Wall clock time and date at job start Tue Mar 31 2020 21:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.58500 * 2 1 4 4 C 1.53193 * 109.70374 * 239.64198 * 2 1 3 5 5 C 1.53034 * 109.31371 * 185.50846 * 4 2 1 6 6 C 1.53040 * 109.53964 * 61.36263 * 5 4 2 7 7 H 1.08997 * 109.49642 * 58.62311 * 6 5 4 8 8 N 1.46500 * 109.49867 * 178.68640 * 6 5 4 9 9 C 1.34779 * 119.99924 * 205.00436 * 8 6 5 10 10 O 1.21283 * 119.99938 * 359.97438 * 9 8 6 11 11 C 1.50702 * 120.00213 * 179.97438 * 9 8 6 12 12 C 1.52999 * 109.47405 * 179.97438 * 11 9 8 13 13 N 1.46500 * 109.47117 * 180.02562 * 12 11 9 14 14 C 1.34771 * 119.99622 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00695 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99628 * 180.02562 * 14 13 12 17 17 C 1.53784 * 113.61151 * 279.13245 * 16 14 13 18 18 C 1.53958 * 87.01535 * 220.04935 * 17 16 14 19 19 C 1.53773 * 87.11376 * 25.36663 * 18 17 16 20 20 C 1.53619 * 109.24415 * 298.51301 * 6 5 4 21 21 N 1.46924 * 109.58756 * 120.27886 * 2 1 3 22 22 C 1.36936 * 120.63050 * 353.52123 * 21 2 1 23 23 H 1.08002 * 120.00338 * 29.70448 * 22 21 2 24 24 C 1.38811 * 119.99986 * 209.71073 * 22 21 2 25 25 N 1.31621 * 120.00133 * 24.34347 * 24 22 21 26 26 Si 1.86801 * 120.00159 * 204.34298 * 24 22 21 27 27 H 1.48497 * 109.47176 * 89.99996 * 26 24 22 28 28 H 1.48492 * 109.47204 * 329.99816 * 26 24 22 29 29 H 1.48496 * 109.47095 * 209.99844 * 26 24 22 30 30 H 1.09005 * 109.47388 * 299.71819 * 1 2 3 31 31 H 1.08998 * 109.47044 * 59.71736 * 1 2 3 32 32 H 1.09001 * 109.47275 * 179.71992 * 1 2 3 33 33 H 1.09004 * 109.49526 * 305.46172 * 4 2 1 34 34 H 1.08997 * 109.49586 * 65.52468 * 4 2 1 35 35 H 1.09000 * 109.46628 * 181.38791 * 5 4 2 36 36 H 1.09005 * 109.46116 * 301.35741 * 5 4 2 37 37 H 0.96996 * 120.00301 * 25.00132 * 8 6 5 38 38 H 1.08996 * 109.47056 * 299.99933 * 11 9 8 39 39 H 1.09008 * 109.46759 * 59.99631 * 11 9 8 40 40 H 1.08999 * 109.46924 * 300.00574 * 12 11 9 41 41 H 1.09000 * 109.46625 * 59.99897 * 12 11 9 42 42 H 0.96999 * 119.99608 * 359.97438 * 13 12 11 43 43 H 1.08993 * 112.85140 * 50.33144 * 16 14 13 44 44 H 1.08993 * 113.61545 * 334.56536 * 17 16 14 45 45 H 1.08998 * 113.61165 * 105.47586 * 17 16 14 46 46 H 1.08992 * 113.53662 * 270.80508 * 18 17 16 47 47 H 1.09008 * 113.73854 * 139.94495 * 18 17 16 48 48 H 1.09010 * 113.61200 * 220.08855 * 19 18 17 49 49 H 1.08996 * 113.69579 * 89.19750 * 19 18 17 50 50 H 1.09000 * 109.74237 * 295.11959 * 20 6 5 51 51 H 1.08997 * 109.66917 * 174.55058 * 20 6 5 52 52 H 0.97001 * 119.99789 * 4.04228 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5705 -0.8444 -1.1674 6 6 3.9602 -1.6607 0.0671 7 1 3.5042 -2.6490 0.0085 8 7 5.4177 -1.7973 0.1229 9 6 5.9725 -2.8388 0.7742 10 8 5.2651 -3.6626 1.3144 11 6 7.4718 -2.9797 0.8312 12 6 7.8363 -4.2362 1.6243 13 7 9.2939 -4.3728 1.6802 14 6 9.8485 -5.4141 2.3315 15 8 9.1412 -6.2380 2.8718 16 6 11.3479 -5.5543 2.3895 17 6 11.9585 -6.1711 1.1199 18 6 12.9008 -6.9554 2.0512 19 6 11.8205 -6.8129 3.1362 20 6 3.4660 -0.9375 1.3291 21 7 2.0226 -0.6979 1.1954 22 6 1.1534 -1.1124 2.1690 23 1 0.1396 -1.3796 1.9098 24 6 1.5754 -1.1892 3.4892 25 7 2.5841 -0.4510 3.9017 26 14 0.7119 -2.3402 4.6804 27 1 1.3735 -3.6694 4.6519 28 1 -0.7113 -2.4870 4.2831 29 1 0.7872 -1.7792 6.0533 30 1 -0.3634 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3634 -1.0276 -0.0050 33 1 1.6079 -1.7258 -1.2904 34 1 1.7684 -0.1676 -2.1365 35 1 3.9430 -1.3408 -2.0634 36 1 4.0071 0.1519 -1.0962 37 1 5.9835 -1.1383 -0.3088 38 1 7.8678 -3.0610 -0.1811 39 1 7.9006 -2.1047 1.3199 40 1 7.4402 -4.1545 2.6365 41 1 7.4074 -5.1112 1.1359 42 1 9.8596 -3.7141 1.2478 43 1 11.8462 -4.6410 2.7143 44 1 11.2659 -6.8043 0.5656 45 1 12.4718 -5.4476 0.4865 46 1 13.8246 -6.4253 2.2824 47 1 13.0710 -7.9852 1.7371 48 1 12.2226 -6.6068 4.1283 49 1 11.0895 -7.6214 3.1354 50 1 3.9860 0.0146 1.4352 51 1 3.6538 -1.5583 2.2050 52 1 2.9946 0.1892 3.2996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132355446.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:02 Heat of formation + Delta-G solvation = -48.879983 kcal Electronic energy + Delta-G solvation = -29578.100660 eV Core-core repulsion = 25578.048946 eV Total energy + Delta-G solvation = -4000.051713 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -40.47280 -39.65375 -37.96893 -37.60167 -35.25027 -34.49833 -33.06147 -31.57177 -30.37182 -29.64571 -27.25056 -26.04232 -25.93570 -24.94716 -23.54054 -22.15976 -21.18601 -20.89745 -20.13541 -19.64119 -19.22803 -17.70532 -17.03063 -16.95379 -16.10709 -15.87865 -15.57631 -15.56030 -14.98910 -14.60021 -14.34486 -13.98884 -13.82727 -13.48571 -13.45607 -13.28966 -13.12473 -13.00685 -12.81203 -12.42994 -12.35490 -12.02880 -11.83755 -11.63664 -11.48648 -11.36457 -11.23721 -11.05858 -10.90747 -10.77044 -10.64514 -10.59200 -10.32042 -10.06145 -10.01385 -9.88963 -9.83079 -9.49463 -9.23841 -9.19750 -8.64322 -8.28182 -6.80787 -5.99924 -3.18008 2.48687 2.86127 2.91570 3.54530 3.58348 3.64730 3.75654 4.14274 4.22401 4.37252 4.44553 4.60056 4.65445 4.89678 4.94243 4.95402 5.18093 5.21418 5.27131 5.28994 5.30261 5.38103 5.41520 5.49457 5.52946 5.61664 5.62362 5.73426 5.79928 5.84833 5.97730 5.99269 6.05653 6.14070 6.19199 6.27091 6.30694 6.34465 6.38436 6.53002 6.61438 6.77049 6.88561 7.04042 7.11676 7.28030 7.32049 7.78941 8.09615 8.11779 8.52756 8.64856 9.16771 9.91528 10.34535 11.28543 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.002330 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.565545 B =12013.662612 C =13473.081037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.166 3.834 3 H 0.022 0.978 4 C -0.126 4.126 5 C -0.115 4.115 6 C 0.122 3.878 7 H 0.085 0.915 8 N -0.723 5.723 9 C 0.511 3.489 10 O -0.526 6.526 11 C -0.151 4.151 12 C 0.132 3.868 13 N -0.731 5.731 14 C 0.519 3.481 15 O -0.534 6.534 16 C -0.139 4.139 17 C -0.124 4.124 18 C -0.142 4.142 19 C -0.119 4.119 20 C 0.148 3.852 21 N -0.590 5.590 22 C -0.349 4.349 23 H 0.062 0.938 24 C -0.020 4.020 25 N -0.915 5.915 26 Si 1.065 2.935 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.290 1.290 30 H 0.061 0.939 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.393 0.607 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.398 0.602 43 H 0.113 0.887 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.072 0.928 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.015 0.985 51 H 0.084 0.916 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.597 -3.740 -11.367 22.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.060 3.940 3 H 0.040 0.960 4 C -0.166 4.166 5 C -0.153 4.153 6 C 0.017 3.983 7 H 0.103 0.897 8 N -0.374 5.374 9 C 0.296 3.704 10 O -0.401 6.401 11 C -0.192 4.192 12 C 0.008 3.992 13 N -0.383 5.383 14 C 0.305 3.695 15 O -0.410 6.410 16 C -0.160 4.160 17 C -0.162 4.162 18 C -0.180 4.180 19 C -0.157 4.157 20 C 0.021 3.979 21 N -0.315 5.315 22 C -0.478 4.478 23 H 0.079 0.921 24 C -0.223 4.223 25 N -0.555 5.555 26 Si 0.895 3.105 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.217 1.217 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.226 0.774 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.232 0.768 43 H 0.131 0.869 44 H 0.104 0.896 45 H 0.093 0.907 46 H 0.101 0.899 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.114 0.886 50 H 0.032 0.968 51 H 0.103 0.897 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.489 -5.532 -8.984 21.287 hybrid contribution 0.560 1.505 -2.101 2.644 sum 19.048 -4.026 -11.085 22.404 Atomic orbital electron populations 1.21766 0.95719 1.01483 1.00105 1.20477 0.93357 0.93204 0.86945 0.96043 1.22040 0.94222 1.01450 0.98902 1.21668 0.97469 0.99537 0.96668 1.21933 0.77931 1.00903 0.97563 0.89680 1.46093 1.08511 1.26852 1.55940 1.20220 0.89704 0.81684 0.78824 1.90805 1.63522 1.41723 1.44067 1.21794 0.94595 1.00159 1.02640 1.21066 0.79149 0.97145 1.01805 1.46025 1.07929 1.27768 1.56574 1.20529 0.90355 0.80806 0.77831 1.90736 1.63623 1.41643 1.44954 1.22817 0.91962 1.00877 1.00367 1.22860 0.98602 0.99560 0.95164 1.22863 0.97327 1.00941 0.96855 1.22809 0.98036 0.96871 0.97950 1.21336 0.84601 0.96350 0.95598 1.44129 1.02037 1.65243 1.20049 1.19940 0.96183 1.43678 0.88024 0.92065 1.25851 1.00108 1.00404 0.95918 1.70768 1.26190 1.20981 1.37542 0.83510 0.74855 0.76328 0.75787 1.21791 1.21871 1.21675 0.92006 0.94406 0.92734 0.91967 0.92578 0.92860 0.92329 0.77440 0.88638 0.88349 0.90198 0.90546 0.76793 0.86918 0.89646 0.90665 0.89898 0.90953 0.90953 0.88636 0.96752 0.89724 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 7.96 37.16 0.30 -2.26 16 2 C 0.17 3.41 3.49 -67.60 -0.24 3.17 16 3 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.13 -2.13 5.38 -26.61 -0.14 -2.27 16 5 C -0.12 -1.78 5.35 -26.69 -0.14 -1.92 16 6 C 0.12 2.29 2.62 -67.59 -0.18 2.11 16 7 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 8 N -0.72 -10.72 5.08 -53.47 -0.27 -11.00 16 9 C 0.51 8.18 7.80 -10.98 -0.09 8.10 16 10 O -0.53 -11.40 15.64 5.55 0.09 -11.31 16 11 C -0.15 -1.57 5.81 -27.88 -0.16 -1.73 16 12 C 0.13 1.69 4.96 -4.04 -0.02 1.67 16 13 N -0.73 -7.09 5.56 -60.29 -0.33 -7.42 16 14 C 0.52 6.08 7.35 -10.99 -0.08 6.00 16 15 O -0.53 -8.92 15.91 5.56 0.09 -8.84 16 16 C -0.14 -1.08 4.14 -90.95 -0.38 -1.46 16 17 C -0.12 -0.76 7.64 -25.82 -0.20 -0.96 16 18 C -0.14 -0.84 8.09 -25.83 -0.21 -1.05 16 19 C -0.12 -0.97 7.40 -25.92 -0.19 -1.16 16 20 C 0.15 3.49 4.29 -3.49 -0.01 3.48 16 21 N -0.59 -14.63 2.83 -164.51 -0.46 -15.10 16 22 C -0.35 -9.75 8.48 -15.06 -0.13 -9.87 16 23 H 0.06 1.70 6.30 -52.49 -0.33 1.37 16 24 C -0.02 -0.59 4.69 -17.43 -0.08 -0.68 16 25 N -0.92 -28.09 12.51 55.49 0.69 -27.39 16 26 Si 1.07 26.71 29.98 -169.99 -5.10 21.61 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H 0.06 1.29 7.63 -51.93 -0.40 0.90 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.08 7.44 -51.93 -0.39 0.69 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.39 4.27 8.60 -40.82 -0.35 3.92 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.10 0.83 8.14 -51.92 -0.42 0.40 16 40 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 41 H 0.08 1.13 8.10 -51.93 -0.42 0.70 16 42 H 0.40 2.36 8.47 -40.82 -0.35 2.01 16 43 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.62 8.09 -51.93 -0.42 0.20 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 48 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 49 H 0.10 0.97 7.45 -51.93 -0.39 0.59 16 50 H 0.01 0.34 7.84 -51.93 -0.41 -0.06 16 51 H 0.08 2.39 6.41 -51.93 -0.33 2.05 16 52 H 0.27 8.18 6.63 -40.82 -0.27 7.91 16 LS Contribution 408.77 15.07 6.16 6.16 Total: -1.00 -36.79 408.77 -10.24 -47.03 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -9.15 Total: 5.08 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -1.95 Total: 1.17 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.38 Total: -60.91 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.18 Total: -20.14 kcal Atomic # 14 Polarization: 26.71 SS G_CDS: -5.10 Total: 21.61 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.79 -10.24 -47.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132355446.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.850 kcal (2) G-P(sol) polarization free energy of solvation -36.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds