Wall clock time and date at job start Tue Mar 31 2020 21:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.58500 * 2 1 4 4 C 1.53193 * 109.70374 * 239.64198 * 2 1 3 5 5 C 1.53034 * 109.31371 * 185.50846 * 4 2 1 6 6 C 1.53040 * 109.53964 * 61.36263 * 5 4 2 7 7 H 1.08997 * 109.49642 * 58.62311 * 6 5 4 8 8 N 1.46500 * 109.49867 * 178.68640 * 6 5 4 9 9 C 1.34779 * 119.99924 * 205.00436 * 8 6 5 10 10 O 1.21283 * 119.99938 * 359.97438 * 9 8 6 11 11 C 1.50702 * 120.00213 * 179.97438 * 9 8 6 12 12 C 1.52999 * 109.47405 * 179.97438 * 11 9 8 13 13 N 1.46500 * 109.47117 * 180.02562 * 12 11 9 14 14 C 1.34771 * 119.99622 * 180.02562 * 13 12 11 15 15 O 1.21281 * 120.00695 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99628 * 180.02562 * 14 13 12 17 17 C 1.53784 * 113.61151 * 279.13245 * 16 14 13 18 18 C 1.53958 * 87.01535 * 220.04935 * 17 16 14 19 19 C 1.53773 * 87.11376 * 25.36663 * 18 17 16 20 20 C 1.53619 * 109.24415 * 298.51301 * 6 5 4 21 21 N 1.46924 * 109.58756 * 120.27886 * 2 1 3 22 22 C 1.36936 * 120.63050 * 353.52123 * 21 2 1 23 23 H 1.08002 * 120.00338 * 29.70448 * 22 21 2 24 24 C 1.38811 * 119.99986 * 209.71073 * 22 21 2 25 25 N 1.31621 * 120.00133 * 24.34347 * 24 22 21 26 26 Si 1.86801 * 120.00159 * 204.34298 * 24 22 21 27 27 H 1.48497 * 109.47176 * 89.99996 * 26 24 22 28 28 H 1.48492 * 109.47204 * 329.99816 * 26 24 22 29 29 H 1.48496 * 109.47095 * 209.99844 * 26 24 22 30 30 H 1.09005 * 109.47388 * 299.71819 * 1 2 3 31 31 H 1.08998 * 109.47044 * 59.71736 * 1 2 3 32 32 H 1.09001 * 109.47275 * 179.71992 * 1 2 3 33 33 H 1.09004 * 109.49526 * 305.46172 * 4 2 1 34 34 H 1.08997 * 109.49586 * 65.52468 * 4 2 1 35 35 H 1.09000 * 109.46628 * 181.38791 * 5 4 2 36 36 H 1.09005 * 109.46116 * 301.35741 * 5 4 2 37 37 H 0.96996 * 120.00301 * 25.00132 * 8 6 5 38 38 H 1.08996 * 109.47056 * 299.99933 * 11 9 8 39 39 H 1.09008 * 109.46759 * 59.99631 * 11 9 8 40 40 H 1.08999 * 109.46924 * 300.00574 * 12 11 9 41 41 H 1.09000 * 109.46625 * 59.99897 * 12 11 9 42 42 H 0.96999 * 119.99608 * 359.97438 * 13 12 11 43 43 H 1.08993 * 112.85140 * 50.33144 * 16 14 13 44 44 H 1.08993 * 113.61545 * 334.56536 * 17 16 14 45 45 H 1.08998 * 113.61165 * 105.47586 * 17 16 14 46 46 H 1.08992 * 113.53662 * 270.80508 * 18 17 16 47 47 H 1.09008 * 113.73854 * 139.94495 * 18 17 16 48 48 H 1.09010 * 113.61200 * 220.08855 * 19 18 17 49 49 H 1.08996 * 113.69579 * 89.19750 * 19 18 17 50 50 H 1.09000 * 109.74237 * 295.11959 * 20 6 5 51 51 H 1.08997 * 109.66917 * 174.55058 * 20 6 5 52 52 H 0.97001 * 119.99789 * 4.04228 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0465 -0.7289 -1.2445 5 6 3.5705 -0.8444 -1.1674 6 6 3.9602 -1.6607 0.0671 7 1 3.5042 -2.6490 0.0085 8 7 5.4177 -1.7973 0.1229 9 6 5.9725 -2.8388 0.7742 10 8 5.2651 -3.6626 1.3144 11 6 7.4718 -2.9797 0.8312 12 6 7.8363 -4.2362 1.6243 13 7 9.2939 -4.3728 1.6802 14 6 9.8485 -5.4141 2.3315 15 8 9.1412 -6.2380 2.8718 16 6 11.3479 -5.5543 2.3895 17 6 11.9585 -6.1711 1.1199 18 6 12.9008 -6.9554 2.0512 19 6 11.8205 -6.8129 3.1362 20 6 3.4660 -0.9375 1.3291 21 7 2.0226 -0.6979 1.1954 22 6 1.1534 -1.1124 2.1690 23 1 0.1396 -1.3796 1.9098 24 6 1.5754 -1.1892 3.4892 25 7 2.5841 -0.4510 3.9017 26 14 0.7119 -2.3402 4.6804 27 1 1.3735 -3.6694 4.6519 28 1 -0.7113 -2.4870 4.2831 29 1 0.7872 -1.7792 6.0533 30 1 -0.3634 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3634 -1.0276 -0.0050 33 1 1.6079 -1.7258 -1.2904 34 1 1.7684 -0.1676 -2.1365 35 1 3.9430 -1.3408 -2.0634 36 1 4.0071 0.1519 -1.0962 37 1 5.9835 -1.1383 -0.3088 38 1 7.8678 -3.0610 -0.1811 39 1 7.9006 -2.1047 1.3199 40 1 7.4402 -4.1545 2.6365 41 1 7.4074 -5.1112 1.1359 42 1 9.8596 -3.7141 1.2478 43 1 11.8462 -4.6410 2.7143 44 1 11.2659 -6.8043 0.5656 45 1 12.4718 -5.4476 0.4865 46 1 13.8246 -6.4253 2.2824 47 1 13.0710 -7.9852 1.7371 48 1 12.2226 -6.6068 4.1283 49 1 11.0895 -7.6214 3.1354 50 1 3.9860 0.0146 1.4352 51 1 3.6538 -1.5583 2.2050 52 1 2.9946 0.1892 3.2996 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132355446.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:58 Heat of formation + Delta-G solvation = -76.685290 kcal Electronic energy + Delta-G solvation = -29579.306388 eV Core-core repulsion = 25578.048946 eV Total energy + Delta-G solvation = -4001.257442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.38568 -40.97817 -39.46717 -38.45515 -36.39047 -36.03585 -34.90119 -32.83851 -31.71833 -31.45441 -28.16265 -27.55717 -26.69868 -26.51328 -24.67308 -23.86737 -22.41169 -22.07458 -21.47420 -20.94124 -20.25200 -18.98155 -18.58541 -18.11210 -17.19273 -17.13144 -16.76724 -16.58695 -16.37488 -15.78662 -15.67850 -15.51311 -15.32313 -15.18844 -14.96645 -14.61120 -14.43181 -14.09402 -13.81434 -13.42462 -13.40440 -13.17424 -13.04968 -12.93661 -12.91094 -12.73741 -12.59885 -12.50987 -12.21537 -12.15607 -11.96478 -11.87812 -11.68912 -11.57145 -11.43620 -11.29156 -11.14437 -10.98639 -10.71493 -10.47086 -10.23202 -10.12727 -8.87580 -8.22184 -5.38731 1.49047 1.56976 1.58979 1.63071 1.72842 1.87093 2.43723 2.62258 3.24444 3.49210 3.52826 3.58058 3.66411 3.82573 3.83763 3.92097 3.98375 4.00063 4.03370 4.14761 4.24555 4.27001 4.41938 4.48550 4.59750 4.67650 4.70331 4.78508 4.80489 4.80824 4.86408 4.91055 4.91175 4.96698 5.04182 5.08756 5.10106 5.13335 5.18605 5.19584 5.22488 5.33646 5.44128 5.49494 5.53351 5.61120 5.92164 6.41382 6.52226 6.60127 7.08743 7.24642 7.33020 7.80442 8.24334 9.02257 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.002330 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.565545 B =12013.662612 C =13473.081037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.154 3.846 3 H 0.024 0.976 4 C -0.119 4.119 5 C -0.105 4.105 6 C 0.136 3.864 7 H 0.047 0.953 8 N -0.706 5.706 9 C 0.502 3.498 10 O -0.594 6.594 11 C -0.129 4.129 12 C 0.138 3.862 13 N -0.710 5.710 14 C 0.510 3.490 15 O -0.595 6.595 16 C -0.132 4.132 17 C -0.116 4.116 18 C -0.130 4.130 19 C -0.134 4.134 20 C 0.159 3.841 21 N -0.611 5.611 22 C -0.340 4.340 23 H 0.059 0.941 24 C -0.079 4.079 25 N -0.947 5.947 26 Si 1.104 2.896 27 H -0.301 1.301 28 H -0.265 1.265 29 H -0.291 1.291 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.418 0.582 38 H 0.146 0.854 39 H 0.131 0.869 40 H 0.036 0.964 41 H 0.049 0.951 42 H 0.423 0.577 43 H 0.146 0.854 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.063 0.937 50 H 0.009 0.991 51 H 0.027 0.973 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.046 -2.009 -15.000 26.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 H 0.042 0.958 4 C -0.158 4.158 5 C -0.143 4.143 6 C 0.029 3.971 7 H 0.066 0.934 8 N -0.359 5.359 9 C 0.289 3.711 10 O -0.474 6.474 11 C -0.169 4.169 12 C 0.013 3.987 13 N -0.363 5.363 14 C 0.298 3.702 15 O -0.476 6.476 16 C -0.153 4.153 17 C -0.154 4.154 18 C -0.168 4.168 19 C -0.172 4.172 20 C 0.031 3.969 21 N -0.336 5.336 22 C -0.470 4.470 23 H 0.077 0.923 24 C -0.276 4.276 25 N -0.589 5.589 26 Si 0.931 3.069 27 H -0.229 1.229 28 H -0.190 1.190 29 H -0.217 1.217 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.256 0.744 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.261 0.739 43 H 0.163 0.837 44 H 0.088 0.912 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.026 0.974 51 H 0.046 0.954 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 20.984 -3.720 -12.712 24.814 hybrid contribution -0.232 0.980 -1.006 1.423 sum 20.751 -2.741 -13.718 25.026 Atomic orbital electron populations 1.21701 0.94955 1.00905 1.00849 1.20815 0.94230 0.93330 0.86685 0.95816 1.21948 0.95000 1.00687 0.98200 1.21633 0.96682 1.00167 0.95791 1.21431 0.79987 0.98799 0.96912 0.93421 1.45853 1.07209 1.27256 1.55568 1.21281 0.91985 0.80661 0.77177 1.90790 1.65607 1.44227 1.46740 1.21725 0.90039 0.99749 1.05361 1.20739 0.80856 0.97627 0.99522 1.45792 1.06689 1.27843 1.55947 1.21426 0.92077 0.80037 0.76634 1.90715 1.65363 1.43929 1.47570 1.22973 0.88682 1.02006 1.01649 1.22854 0.98128 0.99755 0.94682 1.22859 0.97325 1.01443 0.95146 1.22852 0.98602 0.96450 0.99339 1.21101 0.84511 0.95295 0.95961 1.44406 1.02147 1.66272 1.20806 1.20164 0.96495 1.41638 0.88672 0.92319 1.26959 1.00841 1.01667 0.98089 1.70866 1.28030 1.22549 1.37499 0.82975 0.75452 0.74162 0.74328 1.22877 1.18967 1.21731 0.94709 0.90141 0.93952 0.93333 0.88399 0.89152 0.90330 0.74394 0.83602 0.85099 0.94555 0.93252 0.73908 0.83684 0.91250 0.87607 0.87575 0.90879 0.90484 0.91811 0.97359 0.95449 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.70 7.96 71.98 0.57 -4.13 16 2 C 0.15 6.11 3.49 44.98 0.16 6.27 16 3 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.12 -3.62 5.38 30.67 0.16 -3.45 16 5 C -0.10 -2.86 5.35 30.62 0.16 -2.70 16 6 C 0.14 5.03 2.62 45.21 0.12 5.15 16 7 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 8 N -0.71 -19.89 5.08 -441.48 -2.24 -22.13 16 9 C 0.50 16.05 7.80 87.66 0.68 16.73 16 10 O -0.59 -27.48 15.64 -3.04 -0.05 -27.53 16 11 C -0.13 -2.38 5.81 29.85 0.17 -2.21 16 12 C 0.14 3.61 4.96 86.38 0.43 4.04 16 13 N -0.71 -12.90 5.56 -463.06 -2.57 -15.47 16 14 C 0.51 12.03 7.35 87.66 0.64 12.68 16 15 O -0.60 -21.46 15.91 -3.03 -0.05 -21.51 16 16 C -0.13 -1.82 4.14 -11.01 -0.05 -1.87 16 17 C -0.12 -1.13 7.64 31.18 0.24 -0.89 16 18 C -0.13 -1.23 8.09 31.18 0.25 -0.98 16 19 C -0.13 -2.15 7.40 31.12 0.23 -1.92 16 20 C 0.16 7.73 4.29 86.51 0.37 8.10 16 21 N -0.61 -31.00 2.83 -674.40 -1.91 -32.90 16 22 C -0.34 -19.61 8.48 84.03 0.71 -18.90 16 23 H 0.06 3.36 6.30 -2.91 -0.02 3.34 16 24 C -0.08 -4.81 4.69 84.86 0.40 -4.41 16 25 N -0.95 -61.10 12.51 21.65 0.27 -60.83 16 26 Si 1.10 56.28 29.98 68.60 2.06 58.33 16 27 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 30 H 0.03 1.44 7.63 -2.38 -0.02 1.42 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.04 1.64 7.44 -2.39 -0.02 1.63 16 33 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 37 H 0.42 7.50 8.60 -92.71 -0.80 6.70 16 38 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 41 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 42 H 0.42 3.47 8.47 -92.71 -0.79 2.68 16 43 H 0.15 1.09 8.14 -2.39 -0.02 1.08 16 44 H 0.07 0.91 8.09 -2.39 -0.02 0.90 16 45 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 48 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 49 H 0.06 1.43 7.45 -2.39 -0.02 1.41 16 50 H 0.01 0.42 7.84 -2.39 -0.02 0.40 16 51 H 0.03 1.63 6.41 -2.39 -0.02 1.62 16 52 H 0.25 16.43 6.63 -92.71 -0.62 15.81 16 Total: -1.00 -92.86 408.77 0.26 -92.60 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -0.51 Total: 17.94 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.26 Total: 11.51 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -6.45 Total: -131.34 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -0.10 Total: -49.04 kcal Atomic # 14 Polarization: 56.28 SS G_CDS: 2.06 Total: 58.33 kcal Total: -92.86 0.26 -92.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132355446.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.910 kcal (2) G-P(sol) polarization free energy of solvation -92.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds