Wall clock time and date at job start Tue Mar 31 2020 21:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 109.44997 * 2 1 4 4 C 1.53035 * 109.46142 * 119.97254 * 2 1 3 5 5 C 1.53121 * 109.27616 * 179.19460 * 4 2 1 6 6 C 1.53119 * 109.16036 * 302.34891 * 5 4 2 7 7 H 1.09001 * 109.53474 * 177.61517 * 6 5 4 8 8 N 1.46498 * 109.50241 * 297.70771 * 6 5 4 9 9 C 1.34777 * 120.00546 * 274.80674 * 8 6 5 10 10 O 1.21283 * 119.99530 * 0.02562 * 9 8 6 11 11 C 1.50699 * 120.00306 * 180.02562 * 9 8 6 12 12 C 1.52994 * 112.85110 * 48.79952 * 11 9 8 13 13 C 1.53782 * 113.61498 * 180.02562 * 11 9 8 14 14 C 1.53781 * 87.08260 * 89.19810 * 13 11 9 15 15 C 1.53786 * 87.17350 * 25.39213 * 14 13 11 16 16 C 1.53033 * 109.28122 * 57.65153 * 6 5 4 17 17 N 1.46836 * 109.52405 * 300.82255 * 16 6 5 18 18 C 1.46900 * 111.00279 * 185.84016 * 17 16 6 19 19 C 1.50705 * 109.46804 * 293.95159 * 18 17 16 20 20 O 1.21288 * 119.99935 * 0.02562 * 19 18 17 21 21 N 1.34776 * 119.99888 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99879 * 180.02562 * 21 19 18 23 23 H 1.07990 * 119.99876 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99877 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99700 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 119.99888 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47315 * 359.97438 * 26 24 22 28 28 H 1.48509 * 109.47270 * 119.99793 * 26 24 22 29 29 H 1.48497 * 109.47117 * 239.99524 * 26 24 22 30 30 H 1.09008 * 109.46928 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46947 * 299.96883 * 1 2 3 32 32 H 1.08998 * 109.47133 * 59.97533 * 1 2 3 33 33 H 1.08994 * 109.50698 * 299.13652 * 4 2 1 34 34 H 1.08995 * 109.50323 * 59.25487 * 4 2 1 35 35 H 1.08999 * 109.52247 * 182.44154 * 5 4 2 36 36 H 1.08997 * 109.52175 * 62.25126 * 5 4 2 37 37 H 0.97001 * 119.99856 * 94.80338 * 8 6 5 38 38 H 1.08996 * 109.47659 * 191.19490 * 12 11 9 39 39 H 1.09003 * 109.47607 * 311.20386 * 12 11 9 40 40 H 1.09003 * 109.47085 * 71.19884 * 12 11 9 41 41 H 1.09001 * 113.61250 * 334.64628 * 13 11 9 42 42 H 1.08997 * 113.61225 * 203.74469 * 13 11 9 43 43 H 1.09002 * 113.61445 * 139.98212 * 14 13 11 44 44 H 1.09002 * 113.61408 * 270.79943 * 14 13 11 45 45 H 1.08993 * 113.61491 * 89.15923 * 15 14 13 46 46 H 1.09000 * 113.61138 * 220.06261 * 15 14 13 47 47 H 1.08998 * 109.45962 * 60.84080 * 16 6 5 48 48 H 1.09002 * 109.46252 * 180.80505 * 16 6 5 49 49 H 1.09004 * 109.47024 * 53.95048 * 18 17 16 50 50 H 1.08999 * 109.47744 * 173.95443 * 18 17 16 51 51 H 0.97003 * 120.00373 * 0.02562 * 21 19 18 52 52 H 0.96998 * 119.99431 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5710 -0.7360 1.2355 6 6 4.0548 -1.4187 -0.0468 7 1 5.1439 -1.3952 -0.0836 8 7 3.5948 -2.8095 -0.0639 9 6 4.3141 -3.7650 0.5576 10 8 5.3421 -3.4732 1.1314 11 6 3.8413 -5.1957 0.5395 12 6 3.4609 -5.6781 -0.8617 13 6 4.7713 -6.1615 1.2926 14 6 3.9451 -5.8506 2.5518 15 6 2.7791 -5.5077 1.6095 16 6 3.4864 -0.6777 -1.2591 17 7 2.0194 -0.6917 -1.1994 18 6 1.4373 -0.1106 -2.4165 19 6 1.7792 1.3555 -2.4863 20 8 2.4428 1.8658 -1.6087 21 7 1.3483 2.0993 -3.5244 22 6 1.6598 3.4329 -3.5881 23 1 2.2500 3.8875 -2.8063 24 6 1.2152 4.1999 -4.6581 25 7 0.4965 3.6467 -5.6092 26 14 1.6389 6.0170 -4.7445 27 1 2.4514 6.3928 -3.5597 28 1 2.4140 6.2863 -5.9824 29 1 0.3879 6.8168 -4.7601 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8902 32 1 -0.3633 0.5142 -0.8897 33 1 1.6896 -0.1982 2.1399 34 1 1.6660 -1.7446 1.2576 35 1 3.9380 -1.2863 2.1019 36 1 3.9457 0.2870 1.2672 37 1 2.7725 -3.0428 -0.5224 38 1 2.9455 -6.6357 -0.7890 39 1 2.8037 -4.9465 -1.3320 40 1 4.3626 -5.7956 -1.4628 41 1 5.8036 -5.8166 1.3515 42 1 4.6879 -7.1962 0.9602 43 1 3.7584 -6.7230 3.1780 44 1 4.3157 -4.9954 3.1170 45 1 2.1501 -6.3634 1.3639 46 1 2.2055 -4.6358 1.9239 47 1 3.8403 0.3533 -1.2532 48 1 3.8175 -1.1699 -2.1736 49 1 1.8413 -0.6200 -3.2915 50 1 0.3541 -0.2304 -2.3943 51 1 0.8178 1.6911 -4.2265 52 1 0.1864 4.1820 -6.3562 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132223827.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:35 Heat of formation + Delta-G solvation = -56.379347 kcal Electronic energy + Delta-G solvation = -31145.738672 eV Core-core repulsion = 27145.361762 eV Total energy + Delta-G solvation = -4000.376910 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.87699 -39.74888 -37.96694 -36.96158 -34.70419 -33.88553 -32.52882 -31.46530 -31.32311 -29.82395 -27.62985 -26.45004 -25.83310 -24.62149 -24.14187 -22.77994 -21.94906 -20.99786 -19.49919 -19.23939 -18.91762 -17.83800 -16.72739 -16.17760 -15.84581 -15.56107 -15.43132 -15.12899 -14.75610 -14.44809 -14.37604 -14.24895 -13.88879 -13.67238 -13.47370 -13.41145 -13.02481 -12.79489 -12.74193 -12.51468 -12.37236 -11.93246 -11.77917 -11.69298 -11.60903 -11.51625 -11.34376 -11.23612 -11.11009 -11.00689 -10.52477 -10.49777 -10.43217 -10.41099 -10.33267 -10.29616 -9.90925 -9.63915 -9.50476 -9.28776 -8.87646 -8.05203 -7.45140 -6.50607 -3.91901 2.66273 3.09122 3.21257 3.23543 3.27855 3.77212 4.10333 4.22939 4.25082 4.37251 4.58117 4.63565 4.84734 4.91555 5.03976 5.05775 5.14989 5.22768 5.23455 5.33552 5.41668 5.46402 5.47411 5.54825 5.62141 5.70367 5.75831 5.77617 5.82386 5.82832 5.90012 5.90620 6.01832 6.03216 6.05480 6.07633 6.16708 6.18165 6.21729 6.25941 6.33460 6.41958 6.46165 6.68501 6.85672 7.30865 7.44357 7.46738 7.69636 7.96264 8.34173 8.50349 9.08169 9.43979 9.94156 10.65912 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024037 B = 0.002508 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.600974 B =11162.040697 C =11260.650564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 H 0.095 0.905 4 C -0.103 4.103 5 C -0.129 4.129 6 C 0.154 3.846 7 H 0.086 0.914 8 N -0.705 5.705 9 C 0.534 3.466 10 O -0.546 6.546 11 C -0.112 4.112 12 C -0.135 4.135 13 C -0.118 4.118 14 C -0.141 4.141 15 C -0.121 4.121 16 C 0.035 3.965 17 N -0.509 5.509 18 C 0.038 3.962 19 C 0.407 3.593 20 O -0.593 6.593 21 N -0.556 5.556 22 C -0.301 4.301 23 H 0.103 0.897 24 C 0.024 3.976 25 N -0.898 5.898 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.407 0.593 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.093 0.907 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.998 -18.472 9.799 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.052 4.052 3 H 0.112 0.888 4 C -0.141 4.141 5 C -0.168 4.168 6 C 0.049 3.951 7 H 0.104 0.896 8 N -0.357 5.357 9 C 0.320 3.680 10 O -0.424 6.424 11 C -0.115 4.115 12 C -0.192 4.192 13 C -0.155 4.155 14 C -0.179 4.179 15 C -0.159 4.159 16 C -0.093 4.093 17 N -0.233 5.233 18 C -0.094 4.094 19 C 0.193 3.807 20 O -0.480 6.480 21 N -0.191 5.191 22 C -0.431 4.431 23 H 0.121 0.879 24 C -0.178 4.178 25 N -0.539 5.539 26 Si 0.755 3.245 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.207 1.207 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.243 0.757 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.089 0.911 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.104 0.896 50 H 0.111 0.889 51 H 0.226 0.774 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.934 -18.300 10.631 21.253 hybrid contribution -0.418 1.481 -1.015 1.843 sum 1.516 -16.820 9.617 19.434 Atomic orbital electron populations 1.21846 0.95297 1.01202 1.01667 1.22025 0.94586 0.99717 0.88850 0.88765 1.21539 0.94932 1.00465 0.97183 1.21917 0.96486 1.00904 0.97448 1.21005 0.98852 0.80083 0.95143 0.89622 1.45993 1.27295 1.07353 1.55016 1.19912 0.83624 0.86367 0.78103 1.90665 1.24671 1.82894 1.44187 1.21994 0.99511 0.93134 0.96856 1.21724 1.01793 1.01486 0.94206 1.22823 0.99449 0.97991 0.95277 1.22832 0.96580 1.01841 0.96599 1.22976 0.95826 1.01925 0.95159 1.22498 0.88686 1.01497 0.96640 1.62402 1.06613 1.52591 1.01717 1.22096 1.01273 0.92344 0.93667 1.21055 0.85882 0.89172 0.84589 1.90387 1.44137 1.73709 1.39793 1.42069 1.46551 1.09584 1.20903 1.19750 1.31464 0.84249 1.07653 0.87922 1.25288 0.96508 1.00642 0.95386 1.69616 1.35865 1.37241 1.11131 0.85818 0.78279 0.81971 0.78398 1.19239 1.20672 1.20682 0.92809 0.92848 0.92492 0.92177 0.92147 0.91991 0.90986 0.75652 0.91604 0.91882 0.92022 0.90174 0.89702 0.91417 0.89844 0.89201 0.91118 0.89896 0.91136 0.89585 0.88882 0.77418 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.76 37.16 0.33 -1.67 16 2 C 0.06 0.85 1.95 -67.72 -0.13 0.72 16 3 H 0.09 1.83 5.36 -51.93 -0.28 1.55 16 4 C -0.10 -1.36 5.21 -26.65 -0.14 -1.50 16 5 C -0.13 -1.78 5.67 -26.61 -0.15 -1.93 16 6 C 0.15 2.11 2.81 -67.85 -0.19 1.92 16 7 H 0.09 1.28 7.58 -51.93 -0.39 0.88 16 8 N -0.71 -8.39 4.29 -53.73 -0.23 -8.62 16 9 C 0.53 6.75 6.63 -10.99 -0.07 6.68 16 10 O -0.55 -8.83 15.42 5.55 0.09 -8.75 16 11 C -0.11 -1.06 1.26 -154.76 -0.20 -1.25 16 12 C -0.13 -1.04 9.12 37.15 0.34 -0.70 16 13 C -0.12 -1.08 7.02 -25.92 -0.18 -1.26 16 14 C -0.14 -1.25 7.73 -25.92 -0.20 -1.45 16 15 C -0.12 -0.99 7.23 -25.82 -0.19 -1.18 16 16 C 0.04 0.53 4.69 -3.84 -0.02 0.51 16 17 N -0.51 -7.44 4.17 -228.13 -0.95 -8.39 16 18 C 0.04 0.61 5.30 -4.97 -0.03 0.58 16 19 C 0.41 8.75 7.04 -10.98 -0.08 8.67 16 20 O -0.59 -14.32 11.20 5.55 0.06 -14.26 16 21 N -0.56 -13.32 5.29 -10.96 -0.06 -13.38 16 22 C -0.30 -8.07 9.68 -14.93 -0.14 -8.22 16 23 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 24 C 0.02 0.62 5.50 -17.46 -0.10 0.53 16 25 N -0.90 -23.76 13.05 55.50 0.72 -23.04 16 26 Si 0.93 20.59 29.55 -169.99 -5.02 15.57 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.88 6.24 -51.93 -0.32 0.56 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.75 7.73 -51.93 -0.40 0.35 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.41 4.42 7.06 -40.82 -0.29 4.13 16 38 H 0.06 0.41 7.95 -51.93 -0.41 0.00 16 39 H 0.06 0.48 7.00 -51.93 -0.36 0.11 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.89 7.43 -51.93 -0.39 0.50 16 42 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 45 H 0.09 0.58 7.97 -51.93 -0.41 0.17 16 46 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 47 H 0.08 1.54 6.00 -51.93 -0.31 1.22 16 48 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 49 H 0.09 1.27 8.06 -51.93 -0.42 0.85 16 50 H 0.09 1.39 6.32 -51.93 -0.33 1.06 16 51 H 0.39 9.08 7.90 -40.82 -0.32 8.76 16 52 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 397.28 15.07 5.99 5.99 Total: -1.00 -29.44 397.28 -9.34 -38.78 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: -8.79 Total: 15.63 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.15 Total: 0.45 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.51 Total: -53.42 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.15 Total: -23.00 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.44 -9.34 -38.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132223827.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.598 kcal (2) G-P(sol) polarization free energy of solvation -29.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds