Wall clock time and date at job start Tue Mar 31 2020 22:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 115.55970 * 2 1 4 4 C 1.53072 * 117.51233 * 145.70335 * 2 1 3 5 5 C 1.53001 * 59.98494 * 107.47439 * 4 2 1 6 6 H 1.09006 * 117.49870 * 107.49864 * 5 4 2 7 7 C 1.50701 * 117.50101 * 252.49927 * 5 4 2 8 8 O 1.21277 * 120.00353 * 68.74388 * 7 5 4 9 9 N 1.34781 * 119.99361 * 248.74576 * 7 5 4 10 10 C 1.46507 * 119.99189 * 179.97438 * 9 7 5 11 11 C 1.53001 * 109.46856 * 179.97438 * 10 9 7 12 12 C 1.50697 * 109.47470 * 179.97438 * 11 10 9 13 13 O 1.21285 * 119.99590 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00501 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99939 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46667 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46873 * 185.25880 * 16 15 14 18 18 C 1.52999 * 115.55067 * 295.07449 * 17 16 15 19 19 N 1.46501 * 109.47189 * 295.16132 * 18 17 16 20 20 C 1.36937 * 119.99797 * 174.54987 * 19 18 17 21 21 H 1.07997 * 120.00154 * 0.27687 * 20 19 18 22 22 C 1.38817 * 119.99654 * 180.27418 * 20 19 18 23 23 N 1.31614 * 120.00017 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99822 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47450 * 90.00192 * 24 22 20 26 26 H 1.48498 * 109.47275 * 209.99850 * 24 22 20 27 27 H 1.48499 * 109.47419 * 329.99991 * 24 22 20 28 28 C 1.53003 * 117.50125 * 80.75071 * 17 16 15 29 29 C 1.53002 * 117.49902 * 149.41094 * 17 16 15 30 30 H 1.09002 * 109.47260 * 205.68695 * 1 2 3 31 31 H 1.09002 * 109.47303 * 325.69165 * 1 2 3 32 32 H 1.08998 * 109.47381 * 85.68773 * 1 2 3 33 33 H 1.08998 * 117.51482 * 0.02562 * 4 2 1 34 34 H 1.08997 * 117.49008 * 214.96152 * 4 2 1 35 35 H 0.96994 * 120.00349 * 359.97438 * 9 7 5 36 36 H 1.09002 * 109.47192 * 60.00554 * 10 9 7 37 37 H 1.08993 * 109.47186 * 299.99868 * 10 9 7 38 38 H 1.09004 * 109.47128 * 59.99738 * 11 10 9 39 39 H 1.09006 * 109.47460 * 300.00197 * 11 10 9 40 40 H 0.96999 * 119.99303 * 359.97438 * 14 12 11 41 41 H 1.08993 * 109.47211 * 60.00259 * 15 14 12 42 42 H 1.08993 * 109.46943 * 299.99727 * 15 14 12 43 43 H 1.09001 * 109.47647 * 65.25284 * 16 15 14 44 44 H 1.09001 * 109.47404 * 305.25226 * 16 15 14 45 45 H 1.08993 * 109.47515 * 175.16198 * 18 17 16 46 46 H 1.09001 * 109.47096 * 55.15962 * 18 17 16 47 47 H 0.96997 * 119.99755 * 354.82843 * 19 18 17 48 48 H 0.97009 * 119.99657 * 179.97438 * 23 22 20 49 49 H 1.08999 * 117.49659 * 215.00459 * 28 17 16 50 50 H 1.08997 * 117.49783 * 0.02562 * 28 17 16 51 51 H 1.08998 * 117.49792 * 359.96697 * 29 17 16 52 52 H 1.08997 * 117.49892 * 144.97270 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1216 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 3.1713 -0.8751 -1.2687 7 6 1.3719 -2.1406 -1.4609 8 8 0.1638 -2.0524 -1.4026 9 7 1.9416 -3.1506 -2.1479 10 6 1.1011 -4.1421 -2.8239 11 6 1.9901 -5.1714 -3.5247 12 6 1.1257 -6.1917 -4.2195 13 8 -0.0825 -6.1039 -4.1605 14 7 1.6952 -7.2018 -4.9065 15 6 0.8548 -8.1932 -5.5824 16 6 1.7439 -9.2233 -6.2820 17 6 0.8713 -10.1816 -7.0952 18 6 -0.0783 -11.0620 -6.2804 19 7 0.7015 -11.9749 -5.4410 20 6 0.0668 -12.7856 -4.5382 21 1 -1.0090 -12.7553 -4.4482 22 6 0.8062 -13.6466 -3.7388 23 7 2.1173 -13.6832 -3.8482 24 14 -0.0596 -14.7530 -2.5078 25 1 -0.3983 -16.0453 -3.1563 26 1 0.8357 -15.0004 -1.3492 27 1 -1.3047 -14.0931 -2.0391 28 6 0.3916 -9.7073 -8.4685 29 6 1.4764 -10.7824 -8.3656 30 1 -0.3634 -0.9261 0.4454 31 1 -0.3634 0.8489 0.5792 32 1 -0.3634 0.0773 -1.0247 33 1 1.6123 -1.8597 1.2679 34 1 3.1723 -0.8756 1.2679 35 1 2.9078 -3.2209 -2.1949 36 1 0.4726 -3.6432 -3.5617 37 1 0.4711 -4.6450 -2.0904 38 1 2.6190 -5.6703 -2.7873 39 1 2.6199 -4.6682 -4.2583 40 1 2.6615 -7.2717 -4.9540 41 1 0.2264 -7.6945 -6.3202 42 1 0.2248 -8.6961 -4.8488 43 1 2.3040 -9.7866 -5.5356 44 1 2.4388 -8.7113 -6.9476 45 1 -0.7087 -11.6393 -6.9566 46 1 -0.7047 -10.4327 -5.6482 47 1 1.6677 -12.0021 -5.5218 48 1 2.6340 -14.2846 -3.2892 49 1 -0.6006 -10.0225 -8.7914 50 1 0.6979 -8.7128 -8.7928 51 1 2.4959 -10.4946 -8.6223 52 1 1.1982 -11.8049 -8.6207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165299499.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:49 Heat of formation + Delta-G solvation = -52.400578 kcal Electronic energy + Delta-G solvation = -28159.766847 eV Core-core repulsion = 24159.562469 eV Total energy + Delta-G solvation = -4000.204378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.25080 -40.75054 -39.53361 -37.78469 -36.27074 -36.00081 -35.73732 -32.79793 -32.51379 -30.86891 -29.42476 -27.79480 -26.38446 -24.66552 -24.57794 -23.48286 -22.92569 -22.01539 -21.68381 -20.89790 -19.92436 -19.02965 -18.34832 -17.85997 -17.19549 -16.99651 -16.77880 -16.54985 -16.42287 -16.21248 -15.86028 -15.59184 -15.17910 -15.05196 -14.82904 -14.51461 -14.44396 -14.07264 -13.96813 -13.82435 -13.57780 -13.17057 -13.14671 -13.06771 -12.92119 -12.81112 -12.57348 -12.42983 -12.37550 -12.28611 -12.18750 -11.94857 -11.86171 -11.20068 -11.13316 -11.06506 -11.01588 -10.88630 -10.61279 -10.53674 -10.17658 -10.07318 -8.98120 -7.96304 -5.23293 1.44840 1.45672 1.49197 1.54249 1.60879 1.85951 2.43378 2.53103 2.86326 2.91384 3.36370 3.55987 3.68989 3.81904 3.82267 3.86957 3.92923 3.96163 4.02176 4.04389 4.09761 4.20865 4.25300 4.45233 4.48344 4.49241 4.51331 4.64318 4.79862 4.81814 4.84297 4.90920 4.91396 4.95044 4.96511 4.98564 5.05433 5.09000 5.17410 5.19544 5.27795 5.34158 5.36248 5.36918 5.45689 5.47921 5.54789 6.26511 6.52191 6.58448 7.24270 7.28900 7.33776 8.09770 8.36282 9.26720 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011674 B = 0.001844 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.826696 B =15176.687192 C =16800.206771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.129 4.129 3 H 0.138 0.862 4 C -0.142 4.142 5 C -0.192 4.192 6 H 0.159 0.841 7 C 0.529 3.471 8 O -0.580 6.580 9 N -0.712 5.712 10 C 0.140 3.860 11 C -0.135 4.135 12 C 0.507 3.493 13 O -0.593 6.593 14 N -0.714 5.714 15 C 0.132 3.868 16 C -0.072 4.072 17 C -0.143 4.143 18 C 0.186 3.814 19 N -0.733 5.733 20 C -0.246 4.246 21 H 0.067 0.933 22 C -0.071 4.071 23 N -0.963 5.963 24 Si 0.968 3.032 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.276 1.276 28 C -0.150 4.150 29 C -0.163 4.163 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.134 0.866 35 H 0.421 0.579 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.418 0.582 41 H 0.066 0.934 42 H 0.033 0.967 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.010 0.990 46 H 0.015 0.985 47 H 0.377 0.623 48 H 0.252 0.748 49 H 0.093 0.907 50 H 0.118 0.882 51 H 0.111 0.889 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.883 27.908 -0.265 29.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.147 4.147 3 H 0.155 0.845 4 C -0.179 4.179 5 C -0.213 4.213 6 H 0.176 0.824 7 C 0.317 3.683 8 O -0.459 6.459 9 N -0.365 5.365 10 C 0.015 3.985 11 C -0.175 4.175 12 C 0.294 3.706 13 O -0.474 6.474 14 N -0.366 5.366 15 C 0.008 3.992 16 C -0.110 4.110 17 C -0.144 4.144 18 C 0.060 3.940 19 N -0.376 5.376 20 C -0.378 4.378 21 H 0.085 0.915 22 C -0.263 4.263 23 N -0.614 5.614 24 Si 0.798 3.202 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.201 1.201 28 C -0.188 4.188 29 C -0.200 4.200 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.152 0.848 35 H 0.259 0.741 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.148 0.852 39 H 0.159 0.841 40 H 0.256 0.744 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.028 0.972 46 H 0.033 0.967 47 H 0.210 0.790 48 H 0.060 0.940 49 H 0.111 0.889 50 H 0.136 0.864 51 H 0.129 0.871 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.018 27.929 -0.116 29.058 hybrid contribution 0.172 -1.481 0.627 1.618 sum 8.189 26.448 0.511 27.692 Atomic orbital electron populations 1.21285 0.93562 1.00776 1.01185 1.22505 0.95189 0.95035 1.01965 0.84470 1.23180 1.03831 1.00751 0.90124 1.22383 1.02569 1.00053 0.96282 0.82386 1.20413 0.88042 0.81799 0.78049 1.90734 1.16955 1.75777 1.62467 1.45767 1.11245 1.26694 1.52793 1.20761 0.92900 0.89108 0.95709 1.21747 0.98365 0.95081 1.02260 1.21100 0.88605 0.82506 0.78350 1.90747 1.17413 1.76380 1.62815 1.45889 1.11329 1.26731 1.52641 1.21102 0.93569 0.89038 0.95507 1.21066 0.96630 0.94577 0.98714 1.21445 1.02204 1.01125 0.89615 1.20246 0.92472 0.89875 0.91423 1.42393 1.06102 1.45267 1.43847 1.19579 0.91792 1.14137 1.12304 0.91485 1.25463 0.96273 1.02172 1.02436 1.69792 1.05268 1.42293 1.44026 0.85220 0.77449 0.78998 0.78580 1.21322 1.21831 1.20128 1.23090 0.99145 0.99742 0.96803 1.22994 0.99166 0.98155 0.99693 0.94281 0.91775 0.93607 0.90007 0.84756 0.74136 0.92932 0.93873 0.85228 0.84057 0.74439 0.91550 0.94887 0.92335 0.88335 0.97177 0.96689 0.79015 0.93958 0.88898 0.86414 0.87055 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 8.43 71.98 0.61 -1.44 16 2 C -0.13 -1.57 6.41 -10.77 -0.07 -1.64 16 3 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.14 -1.42 9.88 30.62 0.30 -1.12 16 5 C -0.19 -2.16 6.19 -11.54 -0.07 -2.23 16 6 H 0.16 0.65 8.14 -2.38 -0.02 0.63 16 7 C 0.53 10.30 7.59 87.66 0.67 10.97 16 8 O -0.58 -17.17 13.10 -3.02 -0.04 -17.21 16 9 N -0.71 -10.04 5.56 -463.05 -2.57 -12.61 16 10 C 0.14 2.81 4.96 86.38 0.43 3.24 16 11 C -0.13 -1.76 5.81 29.85 0.17 -1.58 16 12 C 0.51 12.28 7.83 87.66 0.69 12.97 16 13 O -0.59 -21.23 15.98 -3.04 -0.05 -21.28 16 14 N -0.71 -15.32 5.56 -463.08 -2.57 -17.89 16 15 C 0.13 3.72 5.40 86.38 0.47 4.18 16 16 C -0.07 -1.91 5.13 30.59 0.16 -1.75 16 17 C -0.14 -4.36 1.54 -52.18 -0.08 -4.44 16 18 C 0.19 7.70 5.93 86.38 0.51 8.22 16 19 N -0.73 -37.49 5.45 -343.46 -1.87 -39.36 16 20 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 21 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 22 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 23 N -0.96 -58.45 13.06 21.65 0.28 -58.16 16 24 Si 0.97 47.03 29.55 68.60 2.03 49.06 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 27 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 28 C -0.15 -3.55 9.95 30.62 0.30 -3.25 16 29 C -0.16 -4.37 9.94 30.62 0.30 -4.07 16 30 H 0.04 0.90 7.02 -2.39 -0.02 0.88 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.04 1.03 7.26 -2.39 -0.02 1.02 16 33 H 0.08 1.15 8.05 -2.39 -0.02 1.13 16 34 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.42 2.25 8.47 -92.71 -0.79 1.46 16 36 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 37 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 38 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.14 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.42 5.75 8.47 -92.71 -0.79 4.97 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.03 1.22 7.24 -2.39 -0.02 1.20 16 43 H 0.06 1.87 7.72 -2.39 -0.02 1.85 16 44 H 0.10 1.88 8.09 -2.39 -0.02 1.86 16 45 H 0.01 0.44 8.09 -2.39 -0.02 0.42 16 46 H 0.02 0.66 7.11 -2.39 -0.02 0.64 16 47 H 0.38 20.10 7.32 -92.71 -0.68 19.42 16 48 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 49 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 51 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 52 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -83.62 426.80 -0.42 -84.04 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -1.32 Total: 32.26 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.69 Total: 1.15 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -6.73 Total: -128.03 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.09 Total: -38.48 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -83.62 -0.42 -84.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165299499.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.639 kcal (2) G-P(sol) polarization free energy of solvation -83.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds