C -0.143 4.143 16 N -0.508 5.508 17 C 0.037 3.963 18 C 0.409 3.591 19 O -0.587 6.587 20 N -0.568 5.568 21 C -0.384 4.384 22 H 0.098 0.902 23 C -0.008 4.008 24 N -0.897 5.897 25 Si 1.090 2.910 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.031 3.969 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.406 0.594 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.094 0.906 48 H 0.085 0.915 49 H 0.376 0.624 50 H 0.262 0.738 51 H 0.070 0.930 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.994 -7.840 -7.904 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.138 4.138 3 C -0.060 4.060 4 C -0.200 4.200 5 C -0.194 4.194 6 C 0.308 3.692 7 O -0.422 6.422 8 N -0.359 5.359 9 C 0.049 3.951 10 H 0.104 0.896 11 C -0.168 4.168 12 C -0.141 4.141 13 C -0.047 4.047 14 H 0.103 0.897 15 C -0.201 4.201 16 N -0.232 5.232 17 C -0.095 4.095 18 C 0.195 3.805 19 O -0.474 6.474 20 N -0.205 5.205 21 C -0.514 4.514 22 H 0.116 0.884 23 C -0.211 4.211 24 N -0.535 5.535 25 Si 0.915 3.085 26 H -0.203 1.203 27 H -0.210 1.210 28 H -0.210 1.210 29 C -0.097 4.097 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.242 0.758 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.112 0.888 48 H 0.103 0.897 49 H 0.209 0.791 50 H 0.073 0.927 51 H 0.088 0.912 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.941 -8.240 -6.576 19.953 hybrid contribution -0.793 0.050 -0.590 0.989 sum -17.734 -8.190 -7.166 20.807 Atomic orbital electron populations 1.23935 0.95890 1.02111 1.01558 1.22510 0.95586 0.96714 0.98953 1.19909 0.95783 0.95771 0.94527 1.21939 0.98742 0.96552 1.02767 1.21809 0.99194 1.02791 0.95617 1.20386 0.79942 0.82105 0.86801 1.90677 1.66052 1.38269 1.47217 1.46032 1.44077 1.20408 1.25376 1.21003 0.90152 0.99180 0.84718 0.89593 1.21920 1.00170 0.96636 0.98072 1.21539 0.97190 0.94533 1.00842 1.21897 0.94708 0.93226 0.94824 0.89714 1.21856 1.00932 0.96079 1.01234 1.62429 1.21892 1.01835 1.37041 1.22112 0.91511 0.98727 0.97128 1.20999 0.84312 0.84699 0.90475 1.90409 1.77549 1.50989 1.28423 1.42139 1.17157 1.46609 1.14545 1.20534 0.99882 1.35358 0.95577 0.88378 1.26526 0.98218 0.93874 1.02444 1.70908 1.37640 1.41840 1.03136 0.83152 0.75162 0.76903 0.73237 1.20328 1.20988 1.20968 1.22596 0.95639 0.88294 1.03215 0.87961 0.88395 0.86997 0.91586 0.91213 0.91836 0.91933 0.91377 0.91559 0.75772 0.90993 0.91876 0.92100 0.91992 0.92495 0.92668 0.92729 0.88838 0.89658 0.79112 0.92678 0.91195 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 13.70 29.01 0.40 -1.29 16 2 C -0.12 -1.18 8.00 -36.02 -0.29 -1.47 16 3 C -0.06 -0.54 0.84 -156.81 -0.13 -0.67 16 4 C -0.14 -1.10 7.02 37.16 0.26 -0.84 16 5 C -0.14 -1.06 8.35 37.16 0.31 -0.75 16 6 C 0.52 6.60 6.44 -10.98 -0.07 6.53 16 7 O -0.54 -9.00 15.70 5.56 0.09 -8.91 16 8 N -0.71 -8.29 4.19 -53.73 -0.23 -8.52 16 9 C 0.15 2.12 2.81 -67.85 -0.19 1.93 16 10 H 0.09 1.30 7.58 -51.93 -0.39 0.90 16 11 C -0.13 -1.78 5.67 -26.61 -0.15 -1.93 16 12 C -0.10 -1.32 5.20 -26.64 -0.14 -1.46 16 13 C 0.06 0.91 2.05 -67.72 -0.14 0.77 16 14 H 0.09 1.61 5.69 -51.93 -0.30 1.32 16 15 C -0.14 -1.90 8.52 37.15 0.32 -1.58 16 16 N -0.51 -7.31 4.17 -228.12 -0.95 -8.26 16 17 C 0.04 0.59 5.45 -4.97 -0.03 0.56 16 18 C 0.41 8.80 7.18 -10.98 -0.08 8.72 16 19 O -0.59 -14.30 11.22 5.55 0.06 -14.23 16 20 N -0.57 -13.51 5.28 -10.96 -0.06 -13.57 16 21 C -0.38 -10.39 9.68 -14.94 -0.14 -10.53 16 22 H 0.10 2.83 7.16 -52.48 -0.38 2.45 16 23 C -0.01 -0.20 5.50 -17.47 -0.10 -0.29 16 24 N -0.90 -24.48 13.68 55.50 0.76 -23.72 16 25 Si 1.09 23.77 29.92 -169.99 -5.09 18.69 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 28 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 29 C 0.03 0.47 4.59 -3.83 -0.02 0.45 16 30 H 0.10 0.76 5.69 -52.49 -0.30 0.46 16 31 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.07 0.47 7.56 -51.93 -0.39 0.08 16 34 H 0.07 0.44 7.50 -51.93 -0.39 0.05 16 35 H 0.06 0.53 7.50 -51.93 -0.39 0.14 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.48 7.57 -51.93 -0.39 0.08 16 39 H 0.41 4.25 7.01 -40.82 -0.29 3.96 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.74 7.73 -51.93 -0.40 0.34 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.80 6.65 -51.93 -0.35 0.46 16 47 H 0.09 1.37 6.10 -51.93 -0.32 1.05 16 48 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.38 8.32 6.73 -40.82 -0.27 8.04 16 50 H 0.26 6.84 6.78 -40.82 -0.28 6.56 16 51 H 0.07 1.03 8.12 -51.93 -0.42 0.60 16 52 H 0.09 1.70 5.68 -51.93 -0.29 1.40 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -31.21 398.76 -8.16 -39.37 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -8.57 Total: 15.01 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -0.19 Total: -1.86 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.48 Total: -54.07 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.15 Total: -23.15 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -5.09 Total: 18.69 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.21 -8.16 -39.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132217631.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.199 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds