Wall clock time and date at job start Tue Mar 31 2020 21:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00337 * 2 1 4 4 C 1.53002 * 109.46848 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47565 * 240.00152 * 3 2 1 6 6 C 1.50709 * 109.47003 * 119.99800 * 3 2 1 7 7 O 1.21275 * 119.99770 * 0.02562 * 6 3 2 8 8 N 1.34773 * 119.99562 * 180.02562 * 6 3 2 9 9 C 1.46503 * 119.99571 * 180.02562 * 8 6 3 10 10 H 1.08993 * 109.50783 * 35.07678 * 9 8 6 11 11 C 1.53120 * 109.50149 * 274.99841 * 9 8 6 12 12 C 1.53121 * 109.16264 * 297.71422 * 11 9 8 13 13 C 1.53046 * 109.27812 * 302.34806 * 12 11 9 14 14 H 1.09006 * 109.45023 * 299.16659 * 13 12 11 15 15 C 1.52991 * 109.46317 * 179.19221 * 13 12 11 16 16 N 1.46845 * 109.51969 * 59.17606 * 13 12 11 17 17 C 1.46906 * 110.99692 * 174.16665 * 16 13 12 18 18 C 1.50699 * 109.47177 * 64.61438 * 17 16 13 19 19 O 1.21288 * 120.00219 * 354.33290 * 18 17 16 20 20 N 1.34780 * 119.99835 * 174.33771 * 18 17 16 21 21 C 1.37090 * 120.00059 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00076 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00174 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99734 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00111 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46955 * 180.02562 * 25 23 21 27 27 H 1.48500 * 109.47224 * 300.00269 * 25 23 21 28 28 H 1.48504 * 109.46963 * 60.00753 * 25 23 21 29 29 C 1.46845 * 111.20064 * 298.25485 * 16 13 12 30 30 H 1.07997 * 119.99530 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.99925 * 180.02562 * 1 2 3 32 32 H 1.08007 * 120.00027 * 179.97438 * 2 1 3 33 33 H 1.08998 * 109.47264 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47146 * 299.99642 * 4 3 2 35 35 H 1.08997 * 109.47332 * 59.99534 * 4 3 2 36 36 H 1.08999 * 109.46498 * 299.99843 * 5 3 2 37 37 H 1.09004 * 109.46968 * 59.99537 * 5 3 2 38 38 H 1.08996 * 109.47110 * 180.02562 * 5 3 2 39 39 H 0.96991 * 120.00603 * 0.02562 * 8 6 3 40 40 H 1.08998 * 109.52496 * 177.81196 * 11 9 8 41 41 H 1.09003 * 109.57625 * 57.65110 * 11 9 8 42 42 H 1.08995 * 109.50934 * 182.40455 * 12 11 9 43 43 H 1.09003 * 109.53464 * 62.30108 * 12 11 9 44 44 H 1.08996 * 109.47567 * 293.10216 * 15 13 12 45 45 H 1.09004 * 109.47477 * 53.09877 * 15 13 12 46 46 H 1.08993 * 109.47367 * 173.09745 * 15 13 12 47 47 H 1.09001 * 109.46482 * 304.61796 * 17 16 13 48 48 H 1.08990 * 109.47384 * 184.62079 * 17 16 13 49 49 H 0.97006 * 119.99842 * 359.97438 * 20 18 17 50 50 H 0.97001 * 120.00422 * 359.97438 * 24 23 21 51 51 H 1.09005 * 109.46394 * 181.76060 * 29 16 13 52 52 H 1.09004 * 109.46500 * 301.73525 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 1.0694 2.4680 0.0006 5 6 2.9432 1.3862 -1.2492 6 6 2.9300 1.3849 1.2306 7 8 2.9353 0.4717 2.0286 8 7 3.6988 2.4710 1.4440 9 6 4.5414 2.5483 2.6400 10 1 4.9190 1.5554 2.8840 11 6 3.7160 3.0840 3.8131 12 6 3.2392 4.5019 3.4863 13 6 4.4524 5.3892 3.1983 14 1 5.0923 5.4264 4.0800 15 6 3.9797 6.8023 2.8515 16 7 5.2085 4.8349 2.0681 17 6 6.3016 5.7340 1.6744 18 6 7.3001 5.8330 2.7988 19 8 7.0698 5.2993 3.8633 20 7 8.4492 6.5148 2.6215 21 6 9.3578 6.6045 3.6441 22 1 9.1527 6.1292 4.5919 23 6 10.5426 7.3070 3.4611 24 7 10.7919 7.8858 2.3080 25 14 11.7804 7.4298 4.8547 26 1 12.9511 8.2270 4.4082 27 1 11.1468 8.0930 6.0226 28 1 12.2273 6.0674 5.2413 29 6 5.7169 3.4923 2.3767 30 1 -0.5399 0.9353 0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.6143 3.4120 0.0011 34 1 0.4424 2.4105 -0.8891 35 1 0.4430 2.4101 0.8908 36 1 3.6515 0.5577 -1.2491 37 1 2.3165 1.3285 -2.1392 38 1 3.4886 2.3299 -1.2489 39 1 3.6942 3.2015 0.8060 40 1 4.3318 3.1050 4.7123 41 1 2.8533 2.4384 3.9776 42 1 2.6869 4.9049 4.3351 43 1 2.5914 4.4756 2.6100 44 1 3.4419 6.7831 1.9036 45 1 3.3181 7.1672 3.6371 46 1 4.8421 7.4633 2.7666 47 1 5.8982 6.7233 1.4585 48 1 6.7935 5.3402 0.7852 49 1 8.6335 6.9415 1.7700 50 1 10.1490 7.8224 1.5844 51 1 6.2985 3.1213 1.5327 52 1 6.3509 3.5386 3.2622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132217631.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:22 Heat of formation + Delta-G solvation = -76.746924 kcal Electronic energy + Delta-G solvation = -31098.180128 eV Core-core repulsion = 27096.920014 eV Total energy + Delta-G solvation = -4001.260114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.76538 -40.88410 -39.19529 -37.27421 -36.47395 -35.67071 -33.84252 -33.11768 -32.66730 -31.16457 -29.03591 -28.26651 -27.61951 -26.24518 -25.02305 -24.16489 -22.80180 -22.10516 -21.33477 -20.34777 -19.86320 -19.61135 -18.13577 -17.92562 -17.21999 -17.00503 -16.60385 -16.40804 -16.05142 -15.96522 -15.62226 -15.55367 -15.42308 -15.10872 -14.70237 -14.58414 -14.29541 -13.84346 -13.44246 -13.32852 -13.29730 -13.27002 -13.06969 -13.01834 -12.88514 -12.87225 -12.65017 -12.61302 -12.32039 -12.08604 -11.96007 -11.93997 -11.76389 -11.66331 -11.62611 -11.35244 -11.17710 -11.00949 -10.76353 -10.25672 -10.08455 -10.01470 -9.07153 -8.92296 -6.06819 1.33564 1.49010 1.51715 1.69258 1.78800 1.98495 2.33213 2.40102 2.88371 3.08299 3.15896 3.63585 3.70332 3.78892 3.85385 3.98315 4.02830 4.05389 4.16448 4.22015 4.35982 4.42628 4.48037 4.52918 4.55640 4.64025 4.71901 4.74221 4.79973 4.84348 4.88423 4.90090 4.91879 4.95697 5.01278 5.08140 5.09927 5.16210 5.22737 5.27945 5.32679 5.44583 5.57289 5.61217 5.72675 5.85373 5.91890 5.96731 6.07226 6.56027 6.68101 6.75082 7.32957 7.44291 7.92594 8.54482 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.002529 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.963490 B =11067.903471 C =11203.950198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C -0.050 4.050 4 C -0.141 4.141 5 C -0.135 4.135 6 C 0.520 3.480 7 O -0.589 6.589 8 N -0.694 5.694 9 C 0.163 3.837 10 H 0.068 0.932 11 C -0.126 4.126 12 C -0.093 4.093 13 C 0.061 3.939 14 H 0.039 0.961 15 C -0.138 4.138 16 N -0.484 5.484 17 C 0.046 3.954 18 C 0.413 3.587 19 O -0.615 6.615 20 N -0.585 5.585 21 C -0.406 4.406 22 H 0.070 0.930 23 C -0.042 4.042 24 N -0.916 5.916 25 Si 1.129 2.871 26 H -0.273 1.273 27 H -0.274 1.274 28 H -0.275 1.275 29 C 0.039 3.961 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.417 0.583 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.036 0.964 47 H 0.118 0.882 48 H 0.111 0.889 49 H 0.384 0.616 50 H 0.261 0.739 51 H 0.078 0.922 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.118 -7.070 -9.873 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.163 4.163 3 C -0.053 4.053 4 C -0.198 4.198 5 C -0.192 4.192 6 C 0.307 3.693 7 O -0.469 6.469 8 N -0.346 5.346 9 C 0.057 3.943 10 H 0.086 0.914 11 C -0.164 4.164 12 C -0.131 4.131 13 C -0.047 4.047 14 H 0.057 0.943 15 C -0.195 4.195 16 N -0.207 5.207 17 C -0.086 4.086 18 C 0.201 3.799 19 O -0.502 6.502 20 N -0.223 5.223 21 C -0.536 4.536 22 H 0.088 0.912 23 C -0.241 4.241 24 N -0.555 5.555 25 Si 0.950 3.050 26 H -0.197 1.197 27 H -0.200 1.200 28 H -0.201 1.201 29 C -0.090 4.090 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.255 0.745 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.084 0.916 46 H 0.056 0.944 47 H 0.136 0.864 48 H 0.129 0.871 49 H 0.218 0.782 50 H 0.072 0.928 51 H 0.096 0.904 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -19.095 -7.458 -8.580 22.223 hybrid contribution -0.262 -0.301 0.053 0.403 sum -19.358 -7.759 -8.526 22.530 Atomic orbital electron populations 1.24148 0.95422 1.03263 0.99344 1.22537 0.96246 0.96531 1.01027 1.19909 0.95759 0.96445 0.93177 1.21967 0.98455 0.95917 1.03446 1.21830 0.99098 1.02821 0.95447 1.21069 0.79671 0.81199 0.87334 1.90661 1.67454 1.39769 1.49011 1.45862 1.43385 1.20726 1.24651 1.20704 0.90025 0.97793 0.85729 0.91375 1.21857 0.99676 0.97570 0.97335 1.21476 0.96447 0.93014 1.02112 1.21870 0.94700 0.95139 0.93030 0.94308 1.21818 1.00647 0.94038 1.03042 1.62531 1.20649 1.01101 1.36436 1.22252 0.90322 1.00594 0.95444 1.22198 0.84116 0.82227 0.91374 1.90436 1.78077 1.51363 1.30369 1.42198 1.17694 1.48068 1.14362 1.20447 1.01335 1.36157 0.95669 0.91203 1.27698 0.99443 0.93120 1.03798 1.70969 1.38022 1.42934 1.03615 0.82672 0.73605 0.77409 0.71345 1.19735 1.19982 1.20080 1.22434 0.95773 0.89169 1.01631 0.86457 0.87601 0.88542 0.90529 0.89165 0.92516 0.93106 0.89535 0.90573 0.74535 0.92909 0.92012 0.91116 0.89930 0.89855 0.91563 0.94446 0.86409 0.87102 0.78208 0.92848 0.90360 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.74 13.70 67.78 0.93 -1.81 16 2 C -0.14 -2.69 8.00 25.65 0.21 -2.48 16 3 C -0.05 -0.84 0.84 -53.67 -0.05 -0.88 16 4 C -0.14 -1.66 7.02 71.98 0.51 -1.16 16 5 C -0.13 -1.76 8.35 71.98 0.60 -1.16 16 6 C 0.52 12.58 6.44 87.66 0.56 13.15 16 7 O -0.59 -19.60 15.70 -3.01 -0.05 -19.65 16 8 N -0.69 -15.18 4.19 -442.28 -1.85 -17.04 16 9 C 0.16 4.48 2.81 45.04 0.13 4.61 16 10 H 0.07 2.14 7.58 -2.39 -0.02 2.12 16 11 C -0.13 -3.46 5.67 30.67 0.17 -3.28 16 12 C -0.09 -2.22 5.20 30.65 0.16 -2.06 16 13 C 0.06 1.73 2.05 44.94 0.09 1.82 16 14 H 0.04 1.51 5.69 -2.38 -0.01 1.50 16 15 C -0.14 -3.29 8.52 71.98 0.61 -2.68 16 16 N -0.48 -13.12 4.17 -875.63 -3.65 -16.77 16 17 C 0.05 1.36 5.45 85.56 0.47 1.83 16 18 C 0.41 17.93 7.18 87.66 0.63 18.56 16 19 O -0.62 -31.06 11.22 -3.05 -0.03 -31.09 16 20 N -0.58 -28.23 5.28 -306.98 -1.62 -29.86 16 21 C -0.41 -22.59 9.68 84.04 0.81 -21.77 16 22 H 0.07 4.21 7.16 -2.91 -0.02 4.19 16 23 C -0.04 -2.24 5.50 84.93 0.47 -1.77 16 24 N -0.92 -50.20 13.68 21.66 0.30 -49.91 16 25 Si 1.13 48.21 29.92 68.60 2.05 50.26 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 28 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 29 C 0.04 1.17 4.59 86.33 0.40 1.56 16 30 H 0.12 1.37 5.69 -2.91 -0.02 1.35 16 31 H 0.11 1.36 8.06 -2.91 -0.02 1.34 16 32 H 0.10 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.08 0.76 7.56 -2.39 -0.02 0.74 16 34 H 0.09 0.73 7.50 -2.39 -0.02 0.71 16 35 H 0.06 0.77 7.50 -2.39 -0.02 0.75 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.08 0.84 7.57 -2.39 -0.02 0.82 16 39 H 0.42 7.43 7.01 -92.72 -0.65 6.78 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.08 1.68 7.73 -2.39 -0.02 1.66 16 44 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.04 1.02 6.65 -2.39 -0.02 1.00 16 47 H 0.12 3.09 6.10 -2.39 -0.01 3.07 16 48 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 49 H 0.38 17.06 6.73 -92.70 -0.62 16.44 16 50 H 0.26 13.70 6.78 -92.71 -0.63 13.08 16 51 H 0.08 2.23 8.12 -2.38 -0.02 2.21 16 52 H 0.05 1.92 5.68 -2.39 -0.01 1.91 16 Total: -1.00 -70.89 398.76 1.63 -69.26 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.21 Total: 42.32 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: 6.70 Total: 2.48 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -6.83 Total: -113.57 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.08 Total: -50.74 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 2.05 Total: 50.26 kcal Total: -70.89 1.63 -69.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132217631.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.486 kcal (2) G-P(sol) polarization free energy of solvation -70.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds