Wall clock time and date at job start Tue Mar 31 2020 21:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46293 * 2 1 4 4 C 1.53039 * 109.46534 * 240.02088 * 2 1 3 5 5 C 1.53111 * 109.31500 * 180.78071 * 4 2 1 6 6 C 1.53199 * 109.11619 * 57.63626 * 5 4 2 7 7 H 1.09005 * 109.49875 * 182.42355 * 6 5 4 8 8 N 1.46504 * 109.52662 * 62.33641 * 6 5 4 9 9 C 1.34782 * 119.99913 * 85.15642 * 8 6 5 10 10 O 1.21283 * 120.00021 * 0.02562 * 9 8 6 11 11 C 1.50702 * 119.99923 * 180.02562 * 9 8 6 12 12 C 1.52998 * 112.84926 * 50.33681 * 11 9 8 13 13 C 1.53775 * 113.61498 * 279.13809 * 11 9 8 14 14 C 1.53960 * 87.01976 * 220.04823 * 13 11 9 15 15 C 1.53782 * 113.61199 * 181.52792 * 11 9 8 16 16 C 1.53039 * 109.29965 * 302.37216 * 6 5 4 17 17 N 1.46845 * 109.52506 * 59.17738 * 16 6 5 18 18 C 1.46895 * 111.00202 * 174.16127 * 17 16 6 19 19 C 1.50704 * 109.47051 * 288.16187 * 18 17 16 20 20 O 1.21290 * 119.99994 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99757 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99908 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99813 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99934 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00075 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99703 * 179.97438 * 24 22 21 27 27 H 1.48493 * 109.47544 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46795 * 120.00067 * 26 24 22 29 29 H 1.48497 * 109.47337 * 239.99830 * 26 24 22 30 30 H 1.09004 * 109.46786 * 187.38804 * 1 2 3 31 31 H 1.08998 * 109.47184 * 307.37978 * 1 2 3 32 32 H 1.08995 * 109.47054 * 67.38609 * 1 2 3 33 33 H 1.09004 * 109.50227 * 300.74687 * 4 2 1 34 34 H 1.09003 * 109.50009 * 60.82124 * 4 2 1 35 35 H 1.09006 * 109.52518 * 177.57867 * 5 4 2 36 36 H 1.08996 * 109.52644 * 297.77344 * 5 4 2 37 37 H 0.96999 * 120.00411 * 265.16015 * 8 6 5 38 38 H 1.08996 * 109.47587 * 69.66338 * 12 11 9 39 39 H 1.08997 * 109.47419 * 189.66571 * 12 11 9 40 40 H 1.09000 * 109.47108 * 309.66805 * 12 11 9 41 41 H 1.09006 * 113.61544 * 334.56777 * 13 11 9 42 42 H 1.09003 * 113.61257 * 105.46875 * 13 11 9 43 43 H 1.08994 * 113.53476 * 270.81291 * 14 13 11 44 44 H 1.09000 * 113.73920 * 139.94276 * 14 13 11 45 45 H 1.08991 * 113.61435 * 254.52818 * 15 11 9 46 46 H 1.09003 * 113.61230 * 25.43941 * 15 11 9 47 47 H 1.09001 * 109.46132 * 299.15792 * 16 6 5 48 48 H 1.09005 * 109.44926 * 179.18678 * 16 6 5 49 49 H 1.09004 * 109.47124 * 48.15827 * 18 17 16 50 50 H 1.09001 * 109.47452 * 168.16207 * 18 17 16 51 51 H 0.96996 * 120.00166 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00069 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 -1.2499 5 6 3.5709 -0.7361 -1.2366 6 6 4.0548 -1.4186 0.0468 7 1 5.1440 -1.3945 0.0832 8 7 3.5956 -2.8097 0.0646 9 6 4.3152 -3.7650 -0.5568 10 8 5.3432 -3.4731 -1.1304 11 6 3.8425 -5.1958 -0.5389 12 6 2.3792 -5.3434 -0.9606 13 6 4.1875 -5.9424 0.7605 14 6 4.5112 -7.1624 -0.1211 15 6 4.7922 -6.1673 -1.2595 16 6 3.4865 -0.6774 1.2591 17 7 2.0193 -0.6915 1.1995 18 6 1.4373 -0.1103 2.4165 19 6 1.6332 -1.0600 3.5701 20 8 2.2013 -2.1173 3.3954 21 7 1.1762 -0.7350 4.7956 22 6 1.3549 -1.5988 5.8452 23 1 1.8615 -2.5398 5.6898 24 6 0.8842 -1.2634 7.1088 25 7 0.2683 -0.1182 7.2979 26 14 1.1270 -2.4407 8.5387 27 1 1.8446 -3.6519 8.0663 28 1 1.9261 -1.7743 9.5982 29 1 -0.1959 -2.8314 9.0884 30 1 -0.3633 -1.0192 0.1322 31 1 -0.3633 0.6239 0.8166 32 1 -0.3633 0.3951 -0.9486 33 1 1.6659 -1.7448 -1.2574 34 1 1.6889 -0.1988 -2.1399 35 1 3.9374 -1.2862 -2.1033 36 1 3.9456 0.2870 -1.2683 37 1 2.7736 -3.0433 0.5236 38 1 2.2841 -5.1273 -2.0246 39 1 2.0460 -6.3627 -0.7657 40 1 1.7651 -4.6453 -0.3918 41 1 5.0556 -5.5364 1.2800 42 1 3.3314 -6.0926 1.4182 43 1 3.6513 -7.8060 -0.3062 44 1 5.3927 -7.7160 0.2024 45 1 4.4235 -6.4989 -2.2301 46 1 5.8259 -5.8230 -1.2932 47 1 3.8404 0.3535 1.2531 48 1 3.8176 -1.1698 2.1735 49 1 1.9295 0.8368 2.6381 50 1 0.3718 0.0609 2.2638 51 1 0.7216 0.1104 4.9352 52 1 -0.0599 0.1161 8.1801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132223825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:26 Heat of formation + Delta-G solvation = -77.514259 kcal Electronic energy + Delta-G solvation = -31258.282514 eV Core-core repulsion = 27256.989126 eV Total energy + Delta-G solvation = -4001.293389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.74934 -40.74100 -39.50462 -38.42332 -36.01135 -35.71762 -33.70912 -33.17960 -32.47503 -30.29107 -29.10087 -27.67846 -26.60051 -26.37653 -25.66809 -24.19458 -22.70544 -21.87602 -20.90996 -20.18574 -19.81497 -19.60902 -18.20419 -17.73590 -17.18028 -16.80155 -16.52737 -16.29545 -16.13015 -15.76308 -15.64974 -15.52919 -15.12786 -14.95191 -14.69427 -14.37953 -14.03911 -13.99588 -13.69724 -13.61918 -13.41881 -13.22310 -13.19357 -13.05842 -12.85406 -12.84072 -12.64745 -12.37898 -12.36125 -12.20427 -12.11444 -12.08740 -11.74708 -11.67807 -11.42472 -11.40271 -11.22394 -11.11779 -10.50837 -10.25129 -9.95499 -9.90227 -9.17281 -8.42955 -5.90147 1.37301 1.42594 1.55754 1.67922 2.13081 2.28305 2.32762 2.75181 3.24798 3.43227 3.49199 3.59400 3.70064 3.79137 3.87274 3.88171 4.00116 4.06910 4.09258 4.34323 4.40962 4.43060 4.46509 4.54430 4.57424 4.58666 4.66173 4.67475 4.75035 4.83434 4.86779 4.88608 4.92850 5.00647 5.02312 5.03523 5.07350 5.08219 5.17290 5.22846 5.30183 5.31488 5.43960 5.45359 5.51501 5.64161 5.92825 6.11082 6.27537 6.65688 6.70329 7.18673 7.32891 7.63781 8.19473 8.74867 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.003634 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2782.829845 B = 7703.821795 C = 9685.159633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.079 3.921 3 H 0.050 0.950 4 C -0.100 4.100 5 C -0.123 4.123 6 C 0.153 3.847 7 H 0.068 0.932 8 N -0.697 5.697 9 C 0.521 3.479 10 O -0.590 6.590 11 C -0.110 4.110 12 C -0.121 4.121 13 C -0.128 4.128 14 C -0.125 4.125 15 C -0.112 4.112 16 C 0.055 3.945 17 N -0.518 5.518 18 C 0.052 3.948 19 C 0.445 3.555 20 O -0.606 6.606 21 N -0.579 5.579 22 C -0.324 4.324 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.923 5.923 26 Si 0.987 3.013 27 H -0.274 1.274 28 H -0.275 1.275 29 H -0.272 1.272 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.412 0.588 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.116 0.884 51 H 0.394 0.606 52 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.724 -3.114 -18.042 18.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.137 4.137 5 C -0.161 4.161 6 C 0.047 3.953 7 H 0.086 0.914 8 N -0.347 5.347 9 C 0.309 3.691 10 O -0.471 6.471 11 C -0.113 4.113 12 C -0.178 4.178 13 C -0.166 4.166 14 C -0.162 4.162 15 C -0.150 4.150 16 C -0.073 4.073 17 N -0.244 5.244 18 C -0.079 4.079 19 C 0.232 3.768 20 O -0.491 6.491 21 N -0.217 5.217 22 C -0.454 4.454 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.565 5.565 26 Si 0.812 3.188 27 H -0.198 1.198 28 H -0.200 1.200 29 H -0.197 1.197 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.249 0.751 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.134 0.866 51 H 0.227 0.773 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.576 -3.989 -18.417 18.910 hybrid contribution 0.030 0.961 1.633 1.895 sum 1.606 -3.028 -16.784 17.130 Atomic orbital electron populations 1.21924 0.93279 1.02376 1.02786 1.21788 0.96232 0.95602 0.89198 0.93188 1.21546 0.94106 1.01267 0.96821 1.21914 0.97039 1.00822 0.96350 1.20915 0.97920 0.81406 0.95034 0.91351 1.46006 1.27452 1.07046 1.54215 1.20930 0.83035 0.88058 0.77107 1.90605 1.26284 1.83679 1.46559 1.22245 0.98986 0.89774 1.00334 1.21571 0.90641 1.03762 1.01842 1.22944 1.01559 0.97098 0.95024 1.22843 1.02816 0.95487 0.95045 1.22816 0.98710 0.94749 0.98720 1.22270 0.88088 0.98848 0.98109 1.61401 1.06294 1.55585 1.01103 1.21827 1.02660 0.94614 0.88764 1.20771 0.82849 0.88943 0.84223 1.90472 1.47040 1.27213 1.84370 1.41939 1.52425 1.20002 1.07295 1.19645 1.36203 1.01393 0.88124 0.90318 1.25943 0.96256 0.98469 1.00628 1.69673 1.39154 1.22816 1.24835 0.84944 0.78189 0.78003 0.77671 1.19834 1.20005 1.19730 0.92642 0.92312 0.89953 0.91965 0.89236 0.92282 0.89987 0.75066 0.91178 0.89584 0.92337 0.91880 0.90478 0.87837 0.90486 0.89647 0.91022 0.92898 0.92085 0.91937 0.86640 0.77276 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.57 71.98 0.62 -2.12 16 2 C 0.08 1.68 2.44 44.94 0.11 1.79 16 3 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.10 -1.95 5.20 30.64 0.16 -1.79 16 5 C -0.12 -2.76 5.68 30.70 0.17 -2.58 16 6 C 0.15 4.32 2.81 45.07 0.13 4.44 16 7 H 0.07 2.15 7.58 -2.38 -0.02 2.13 16 8 N -0.70 -20.60 4.30 -442.13 -1.90 -22.50 16 9 C 0.52 15.90 6.88 87.66 0.60 16.50 16 10 O -0.59 -21.51 15.57 -3.04 -0.05 -21.56 16 11 C -0.11 -2.65 1.25 -52.40 -0.07 -2.72 16 12 C -0.12 -2.32 8.98 71.98 0.65 -1.67 16 13 C -0.13 -3.11 7.21 31.18 0.22 -2.88 16 14 C -0.12 -2.28 7.74 31.18 0.24 -2.04 16 15 C -0.11 -2.42 6.99 31.12 0.22 -2.20 16 16 C 0.06 1.67 4.70 86.33 0.41 2.07 16 17 N -0.52 -14.77 3.60 -875.64 -3.15 -17.92 16 18 C 0.05 1.67 5.26 85.56 0.45 2.12 16 19 C 0.45 19.88 7.47 87.66 0.65 20.53 16 20 O -0.61 -30.89 14.42 -3.06 -0.04 -30.93 16 21 N -0.58 -28.60 5.29 -306.98 -1.62 -30.22 16 22 C -0.32 -17.92 9.68 84.04 0.81 -17.10 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 25 N -0.92 -49.30 13.05 21.66 0.28 -49.01 16 26 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 29 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.10 6.43 -2.39 -0.02 1.09 16 32 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 33 H 0.06 1.36 7.73 -2.38 -0.02 1.34 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.41 12.82 7.16 -92.71 -0.66 12.16 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.33 7.34 -2.39 -0.02 1.31 16 40 H 0.06 1.22 7.11 -2.39 -0.02 1.20 16 41 H 0.06 1.77 8.09 -2.38 -0.02 1.75 16 42 H 0.08 1.87 8.10 -2.39 -0.02 1.85 16 43 H 0.10 1.47 7.64 -2.39 -0.02 1.46 16 44 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 46 H 0.07 1.85 7.45 -2.39 -0.02 1.83 16 47 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.06 2.35 6.35 -2.38 -0.02 2.34 16 49 H 0.06 1.84 8.05 -2.39 -0.02 1.82 16 50 H 0.12 3.26 5.55 -2.39 -0.01 3.24 16 51 H 0.39 18.68 7.90 -92.71 -0.73 17.95 16 52 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -66.70 402.78 0.92 -65.78 By element: Atomic # 1 Polarization: 50.10 SS G_CDS: -0.47 Total: 49.63 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 5.85 Total: 12.10 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -6.39 Total: -119.66 kcal Atomic # 8 Polarization: -52.40 SS G_CDS: -0.09 Total: -52.49 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -66.70 0.92 -65.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132223825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.736 kcal (2) G-P(sol) polarization free energy of solvation -66.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds