Wall clock time and date at job start Tue Mar 31 2020 22:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 115.55177 * 2 1 4 4 C 1.53079 * 117.53140 * 214.28655 * 2 1 3 5 5 C 1.52996 * 117.49729 * 145.66950 * 2 1 3 6 6 H 1.08999 * 117.50214 * 0.02562 * 5 2 1 7 7 C 1.52998 * 117.50137 * 215.02527 * 5 2 1 8 8 C 1.50697 * 109.47404 * 175.08856 * 7 5 2 9 9 O 1.21274 * 120.00097 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99798 * 179.97438 * 8 7 5 11 11 C 1.46496 * 119.99858 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47464 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47612 * 175.39739 * 12 11 10 14 14 C 1.52998 * 115.54564 * 279.48659 * 13 12 11 15 15 N 1.46900 * 109.47554 * 296.01707 * 14 13 12 16 16 C 1.46894 * 111.00127 * 185.24536 * 15 14 13 17 17 C 1.50707 * 109.46890 * 180.02562 * 16 15 14 18 18 O 1.21289 * 119.99821 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99783 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99795 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00139 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00178 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00108 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99875 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47272 * 89.99597 * 24 22 20 26 26 H 1.48496 * 109.47525 * 210.00302 * 24 22 20 27 27 H 1.48503 * 109.47159 * 330.00056 * 24 22 20 28 28 C 1.52995 * 117.49882 * 133.77911 * 13 12 11 29 29 C 1.52996 * 117.49621 * 65.15175 * 13 12 11 30 30 H 1.08998 * 109.47181 * 274.33278 * 1 2 3 31 31 H 1.09005 * 109.47369 * 34.32993 * 1 2 3 32 32 H 1.09007 * 109.47195 * 154.32644 * 1 2 3 33 33 H 1.08994 * 117.49165 * 145.04662 * 4 2 1 34 34 H 1.08997 * 117.51432 * 0.02562 * 4 2 1 35 35 H 1.09005 * 109.47144 * 295.08899 * 7 5 2 36 36 H 1.08998 * 109.46962 * 55.08437 * 7 5 2 37 37 H 0.96996 * 120.00084 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.48036 * 300.00620 * 11 10 8 39 39 H 1.09007 * 109.47150 * 60.00448 * 11 10 8 40 40 H 1.09000 * 109.47046 * 295.40126 * 12 11 10 41 41 H 1.09003 * 109.47045 * 55.39755 * 12 11 10 42 42 H 1.08994 * 109.47553 * 56.02454 * 14 13 12 43 43 H 1.09006 * 109.46881 * 176.02063 * 14 13 12 44 44 H 1.00903 * 110.99540 * 61.28884 * 15 14 13 45 45 H 1.08997 * 109.47670 * 299.99939 * 16 15 14 46 46 H 1.09002 * 109.47023 * 60.00953 * 16 15 14 47 47 H 0.96998 * 120.00247 * 359.97438 * 19 17 16 48 48 H 0.96994 * 119.99881 * 180.02562 * 23 22 20 49 49 H 1.08999 * 117.50161 * 359.97438 * 28 13 12 50 50 H 1.08994 * 117.49924 * 145.02262 * 28 13 12 51 51 H 1.08994 * 117.49868 * 214.97885 * 29 13 12 52 52 H 1.08998 * 117.50187 * 359.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2376 -1.1216 -0.7647 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8583 1.2686 7 6 3.5484 -0.7752 1.4726 8 6 4.0221 -1.9676 2.2630 9 8 3.3745 -2.9930 2.2605 10 7 5.1661 -1.8949 2.9718 11 6 5.6264 -3.0538 3.7406 12 6 6.9385 -2.7084 4.4478 13 6 7.3597 -3.8771 5.3409 14 6 6.6563 -3.9579 6.6972 15 7 7.0039 -2.7779 7.5002 16 6 6.4468 -2.8807 8.8555 17 6 6.8228 -1.6549 9.6475 18 8 7.4889 -0.7814 9.1332 19 7 6.4189 -1.5293 10.9272 20 6 6.7605 -0.4139 11.6474 21 1 7.3529 0.3643 11.1893 22 6 6.3437 -0.2841 12.9666 23 7 6.6707 0.7853 13.6568 24 14 5.3173 -1.6290 13.7584 25 1 6.2143 -2.6233 14.4003 26 1 4.4253 -1.0318 14.7845 27 1 4.4961 -2.3014 12.7196 28 6 8.8207 -4.3262 5.2744 29 6 7.7242 -5.1950 4.6545 30 1 -0.3633 0.0776 1.0247 31 1 -0.3634 0.8487 -0.5796 32 1 -0.3634 -0.9263 -0.4453 33 1 3.1729 -0.8755 -1.2673 34 1 1.6131 -1.8594 -1.2683 35 1 4.3015 -0.5083 0.7312 36 1 3.3873 0.0665 2.1462 37 1 5.6843 -1.0749 2.9735 38 1 4.8735 -3.3202 4.4824 39 1 5.7870 -3.8960 3.0674 40 1 7.7135 -2.5214 3.7045 41 1 6.7981 -1.8166 5.0586 42 1 5.5774 -3.9893 6.5458 43 1 6.9763 -4.8597 7.2193 44 1 6.6987 -1.9296 7.0471 45 1 5.3610 -2.9563 8.7974 46 1 6.8471 -3.7677 9.3466 47 1 5.8859 -2.2277 11.3383 48 1 6.3800 0.8757 14.5777 49 1 9.4818 -3.7894 4.5940 50 1 9.2812 -4.6793 6.1970 51 1 7.4635 -6.1196 5.1695 52 1 7.6636 -5.2296 3.5668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167012646.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:16 Heat of formation + Delta-G solvation = -35.104927 kcal Electronic energy + Delta-G solvation = -28159.285529 eV Core-core repulsion = 24159.831147 eV Total energy + Delta-G solvation = -3999.454382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.15490 -39.04281 -38.27936 -37.90554 -35.16958 -34.70026 -33.79085 -31.66271 -31.48414 -29.94462 -28.23618 -27.70875 -25.16460 -23.90170 -23.22067 -22.35107 -21.77455 -20.89928 -20.40099 -19.47893 -18.97783 -18.27446 -17.22673 -16.48796 -16.42054 -15.92206 -15.71189 -15.39897 -15.17318 -14.85581 -14.66688 -14.59854 -14.14217 -13.86514 -13.64983 -13.51847 -13.31738 -13.16526 -12.84660 -12.76943 -12.55447 -12.41857 -12.24740 -11.95085 -11.80356 -11.75462 -11.72119 -11.68135 -11.49798 -11.16501 -11.10455 -10.60030 -10.37393 -10.34400 -10.24485 -10.00908 -9.97422 -9.82438 -9.57580 -9.31865 -8.58599 -8.19271 -8.10684 -6.31622 -3.82976 2.41235 2.85325 3.02331 3.06770 3.14812 3.40267 3.55266 3.74168 4.09592 4.20028 4.23089 4.35843 4.45825 4.53988 4.60586 4.70154 4.73672 4.81481 4.91295 4.94926 5.02580 5.07941 5.13839 5.17179 5.22559 5.28859 5.37411 5.41173 5.43346 5.48953 5.50813 5.53785 5.57408 5.66647 5.67013 5.80614 5.84186 5.85418 5.87081 5.92383 5.94445 6.00971 6.05002 6.10437 6.20384 7.10011 7.22558 7.57069 7.58871 7.98057 8.14009 8.59479 8.94504 9.42111 9.82450 10.81503 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.001989 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.967867 B =14076.332835 C =16110.239203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.154 4.154 3 H 0.104 0.896 4 C -0.174 4.174 5 C -0.137 4.137 6 H 0.118 0.882 7 C -0.112 4.112 8 C 0.514 3.486 9 O -0.539 6.539 10 N -0.733 5.733 11 C 0.122 3.878 12 C -0.095 4.095 13 C -0.115 4.115 14 C 0.095 3.905 15 N -0.663 5.663 16 C 0.047 3.953 17 C 0.451 3.549 18 O -0.565 6.565 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.153 4.153 29 C -0.176 4.176 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.402 0.598 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.031 0.969 43 H 0.073 0.927 44 H 0.349 0.651 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.094 0.906 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 -8.169 -26.305 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.172 4.172 3 H 0.122 0.878 4 C -0.211 4.211 5 C -0.155 4.155 6 H 0.136 0.864 7 C -0.152 4.152 8 C 0.301 3.699 9 O -0.416 6.416 10 N -0.385 5.385 11 C -0.002 4.002 12 C -0.132 4.132 13 C -0.116 4.116 14 C -0.035 4.035 15 N -0.296 5.296 16 C -0.086 4.086 17 C 0.236 3.764 18 O -0.446 6.446 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.190 4.190 29 C -0.214 4.214 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.236 0.764 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.169 0.831 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.110 0.890 50 H 0.117 0.883 51 H 0.112 0.888 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.831 -8.435 -26.250 28.181 hybrid contribution -1.420 -0.422 0.755 1.663 sum -7.251 -8.857 -25.494 27.946 Atomic orbital electron populations 1.21364 0.92721 1.01936 1.02038 1.22448 0.95483 0.94496 1.04821 0.87804 1.23221 1.02527 1.01311 0.94071 1.22160 0.97662 1.01942 0.93779 0.86401 1.21234 0.97281 0.96912 0.99727 1.20597 0.80357 0.89769 0.79212 1.90695 1.55500 1.32063 1.63364 1.46071 1.25245 1.17028 1.50148 1.21354 0.95895 0.88164 0.94750 1.21302 0.96025 0.97932 0.97978 1.21184 0.99053 0.95349 0.96042 1.21451 0.96480 0.94484 0.91047 1.60008 1.63584 1.04499 1.01528 1.21711 0.97292 0.98798 0.90754 1.19708 0.85136 0.88757 0.82780 1.90558 1.41443 1.42832 1.69811 1.42211 1.48980 1.20493 1.11364 1.19428 1.32132 0.97706 0.94085 0.86289 1.25041 0.97927 0.97023 0.96206 1.69620 1.45385 1.26884 1.10258 0.86668 0.80666 0.82024 0.80002 1.19592 1.20190 1.19543 1.22955 0.90789 1.02553 1.02692 1.23041 1.04227 0.94246 0.99854 0.92061 0.92148 0.92513 0.88934 0.88758 0.88792 0.88304 0.76430 0.91486 0.91473 0.91010 0.90210 0.95060 0.90859 0.83146 0.93872 0.89497 0.79695 0.91620 0.88972 0.88338 0.88795 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.76 10.19 37.16 0.38 -0.38 16 2 C -0.15 -1.02 6.13 -90.58 -0.56 -1.58 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.17 -1.21 9.83 -26.69 -0.26 -1.47 16 5 C -0.14 -1.11 5.13 -90.62 -0.46 -1.57 16 6 H 0.12 1.21 7.31 -51.93 -0.38 0.83 16 7 C -0.11 -0.78 5.98 -27.89 -0.17 -0.94 16 8 C 0.51 5.17 7.83 -10.99 -0.09 5.09 16 9 O -0.54 -7.65 15.56 5.56 0.09 -7.56 16 10 N -0.73 -6.08 5.56 -60.30 -0.33 -6.42 16 11 C 0.12 1.13 5.51 -4.04 -0.02 1.11 16 12 C -0.09 -0.83 5.24 -26.73 -0.14 -0.97 16 13 C -0.12 -1.13 1.73 -154.51 -0.27 -1.40 16 14 C 0.09 1.09 5.55 -3.83 -0.02 1.07 16 15 N -0.66 -9.98 6.09 -115.06 -0.70 -10.68 16 16 C 0.05 0.78 6.16 -4.98 -0.03 0.75 16 17 C 0.45 10.18 7.82 -10.98 -0.09 10.10 16 18 O -0.56 -15.03 15.78 5.55 0.09 -14.94 16 19 N -0.59 -14.08 5.09 -10.96 -0.06 -14.14 16 20 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 23 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 24 Si 0.88 19.41 27.74 -169.99 -4.71 14.70 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 28 C -0.15 -1.48 9.90 -26.73 -0.26 -1.75 16 29 C -0.18 -1.50 9.58 -26.73 -0.26 -1.75 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.35 7.90 -51.92 -0.41 -0.06 16 33 H 0.09 0.55 8.03 -51.93 -0.42 0.14 16 34 H 0.09 0.65 8.05 -51.93 -0.42 0.23 16 35 H 0.09 0.48 7.88 -51.93 -0.41 0.07 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 2.32 8.47 -40.82 -0.35 1.98 16 38 H 0.07 0.73 7.69 -51.93 -0.40 0.33 16 39 H 0.07 0.66 7.82 -51.92 -0.41 0.25 16 40 H 0.07 0.56 7.94 -51.93 -0.41 0.15 16 41 H 0.08 0.78 6.73 -51.93 -0.35 0.43 16 42 H 0.03 0.35 7.69 -51.93 -0.40 -0.05 16 43 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 44 H 0.35 5.42 7.06 -39.29 -0.28 5.15 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.37 7.76 5.76 -40.82 -0.24 7.53 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 50 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.09 0.72 7.99 -51.93 -0.41 0.30 16 LS Contribution 426.06 15.07 6.42 6.42 Total: -1.00 -34.56 426.06 -9.98 -44.54 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: -9.05 Total: 14.52 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.46 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.32 Total: -56.21 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.17 Total: -22.50 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -34.56 -9.98 -44.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167012646.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.435 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds