Wall clock time and date at job start Tue Mar 31 2020 22:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 115.56348 * 2 1 4 4 C 1.53072 * 117.51258 * 214.29052 * 2 1 3 5 5 C 1.53003 * 117.49919 * 145.68032 * 2 1 3 6 6 H 1.09000 * 117.49952 * 0.02562 * 5 2 1 7 7 C 1.50694 * 117.50237 * 215.00156 * 5 2 1 8 8 O 1.21284 * 119.99811 * 0.09189 * 7 5 2 9 9 N 1.34772 * 120.00081 * 180.08733 * 7 5 2 10 10 C 1.46924 * 120.63260 * 354.99042 * 9 7 5 11 11 C 1.53191 * 108.77574 * 233.58429 * 10 9 7 12 12 C 1.53042 * 109.31513 * 305.36064 * 11 10 9 13 13 C 1.53045 * 109.53406 * 61.36238 * 12 11 10 14 14 C 1.46929 * 120.63102 * 174.70493 * 9 7 5 15 15 H 1.09003 * 109.58832 * 246.20310 * 14 9 7 16 16 C 1.52999 * 109.58501 * 6.62897 * 14 9 7 17 17 N 1.46905 * 109.47113 * 181.02463 * 16 14 9 18 18 C 1.46904 * 110.99380 * 75.64614 * 17 16 14 19 19 C 1.46901 * 111.00182 * 199.60099 * 17 16 14 20 20 C 1.50690 * 109.46878 * 170.00545 * 19 17 16 21 21 O 1.21293 * 120.00518 * 359.97438 * 20 19 17 22 22 N 1.34781 * 119.99795 * 179.97438 * 20 19 17 23 23 C 1.37106 * 119.99894 * 179.97438 * 22 20 19 24 24 H 1.07993 * 119.99623 * 359.97438 * 23 22 20 25 25 C 1.38948 * 119.99644 * 180.02562 * 23 22 20 26 26 N 1.31408 * 120.00039 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99869 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46827 * 0.02562 * 27 25 23 29 29 H 1.48494 * 109.46980 * 120.00030 * 27 25 23 30 30 H 1.48508 * 109.47076 * 240.00406 * 27 25 23 31 31 H 1.09005 * 109.46965 * 274.31692 * 1 2 3 32 32 H 1.08998 * 109.47279 * 34.31390 * 1 2 3 33 33 H 1.08998 * 109.47121 * 154.31871 * 1 2 3 34 34 H 1.09009 * 117.49029 * 145.04007 * 4 2 1 35 35 H 1.08999 * 117.53078 * 359.97438 * 4 2 1 36 36 H 1.09001 * 109.58742 * 353.36729 * 10 9 7 37 37 H 1.08995 * 109.58958 * 113.65143 * 10 9 7 38 38 H 1.08995 * 109.50284 * 65.31464 * 11 10 9 39 39 H 1.09003 * 109.50189 * 185.37771 * 11 10 9 40 40 H 1.08992 * 109.46254 * 181.38547 * 12 11 10 41 41 H 1.09001 * 109.45878 * 301.36215 * 12 11 10 42 42 H 1.08997 * 109.49464 * 58.59107 * 13 12 11 43 43 H 1.08995 * 109.49528 * 178.68391 * 13 12 11 44 44 H 1.08997 * 109.47234 * 301.02772 * 16 14 9 45 45 H 1.09007 * 109.47216 * 61.02921 * 16 14 9 46 46 H 1.08998 * 109.47283 * 54.00587 * 18 17 16 47 47 H 1.09002 * 109.46663 * 173.99957 * 18 17 16 48 48 H 1.08996 * 109.47751 * 294.00193 * 18 17 16 49 49 H 1.09005 * 109.46884 * 290.00494 * 19 17 16 50 50 H 1.09001 * 109.46992 * 50.00278 * 19 17 16 51 51 H 0.97002 * 119.99810 * 0.02562 * 22 20 19 52 52 H 0.97003 * 119.99950 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7649 5 6 2.2365 -1.1209 0.7652 6 1 1.6113 -1.8585 1.2682 7 6 3.5290 -0.7809 1.4614 8 8 3.9705 0.3473 1.4033 9 7 4.1943 -1.7303 2.1486 10 6 3.6193 -3.0715 2.3204 11 6 3.6003 -3.4121 3.8139 12 6 5.0106 -3.2548 4.3870 13 6 5.4685 -1.8031 4.2284 14 6 5.5112 -1.4459 2.7349 15 1 6.2713 -2.0459 2.2344 16 6 5.8358 0.0401 2.5699 17 7 7.1633 0.3170 3.1349 18 6 8.2261 -0.1638 2.2419 19 6 7.3249 1.7484 3.4227 20 6 8.5862 1.9613 4.2194 21 8 9.2818 1.0138 4.5185 22 7 8.9413 3.2046 4.5997 23 6 10.0885 3.3982 5.3250 24 1 10.7074 2.5544 5.5919 25 6 10.4543 4.6800 5.7174 26 7 9.7003 5.7065 5.3938 27 14 12.0170 4.9438 6.7063 28 1 12.6820 3.6366 6.9390 29 1 12.9335 5.8380 5.9543 30 1 11.6779 5.5665 8.0112 31 1 -0.3633 0.0774 1.0248 32 1 -0.3634 0.8488 -0.5793 33 1 -0.3633 -0.9261 -0.4453 34 1 3.1725 -0.8757 -1.2678 35 1 1.6126 -1.8600 -1.2678 36 1 2.6020 -3.0857 1.9295 37 1 4.2268 -3.8009 1.7848 38 1 2.9196 -2.7370 4.3324 39 1 3.2652 -4.4406 3.9483 40 1 5.0048 -3.5203 5.4440 41 1 5.6957 -3.9119 3.8512 42 1 4.7701 -1.1431 4.7430 43 1 6.4635 -1.6865 4.6577 44 1 5.8308 0.2978 1.5108 45 1 5.0872 0.6358 3.0924 46 1 8.0822 0.2565 1.2466 47 1 9.1957 0.1472 2.6309 48 1 8.1892 -1.2517 2.1857 49 1 7.3889 2.3024 2.4861 50 1 6.4685 2.1026 3.9966 51 1 8.3847 3.9623 4.3608 52 1 9.9559 6.6013 5.6675 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158311214.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:03 Heat of formation + Delta-G solvation = -49.001344 kcal Electronic energy + Delta-G solvation = -30349.764893 eV Core-core repulsion = 26349.707917 eV Total energy + Delta-G solvation = -4000.056976 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.80384 -40.35227 -39.07716 -37.65532 -37.42962 -35.87078 -33.85420 -33.30716 -32.74331 -29.62274 -29.51830 -28.24496 -26.90260 -26.02011 -24.99826 -23.93733 -22.31694 -21.80181 -21.22919 -21.01777 -19.95226 -19.74911 -18.24003 -17.58539 -17.28513 -16.83660 -16.58233 -16.33643 -16.24558 -15.74854 -15.49063 -15.39923 -15.08697 -14.96518 -14.70795 -14.48151 -14.41805 -14.02534 -13.97394 -13.78218 -13.61005 -13.48800 -13.13935 -13.07237 -12.88970 -12.68391 -12.65690 -12.50129 -12.41233 -12.30972 -12.11627 -11.94177 -11.90743 -11.60935 -11.47290 -11.42532 -11.26420 -10.90683 -10.49062 -10.27200 -10.01364 -9.58410 -9.08068 -8.47056 -5.96275 1.35768 1.40226 1.47494 1.55345 1.85728 2.02648 2.28209 2.78544 2.88189 3.18914 3.38521 3.51179 3.74977 3.77291 3.82793 3.93108 3.99136 4.07571 4.17145 4.21701 4.23340 4.28293 4.37205 4.43790 4.45306 4.50203 4.55950 4.62117 4.69167 4.73639 4.79530 4.87302 4.91433 4.96147 4.98250 5.00686 5.06729 5.10833 5.12870 5.23374 5.25328 5.28190 5.40157 5.43306 5.47107 5.62714 5.85524 6.05526 6.14507 6.45932 6.59001 7.11381 7.19813 7.54174 8.09463 8.70964 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015979 B = 0.002456 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.892368 B =11397.274786 C =12505.780388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.135 4.135 3 H 0.086 0.914 4 C -0.133 4.133 5 C -0.192 4.192 6 H 0.152 0.848 7 C 0.529 3.471 8 O -0.577 6.577 9 N -0.603 5.603 10 C 0.104 3.896 11 C -0.130 4.130 12 C -0.119 4.119 13 C -0.116 4.116 14 C 0.158 3.842 15 H 0.076 0.924 16 C 0.082 3.918 17 N -0.534 5.534 18 C 0.032 3.968 19 C 0.063 3.937 20 C 0.446 3.554 21 O -0.608 6.608 22 N -0.576 5.576 23 C -0.330 4.330 24 H 0.081 0.919 25 C -0.017 4.017 26 N -0.924 5.924 27 Si 0.996 3.004 28 H -0.272 1.272 29 H -0.271 1.271 30 H -0.270 1.270 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.103 0.897 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.063 0.937 46 H 0.020 0.980 47 H 0.058 0.942 48 H 0.078 0.922 49 H 0.056 0.944 50 H 0.096 0.904 51 H 0.394 0.606 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.423 -19.628 -11.209 31.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.153 4.153 3 H 0.104 0.896 4 C -0.170 4.170 5 C -0.212 4.212 6 H 0.170 0.830 7 C 0.319 3.681 8 O -0.457 6.457 9 N -0.335 5.335 10 C -0.017 4.017 11 C -0.168 4.168 12 C -0.156 4.156 13 C -0.155 4.155 14 C 0.054 3.946 15 H 0.093 0.907 16 C -0.045 4.045 17 N -0.260 5.260 18 C -0.116 4.116 19 C -0.068 4.068 20 C 0.233 3.767 21 O -0.494 6.494 22 N -0.213 5.213 23 C -0.459 4.459 24 H 0.099 0.901 25 C -0.216 4.216 26 N -0.565 5.565 27 Si 0.820 3.180 28 H -0.196 1.196 29 H -0.196 1.196 30 H -0.196 1.196 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.153 0.847 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.097 0.903 49 H 0.074 0.926 50 H 0.114 0.886 51 H 0.227 0.773 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.687 -19.752 -10.557 30.488 hybrid contribution 0.831 1.614 -0.124 1.820 sum -19.856 -18.138 -10.680 28.936 Atomic orbital electron populations 1.21379 0.90270 1.03323 1.02449 1.22405 0.96621 0.94055 1.02261 0.89586 1.23176 1.02661 1.01388 0.89816 1.22429 0.96513 1.05936 0.96362 0.83033 1.20385 0.85595 0.84008 0.78063 1.90741 1.68643 1.22931 1.63374 1.48249 1.18833 1.13643 1.52781 1.22098 1.00760 0.81585 0.97301 1.21923 0.96601 1.03359 0.94904 1.21548 0.97389 0.94904 1.01799 1.21837 1.01674 0.97573 0.94387 1.21194 0.83888 0.95052 0.94418 0.90652 1.22564 0.88073 0.95807 0.98055 1.61513 1.03536 1.14305 1.46608 1.22393 0.95493 1.00849 0.92882 1.21622 0.96184 0.90273 0.98750 1.20577 0.88657 0.82913 0.84507 1.90446 1.56485 1.41689 1.60777 1.41966 1.23173 1.07292 1.48905 1.19718 1.01276 0.94115 1.30813 0.90083 1.26108 1.02418 0.94257 0.98807 1.69700 1.39815 0.99829 1.47136 0.84825 0.77123 0.78253 0.77834 1.19611 1.19574 1.19560 0.91996 0.91561 0.90365 0.89909 0.84719 0.87035 0.89758 0.92232 0.87866 0.91302 0.91077 0.93485 0.91758 0.93566 0.91855 0.96116 0.92314 0.90346 0.92648 0.88595 0.77262 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.19 71.98 0.73 -0.45 16 2 C -0.13 -2.11 5.92 -10.77 -0.06 -2.17 16 3 H 0.09 1.90 7.67 -2.39 -0.02 1.88 16 4 C -0.13 -1.64 9.88 30.62 0.30 -1.34 16 5 C -0.19 -2.84 4.97 -11.54 -0.06 -2.90 16 6 H 0.15 1.30 6.39 -2.39 -0.02 1.29 16 7 C 0.53 12.39 7.39 87.66 0.65 13.03 16 8 O -0.58 -18.62 11.66 -3.04 -0.04 -18.66 16 9 N -0.60 -12.22 2.97 -794.24 -2.36 -14.58 16 10 C 0.10 1.16 6.32 86.36 0.55 1.71 16 11 C -0.13 -1.48 6.08 30.67 0.19 -1.30 16 12 C -0.12 -2.00 5.88 30.62 0.18 -1.82 16 13 C -0.12 -2.92 5.18 30.82 0.16 -2.76 16 14 C 0.16 4.05 3.00 45.12 0.14 4.19 16 15 H 0.08 1.89 7.02 -2.39 -0.02 1.87 16 16 C 0.08 2.68 2.84 86.30 0.24 2.93 16 17 N -0.53 -20.06 3.88 -927.03 -3.60 -23.66 16 18 C 0.03 1.15 9.03 127.69 1.15 2.30 16 19 C 0.06 2.61 5.43 85.55 0.46 3.08 16 20 C 0.45 22.97 7.41 87.65 0.65 23.62 16 21 O -0.61 -34.95 13.97 -3.07 -0.04 -34.99 16 22 N -0.58 -31.61 5.29 -306.99 -1.62 -33.23 16 23 C -0.33 -19.49 9.68 84.04 0.81 -18.68 16 24 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 25 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 26 N -0.92 -52.06 13.05 21.66 0.28 -51.77 16 27 Si 1.00 44.37 29.55 68.60 2.03 46.40 16 28 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 30 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.47 7.90 -2.39 -0.02 0.45 16 34 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.13 0.82 8.05 -2.39 -0.02 0.81 16 36 H 0.11 0.68 5.48 -2.39 -0.01 0.67 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.06 1.98 7.85 -2.39 -0.02 1.96 16 44 H 0.05 1.65 6.09 -2.39 -0.01 1.64 16 45 H 0.06 2.30 6.71 -2.38 -0.02 2.28 16 46 H 0.02 0.70 7.96 -2.39 -0.02 0.68 16 47 H 0.06 2.54 5.79 -2.39 -0.01 2.53 16 48 H 0.08 2.43 7.08 -2.39 -0.02 2.42 16 49 H 0.06 2.19 8.12 -2.38 -0.02 2.17 16 50 H 0.10 3.75 7.83 -2.39 -0.02 3.73 16 51 H 0.39 20.87 7.90 -92.71 -0.73 20.14 16 52 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -74.49 402.99 1.40 -73.08 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: 0.18 Total: 38.42 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: 6.56 Total: 18.99 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -7.29 Total: -123.24 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.08 Total: -53.65 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -74.49 1.40 -73.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158311214.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.082 kcal (2) G-P(sol) polarization free energy of solvation -74.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds