Wall clock time and date at job start Tue Mar 31 2020 21:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00074 * 2 1 4 4 C 1.53004 * 109.47317 * 125.00247 * 3 2 1 5 5 C 1.52994 * 109.47230 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46908 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00291 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99956 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00131 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.50158 * 324.92893 * 9 8 6 11 11 C 1.53121 * 109.50176 * 85.00418 * 9 8 6 12 12 C 1.53113 * 109.15972 * 177.59429 * 11 9 8 13 13 C 1.53035 * 109.28360 * 302.34652 * 12 11 9 14 14 H 1.08999 * 109.45987 * 299.16625 * 13 12 11 15 15 C 1.52999 * 109.45681 * 179.18789 * 13 12 11 16 16 N 1.46851 * 109.52003 * 59.17939 * 13 12 11 17 17 C 1.46906 * 110.99872 * 174.16455 * 16 13 12 18 18 C 1.50699 * 109.47119 * 64.62072 * 17 16 13 19 19 O 1.21297 * 120.00132 * 354.32928 * 18 17 16 20 20 N 1.34773 * 119.99829 * 174.06027 * 18 17 16 21 21 C 1.37097 * 120.00030 * 180.27132 * 20 18 17 22 22 H 1.07995 * 120.00253 * 359.97438 * 21 20 18 23 23 C 1.38951 * 119.99988 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00367 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99959 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47125 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47437 * 119.99560 * 25 23 21 28 28 H 1.48493 * 109.47160 * 239.99562 * 25 23 21 29 29 C 1.46849 * 111.19647 * 298.25697 * 16 13 12 30 30 H 1.08001 * 119.99758 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.00161 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99758 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47618 * 4.99712 * 3 2 1 34 34 H 1.09010 * 109.46721 * 244.99733 * 3 2 1 35 35 H 1.09006 * 109.46748 * 59.99513 * 4 3 2 36 36 H 1.08999 * 109.46737 * 299.99868 * 4 3 2 37 37 H 1.09008 * 109.46633 * 60.00273 * 5 4 3 38 38 H 1.08999 * 109.47668 * 299.99929 * 5 4 3 39 39 H 0.97003 * 120.00009 * 0.02562 * 8 6 5 40 40 H 1.09004 * 109.52036 * 57.69595 * 11 9 8 41 41 H 1.08996 * 109.57798 * 297.53134 * 11 9 8 42 42 H 1.09002 * 109.50409 * 182.40593 * 12 11 9 43 43 H 1.09007 * 109.53617 * 62.30974 * 12 11 9 44 44 H 1.08992 * 109.47379 * 293.10949 * 15 13 12 45 45 H 1.09003 * 109.46671 * 53.10867 * 15 13 12 46 46 H 1.09001 * 109.47242 * 173.10448 * 15 13 12 47 47 H 1.08993 * 109.46913 * 304.61857 * 17 16 13 48 48 H 1.09000 * 109.46995 * 184.61821 * 17 16 13 49 49 H 0.97006 * 120.00307 * 0.27463 * 20 18 17 50 50 H 0.96993 * 120.00846 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.45720 * 181.75718 * 29 16 13 52 52 H 1.08994 * 109.46597 * 301.72570 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.8006 2.6578 1.1812 6 6 4.7571 2.6855 2.3454 7 8 4.8207 1.7388 3.1008 8 7 5.5426 3.7620 2.5466 9 6 6.4729 3.7888 3.6780 10 1 6.0276 3.2710 4.5276 11 6 7.7787 3.0936 3.2828 12 6 8.7665 3.1788 4.4495 13 6 8.9965 4.6480 4.8107 14 1 9.4182 5.1712 3.9525 15 6 9.9677 4.7370 5.9896 16 7 7.7181 5.2679 5.1820 17 6 7.9197 6.6397 5.6675 18 6 8.4557 7.4950 4.5485 19 8 8.7477 6.9895 3.4852 20 7 8.6055 8.8224 4.7273 21 6 9.0878 9.6013 3.7074 22 1 9.3482 9.1512 2.7609 23 6 9.2427 10.9698 3.8919 24 7 8.9264 11.5175 5.0437 25 14 9.8993 12.0312 2.5020 26 1 10.1778 11.1795 1.3178 27 1 8.8898 13.0603 2.1457 28 1 11.1528 12.6975 2.9377 29 6 6.7694 5.2404 4.0615 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9352 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3587 2.1316 0.0895 34 1 2.6214 1.4025 -0.9315 35 1 3.7400 0.5064 1.0920 36 1 2.4773 1.2356 2.1130 37 1 3.0958 3.4846 1.2706 38 1 4.3584 2.7549 0.2498 39 1 5.4921 4.5191 1.9423 40 1 8.2039 3.5870 2.4088 41 1 7.5795 2.0476 3.0498 42 1 9.7131 2.7230 4.1590 43 1 8.3584 2.6516 5.3119 44 1 9.4967 4.3217 6.8805 45 1 10.8711 4.1722 5.7594 46 1 10.2272 5.7804 6.1687 47 1 8.6322 6.6322 6.4923 48 1 6.9690 7.0465 6.0123 49 1 8.3720 9.2267 5.5776 50 1 9.0342 12.4728 5.1725 51 1 5.8438 5.7342 4.3573 52 1 7.2014 5.7609 3.2069 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132255660.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:40 Heat of formation + Delta-G solvation = -89.975618 kcal Electronic energy + Delta-G solvation = -29614.153379 eV Core-core repulsion = 25612.319626 eV Total energy + Delta-G solvation = -4001.833754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -41.48007 -40.60090 -38.94671 -36.92914 -36.18294 -35.70249 -33.89578 -33.37188 -33.24664 -32.11743 -29.09068 -28.49669 -27.09681 -26.26457 -24.13056 -23.40675 -22.25299 -21.32708 -21.24007 -20.73560 -20.51923 -19.69650 -18.14372 -17.65127 -17.40858 -16.92021 -16.56577 -16.49164 -16.14006 -15.97643 -15.77397 -15.59048 -15.15789 -15.02004 -14.83761 -14.53330 -14.32846 -14.18015 -13.85003 -13.53331 -13.40215 -13.25013 -13.01831 -12.90915 -12.78000 -12.61934 -12.55530 -12.45493 -12.41970 -12.14294 -11.94686 -11.82114 -11.76514 -11.75349 -11.61461 -11.36109 -11.27227 -10.94218 -10.79893 -10.17702 -10.05171 -9.98404 -8.99866 -8.46106 -5.95779 1.34086 1.40517 1.42901 1.53477 1.67999 2.01743 2.14112 2.28056 3.05353 3.20145 3.25803 3.70065 3.82972 3.86977 3.92186 3.99730 4.08338 4.09510 4.33434 4.39324 4.40338 4.43685 4.46735 4.52275 4.60784 4.64020 4.67445 4.70054 4.75281 4.78322 4.84793 4.94172 4.94922 5.02788 5.04230 5.08675 5.17962 5.20444 5.24368 5.25372 5.39201 5.40075 5.48379 5.54775 5.79596 5.91711 5.92211 6.06650 6.14762 6.57217 6.59483 7.11754 7.28178 7.55628 8.09672 8.69291 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.002256 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.164813 B =12410.820632 C =13980.661258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.165 4.165 3 C -0.091 4.091 4 C -0.094 4.094 5 C -0.134 4.134 6 C 0.510 3.490 7 O -0.584 6.584 8 N -0.720 5.720 9 C 0.161 3.839 10 H 0.077 0.923 11 C -0.121 4.121 12 C -0.098 4.098 13 C 0.060 3.940 14 H 0.047 0.953 15 C -0.140 4.140 16 N -0.497 5.497 17 C 0.046 3.954 18 C 0.412 3.588 19 O -0.617 6.617 20 N -0.570 5.570 21 C -0.329 4.329 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.989 3.011 26 H -0.273 1.273 27 H -0.272 1.272 28 H -0.273 1.273 29 C 0.041 3.959 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.411 0.589 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.040 0.960 47 H 0.113 0.887 48 H 0.106 0.894 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.073 0.927 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.418 -16.393 -5.043 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.183 4.183 3 C -0.128 4.128 4 C -0.132 4.132 5 C -0.174 4.174 6 C 0.298 3.702 7 O -0.464 6.464 8 N -0.371 5.371 9 C 0.056 3.944 10 H 0.095 0.905 11 C -0.159 4.159 12 C -0.137 4.137 13 C -0.048 4.048 14 H 0.065 0.935 15 C -0.197 4.197 16 N -0.220 5.220 17 C -0.086 4.086 18 C 0.199 3.801 19 O -0.505 6.505 20 N -0.206 5.206 21 C -0.459 4.459 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.559 5.559 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.199 1.199 29 C -0.088 4.088 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.246 0.754 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.059 0.941 47 H 0.131 0.869 48 H 0.124 0.876 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.091 0.909 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.378 -17.475 -4.745 20.871 hybrid contribution 0.685 1.862 -0.930 2.191 sum -9.693 -15.613 -5.675 19.233 Atomic orbital electron populations 1.24016 0.95977 1.02495 1.01133 1.23089 0.96395 0.98924 0.99941 1.20773 0.98014 0.95588 0.98393 1.21196 0.97518 0.96003 0.98497 1.21755 0.97931 1.01160 0.96546 1.21383 0.80650 0.81339 0.86793 1.90675 1.69940 1.36715 1.49109 1.46064 1.40165 1.20386 1.30467 1.20670 0.89365 0.95361 0.89022 0.90483 1.21845 0.95294 1.00140 0.98656 1.21510 0.99255 0.94915 0.97990 1.21893 0.89532 0.95052 0.98287 0.93472 1.21833 0.98624 1.01176 0.98112 1.62454 1.11122 1.14879 1.33545 1.22195 1.03173 0.87430 0.95759 1.22022 0.83809 0.83165 0.91099 1.90405 1.57188 1.72823 1.30122 1.42137 1.56850 1.06601 1.15050 1.19667 1.41096 0.89930 0.95233 0.90279 1.26007 0.97388 0.97940 0.99917 1.69670 1.48399 1.13310 1.24567 0.84918 0.78107 0.77817 0.77793 1.19793 1.19700 1.19874 1.22341 0.96229 0.95540 0.94643 0.88011 0.87961 0.87479 0.90522 0.89763 0.92507 0.92881 0.86655 0.86573 0.75359 0.92861 0.91995 0.90300 0.90817 0.90732 0.91171 0.94089 0.86883 0.87584 0.77130 0.91361 0.90904 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 14.32 67.78 0.97 -1.53 16 2 C -0.17 -2.26 9.52 25.65 0.24 -2.02 16 3 C -0.09 -1.11 5.66 29.85 0.17 -0.94 16 4 C -0.09 -1.55 4.49 30.59 0.14 -1.41 16 5 C -0.13 -1.98 5.70 29.85 0.17 -1.81 16 6 C 0.51 12.05 7.80 87.66 0.68 12.73 16 7 O -0.58 -18.65 15.65 -3.03 -0.05 -18.69 16 8 N -0.72 -16.66 5.08 -442.29 -2.25 -18.91 16 9 C 0.16 4.48 2.62 45.04 0.12 4.60 16 10 H 0.08 2.39 7.58 -2.39 -0.02 2.37 16 11 C -0.12 -3.34 5.58 30.67 0.17 -3.17 16 12 C -0.10 -2.61 5.37 30.64 0.16 -2.45 16 13 C 0.06 1.88 2.05 44.94 0.09 1.98 16 14 H 0.05 1.87 5.69 -2.39 -0.01 1.85 16 15 C -0.14 -3.79 8.52 71.98 0.61 -3.18 16 16 N -0.50 -15.58 4.69 -875.64 -4.11 -19.69 16 17 C 0.05 1.53 5.45 85.56 0.47 2.00 16 18 C 0.41 18.14 7.18 87.66 0.63 18.77 16 19 O -0.62 -30.58 11.22 -3.08 -0.03 -30.61 16 20 N -0.57 -27.87 5.29 -306.99 -1.62 -29.50 16 21 C -0.33 -17.96 9.68 84.04 0.81 -17.15 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 24 N -0.92 -48.46 13.05 21.66 0.28 -48.18 16 25 Si 0.99 41.86 29.55 68.60 2.03 43.89 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 C 0.04 1.28 4.47 86.33 0.39 1.67 16 30 H 0.10 1.12 7.84 -2.91 -0.02 1.10 16 31 H 0.10 1.10 8.06 -2.91 -0.02 1.08 16 32 H 0.11 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.08 0.81 7.79 -2.39 -0.02 0.79 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.06 1.09 8.10 -2.38 -0.02 1.07 16 36 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.41 7.89 8.60 -92.71 -0.80 7.10 16 40 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.04 1.22 6.65 -2.39 -0.02 1.20 16 47 H 0.11 3.41 6.10 -2.39 -0.01 3.40 16 48 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 49 H 0.40 18.63 7.90 -92.70 -0.73 17.89 16 50 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 51 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 52 H 0.05 1.96 5.68 -2.39 -0.01 1.95 16 Total: -1.00 -66.72 410.89 -0.07 -66.80 By element: Atomic # 1 Polarization: 47.60 SS G_CDS: -0.62 Total: 46.98 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 6.30 Total: 7.90 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -7.70 Total: -116.27 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -0.08 Total: -49.31 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -66.72 -0.07 -66.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132255660.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.180 kcal (2) G-P(sol) polarization free energy of solvation -66.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds