Wall clock time and date at job start Tue Mar 31 2020 21:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 119.99951 * 2 1 4 4 N 1.34776 * 120.00341 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00109 * 185.09089 * 4 2 1 6 6 C 1.50700 * 110.01811 * 302.42653 * 5 4 2 7 7 O 1.21280 * 119.99671 * 142.42469 * 6 5 4 8 8 N 1.34767 * 120.00042 * 322.42442 * 6 5 4 9 9 C 1.46500 * 120.00053 * 184.99123 * 8 6 5 10 10 H 1.08997 * 109.52176 * 324.91671 * 9 8 6 11 11 C 1.53045 * 109.49822 * 204.83495 * 9 8 6 12 12 C 1.53038 * 109.53792 * 178.68044 * 11 9 8 13 13 C 1.53194 * 109.31478 * 61.36609 * 12 11 9 14 14 H 1.09000 * 109.70225 * 65.22115 * 13 12 11 15 15 C 1.52994 * 109.58854 * 185.57563 * 13 12 11 16 16 N 1.46929 * 108.77473 * 305.36541 * 13 12 11 17 17 C 1.36931 * 120.62897 * 233.62737 * 16 13 12 18 18 H 1.07999 * 120.00289 * 32.52301 * 17 16 13 19 19 C 1.38816 * 119.99761 * 212.51876 * 17 16 13 20 20 N 1.31622 * 120.00214 * 10.56042 * 19 17 16 21 21 Si 1.86804 * 119.99774 * 190.56191 * 19 17 16 22 22 H 1.48501 * 109.46961 * 90.00162 * 21 19 17 23 23 H 1.48502 * 109.46781 * 209.99941 * 21 19 17 24 24 H 1.48498 * 109.47424 * 330.00021 * 21 19 17 25 25 C 1.46928 * 118.73568 * 53.60763 * 16 13 12 26 26 C 1.54267 * 110.07460 * 63.84652 * 5 4 2 27 27 C 1.54892 * 104.19610 * 95.69385 * 26 5 4 28 28 C 1.54884 * 102.74666 * 37.94391 * 27 26 5 29 29 C 1.53876 * 110.03077 * 181.03425 * 5 4 2 30 30 H 1.08998 * 109.47228 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47493 * 299.99842 * 1 2 3 32 32 H 1.09000 * 109.47489 * 59.99927 * 1 2 3 33 33 H 0.97001 * 119.99397 * 5.09183 * 4 2 1 34 34 H 0.97002 * 120.00580 * 4.98602 * 8 6 5 35 35 H 1.08995 * 109.46289 * 298.70350 * 11 9 8 36 36 H 1.09003 * 109.45508 * 58.66169 * 11 9 8 37 37 H 1.09002 * 109.49903 * 301.41314 * 12 11 9 38 38 H 1.08997 * 109.52178 * 181.33372 * 12 11 9 39 39 H 1.09004 * 109.47078 * 179.28762 * 15 13 12 40 40 H 1.08996 * 109.47469 * 299.29295 * 15 13 12 41 41 H 1.08999 * 109.47071 * 59.29512 * 15 13 12 42 42 H 0.97002 * 119.99718 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.58335 * 186.60685 * 25 16 13 44 44 H 1.08998 * 109.70534 * 66.24954 * 25 16 13 45 45 H 1.08997 * 110.48679 * 214.37629 * 26 5 4 46 46 H 1.08999 * 110.48169 * 337.01723 * 26 5 4 47 47 H 1.09000 * 110.75551 * 279.62713 * 27 26 5 48 48 H 1.08998 * 110.75581 * 156.25942 * 27 26 5 49 49 H 1.09002 * 110.48622 * 203.37843 * 28 27 26 50 50 H 1.08996 * 110.48747 * 80.73630 * 28 27 26 51 51 H 1.09001 * 110.03246 * 359.95720 * 29 5 4 52 52 H 1.09006 * 110.03185 * 121.38039 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6415 -1.1696 0.1121 6 6 4.2464 -0.3585 -1.0047 7 8 5.2240 0.3279 -0.7949 8 7 3.7009 -0.3957 -2.2365 9 6 4.3509 0.3048 -3.3469 10 1 4.8084 1.2235 -2.9801 11 6 3.3098 0.6442 -4.4161 12 6 3.9817 1.4050 -5.5615 13 6 5.0563 0.5176 -6.1975 14 1 4.5880 -0.3475 -6.6670 15 6 5.8258 1.3183 -7.2499 16 7 5.9806 0.0680 -5.1476 17 6 7.3299 0.2638 -5.2753 18 1 7.7025 1.1338 -5.7954 19 6 8.2187 -0.6562 -4.7362 20 7 7.7779 -1.8127 -4.2883 21 14 10.0404 -0.2527 -4.6464 22 1 10.3360 0.4167 -3.3542 23 1 10.8305 -1.5061 -4.7467 24 1 10.4030 0.6519 -5.7668 25 6 5.4296 -0.5951 -3.9579 26 6 4.0684 -0.5908 1.4768 27 6 4.2683 -1.8384 2.3728 28 6 4.9020 -2.8614 1.3977 29 6 4.1715 -2.6134 0.0618 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6987 -2.0055 -0.0755 34 1 2.8780 -0.8864 -2.3880 35 1 2.8702 -0.2763 -4.8002 36 1 2.5279 1.2644 -3.9777 37 1 4.4427 2.3134 -5.1738 38 1 3.2357 1.6673 -6.3116 39 1 6.5981 0.6889 -7.6922 40 1 5.1385 1.6508 -8.0277 41 1 6.2892 2.1855 -6.7795 42 1 8.3991 -2.4556 -3.9119 43 1 6.2242 -0.7588 -3.2299 44 1 4.9904 -1.5517 -4.2407 45 1 5.0019 -0.0364 1.3809 46 1 3.2840 0.0483 1.8822 47 1 3.3115 -2.2027 2.7468 48 1 4.9475 -1.6177 3.1962 49 1 4.7260 -3.8794 1.7454 50 1 5.9701 -2.6738 1.2890 51 1 3.3419 -3.3122 -0.0456 52 1 4.8663 -2.7273 -0.7704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132353413.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:30 Heat of formation + Delta-G solvation = -89.705046 kcal Electronic energy + Delta-G solvation = -32022.771135 eV Core-core repulsion = 28020.949114 eV Total energy + Delta-G solvation = -4001.822021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.06402 -40.20918 -39.34046 -38.15409 -36.06890 -34.85887 -34.56952 -32.32159 -31.78434 -30.94991 -29.85636 -28.55700 -27.70096 -26.69594 -24.14504 -23.35565 -22.53706 -21.98624 -21.30815 -21.10005 -20.30081 -18.79458 -18.36115 -17.86228 -17.41672 -16.96864 -16.74060 -16.24525 -16.08004 -15.82507 -15.51142 -15.33469 -15.17340 -14.95459 -14.67148 -14.47993 -14.20674 -14.14770 -13.64976 -13.52969 -13.18516 -13.08156 -12.94976 -12.81706 -12.76510 -12.64600 -12.59528 -12.37831 -12.34619 -12.17265 -12.12675 -12.01503 -11.96166 -11.70956 -11.59492 -11.43190 -11.20826 -11.11747 -10.89091 -10.57828 -10.14915 -9.97908 -8.60031 -7.87072 -5.37960 1.37988 1.43078 1.48660 1.59197 1.63409 2.14373 2.24138 2.48229 3.29147 3.41988 3.43817 3.62681 3.79210 3.92264 3.94353 4.03240 4.17877 4.22719 4.32306 4.35740 4.38582 4.44974 4.55803 4.57508 4.66958 4.67351 4.70571 4.73374 4.76692 4.84419 4.93134 4.97422 5.00268 5.01522 5.13195 5.14101 5.15204 5.16097 5.24824 5.30931 5.39973 5.42158 5.49609 5.52173 5.57919 5.67865 5.76355 6.41001 6.52977 6.64738 7.14458 7.28668 7.33926 7.86409 8.37672 9.17817 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011900 B = 0.004313 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.378773 B = 6490.288239 C = 8203.494746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.497 3.503 3 O -0.587 6.587 4 N -0.703 5.703 5 C 0.164 3.836 6 C 0.514 3.486 7 O -0.590 6.590 8 N -0.702 5.702 9 C 0.131 3.869 10 H 0.034 0.966 11 C -0.104 4.104 12 C -0.118 4.118 13 C 0.156 3.844 14 H 0.027 0.973 15 C -0.128 4.128 16 N -0.603 5.603 17 C -0.255 4.255 18 H 0.070 0.930 19 C -0.049 4.049 20 N -0.931 5.931 21 Si 0.957 3.043 22 H -0.298 1.298 23 H -0.289 1.289 24 H -0.262 1.262 25 C 0.188 3.812 26 C -0.119 4.119 27 C -0.108 4.108 28 C -0.121 4.121 29 C -0.116 4.116 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.426 0.574 34 H 0.406 0.594 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.098 0.902 39 H 0.040 0.960 40 H 0.079 0.921 41 H 0.041 0.959 42 H 0.246 0.754 43 H 0.038 0.962 44 H 0.003 0.997 45 H 0.049 0.951 46 H 0.066 0.934 47 H 0.099 0.901 48 H 0.074 0.926 49 H 0.106 0.894 50 H 0.046 0.954 51 H 0.126 0.874 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.568 -4.810 9.130 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.287 3.713 3 O -0.466 6.466 4 N -0.361 5.361 5 C 0.073 3.927 6 C 0.300 3.700 7 O -0.469 6.469 8 N -0.352 5.352 9 C 0.024 3.976 10 H 0.052 0.948 11 C -0.142 4.142 12 C -0.158 4.158 13 C 0.050 3.950 14 H 0.045 0.955 15 C -0.186 4.186 16 N -0.328 5.328 17 C -0.385 4.385 18 H 0.087 0.913 19 C -0.244 4.244 20 N -0.577 5.577 21 Si 0.786 3.214 22 H -0.225 1.225 23 H -0.215 1.215 24 H -0.186 1.186 25 C 0.061 3.939 26 C -0.158 4.158 27 C -0.145 4.145 28 C -0.158 4.158 29 C -0.154 4.154 30 H 0.134 0.866 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.266 0.734 34 H 0.242 0.758 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.021 0.979 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.117 0.883 48 H 0.093 0.907 49 H 0.125 0.875 50 H 0.065 0.935 51 H 0.144 0.856 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.353 -3.713 9.284 21.784 hybrid contribution 1.295 -0.171 -0.004 1.306 sum -18.058 -3.883 9.280 20.671 Atomic orbital electron populations 1.21873 0.87084 1.06934 1.05867 1.21901 0.92624 0.82795 0.74001 1.90823 1.71939 1.33426 1.50419 1.46254 1.04475 1.10299 1.75084 1.21053 0.81973 0.96824 0.92801 1.21297 0.83240 0.80906 0.84539 1.90668 1.29773 1.42976 1.83476 1.45710 1.27876 1.53673 1.07961 1.21500 0.94744 0.94976 0.86354 0.94751 1.21600 0.96443 1.01195 0.94980 1.21964 0.98264 0.97945 0.97580 1.20790 0.90612 0.94581 0.88968 0.95533 1.21721 0.99951 0.99082 0.97811 1.44275 1.02428 1.69356 1.16699 1.19435 0.82769 1.02954 1.33351 0.91258 1.25882 1.01773 0.95001 1.01793 1.70121 1.34349 1.07282 1.45966 0.85416 0.81170 0.77051 0.77796 1.22545 1.21474 1.18621 1.20677 0.93230 0.91258 0.88740 1.22572 1.01142 0.99034 0.93018 1.22489 1.02245 0.92885 0.96918 1.22373 0.98874 1.01211 0.93389 1.22418 1.01889 0.91526 0.99522 0.86632 0.88016 0.88301 0.73392 0.75820 0.90389 0.90932 0.93659 0.88407 0.94064 0.90175 0.93952 0.94503 0.94339 0.97878 0.93181 0.91507 0.88295 0.90690 0.87536 0.93531 0.85627 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 10.39 71.23 0.74 -0.78 16 2 C 0.50 10.61 6.92 87.66 0.61 11.21 16 3 O -0.59 -20.45 15.03 -3.03 -0.05 -20.49 16 4 N -0.70 -12.30 4.45 -423.04 -1.88 -14.18 16 5 C 0.16 4.49 0.86 3.58 0.00 4.50 16 6 C 0.51 20.80 4.85 87.66 0.43 21.22 16 7 O -0.59 -31.35 15.15 -3.03 -0.05 -31.39 16 8 N -0.70 -25.78 4.88 -442.17 -2.16 -27.94 16 9 C 0.13 5.70 2.64 45.07 0.12 5.81 16 10 H 0.03 1.82 7.52 -2.39 -0.02 1.80 16 11 C -0.10 -3.48 5.35 30.62 0.16 -3.32 16 12 C -0.12 -4.04 5.37 30.67 0.16 -3.88 16 13 C 0.16 6.47 3.50 44.97 0.16 6.63 16 14 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 15 C -0.13 -4.83 7.97 71.98 0.57 -4.26 16 16 N -0.60 -31.87 2.98 -675.22 -2.01 -33.88 16 17 C -0.25 -14.78 8.50 84.04 0.71 -14.06 16 18 H 0.07 3.91 6.31 -2.91 -0.02 3.89 16 19 C -0.05 -2.93 5.04 84.86 0.43 -2.50 16 20 N -0.93 -58.19 11.14 21.65 0.24 -57.95 16 21 Si 0.96 48.49 29.57 68.60 2.03 50.52 16 22 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 23 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 24 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 25 C 0.19 9.86 4.82 86.36 0.42 10.27 16 26 C -0.12 -3.44 5.58 31.67 0.18 -3.27 16 27 C -0.11 -2.07 6.91 31.88 0.22 -1.85 16 28 C -0.12 -2.43 6.83 31.67 0.22 -2.22 16 29 C -0.12 -2.58 6.24 31.32 0.20 -2.38 16 30 H 0.12 0.19 7.92 -2.39 -0.02 0.18 16 31 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.43 3.23 7.91 -92.71 -0.73 2.50 16 34 H 0.41 11.45 7.99 -92.71 -0.74 10.71 16 35 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.04 1.70 7.65 -2.38 -0.02 1.68 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.04 1.66 7.43 -2.39 -0.02 1.64 16 42 H 0.25 14.98 8.31 -92.71 -0.77 14.20 16 43 H 0.04 2.41 6.20 -2.39 -0.01 2.40 16 44 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 45 H 0.05 1.91 6.78 -2.39 -0.02 1.89 16 46 H 0.07 1.97 6.82 -2.39 -0.02 1.95 16 47 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.13 1.57 7.44 -2.39 -0.02 1.55 16 52 H 0.05 1.53 7.67 -2.38 -0.02 1.52 16 Total: -1.00 -90.11 398.07 0.90 -89.22 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.55 Total: 24.96 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 5.32 Total: 21.13 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -5.81 Total: -133.95 kcal Atomic # 8 Polarization: -51.79 SS G_CDS: -0.09 Total: -51.88 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.03 Total: 50.52 kcal Total: -90.11 0.90 -89.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132353413.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.487 kcal (2) G-P(sol) polarization free energy of solvation -90.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds