Wall clock time and date at job start Tue Mar 31 2020 22:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 115.55177 * 2 1 4 4 C 1.53079 * 117.53140 * 214.28655 * 2 1 3 5 5 C 1.52996 * 117.49729 * 145.66950 * 2 1 3 6 6 H 1.08999 * 117.50214 * 0.02562 * 5 2 1 7 7 C 1.52998 * 117.50137 * 215.02527 * 5 2 1 8 8 C 1.50697 * 109.47404 * 175.08856 * 7 5 2 9 9 O 1.21274 * 120.00097 * 0.02562 * 8 7 5 10 10 N 1.34777 * 119.99798 * 179.97438 * 8 7 5 11 11 C 1.46496 * 119.99858 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47464 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47612 * 175.39739 * 12 11 10 14 14 C 1.52998 * 115.54564 * 279.48659 * 13 12 11 15 15 N 1.46900 * 109.47554 * 296.01707 * 14 13 12 16 16 C 1.46894 * 111.00127 * 185.24536 * 15 14 13 17 17 C 1.50707 * 109.46890 * 180.02562 * 16 15 14 18 18 O 1.21289 * 119.99821 * 0.02562 * 17 16 15 19 19 N 1.34778 * 119.99783 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99795 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00139 * 0.02562 * 20 19 17 22 22 C 1.38951 * 120.00178 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00108 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99875 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47272 * 89.99597 * 24 22 20 26 26 H 1.48496 * 109.47525 * 210.00302 * 24 22 20 27 27 H 1.48503 * 109.47159 * 330.00056 * 24 22 20 28 28 C 1.52995 * 117.49882 * 133.77911 * 13 12 11 29 29 C 1.52996 * 117.49621 * 65.15175 * 13 12 11 30 30 H 1.08998 * 109.47181 * 274.33278 * 1 2 3 31 31 H 1.09005 * 109.47369 * 34.32993 * 1 2 3 32 32 H 1.09007 * 109.47195 * 154.32644 * 1 2 3 33 33 H 1.08994 * 117.49165 * 145.04662 * 4 2 1 34 34 H 1.08997 * 117.51432 * 0.02562 * 4 2 1 35 35 H 1.09005 * 109.47144 * 295.08899 * 7 5 2 36 36 H 1.08998 * 109.46962 * 55.08437 * 7 5 2 37 37 H 0.96996 * 120.00084 * 0.02562 * 10 8 7 38 38 H 1.09001 * 109.48036 * 300.00620 * 11 10 8 39 39 H 1.09007 * 109.47150 * 60.00448 * 11 10 8 40 40 H 1.09000 * 109.47046 * 295.40126 * 12 11 10 41 41 H 1.09003 * 109.47045 * 55.39755 * 12 11 10 42 42 H 1.08994 * 109.47553 * 56.02454 * 14 13 12 43 43 H 1.09006 * 109.46881 * 176.02063 * 14 13 12 44 44 H 1.00903 * 110.99540 * 61.28884 * 15 14 13 45 45 H 1.08997 * 109.47670 * 299.99939 * 16 15 14 46 46 H 1.09002 * 109.47023 * 60.00953 * 16 15 14 47 47 H 0.96998 * 120.00247 * 359.97438 * 19 17 16 48 48 H 0.96994 * 119.99881 * 180.02562 * 23 22 20 49 49 H 1.08999 * 117.50161 * 359.97438 * 28 13 12 50 50 H 1.08994 * 117.49924 * 145.02262 * 28 13 12 51 51 H 1.08994 * 117.49868 * 214.97885 * 29 13 12 52 52 H 1.08998 * 117.50187 * 359.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9833 0.0000 4 6 2.2376 -1.1216 -0.7647 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8583 1.2686 7 6 3.5484 -0.7752 1.4726 8 6 4.0221 -1.9676 2.2630 9 8 3.3745 -2.9930 2.2605 10 7 5.1661 -1.8949 2.9718 11 6 5.6264 -3.0538 3.7406 12 6 6.9385 -2.7084 4.4478 13 6 7.3597 -3.8771 5.3409 14 6 6.6563 -3.9579 6.6972 15 7 7.0039 -2.7779 7.5002 16 6 6.4468 -2.8807 8.8555 17 6 6.8228 -1.6549 9.6475 18 8 7.4889 -0.7814 9.1332 19 7 6.4189 -1.5293 10.9272 20 6 6.7605 -0.4139 11.6474 21 1 7.3529 0.3643 11.1893 22 6 6.3437 -0.2841 12.9666 23 7 6.6707 0.7853 13.6568 24 14 5.3173 -1.6290 13.7584 25 1 6.2143 -2.6233 14.4003 26 1 4.4253 -1.0318 14.7845 27 1 4.4961 -2.3014 12.7196 28 6 8.8207 -4.3262 5.2744 29 6 7.7242 -5.1950 4.6545 30 1 -0.3633 0.0776 1.0247 31 1 -0.3634 0.8487 -0.5796 32 1 -0.3634 -0.9263 -0.4453 33 1 3.1729 -0.8755 -1.2673 34 1 1.6131 -1.8594 -1.2683 35 1 4.3015 -0.5083 0.7312 36 1 3.3873 0.0665 2.1462 37 1 5.6843 -1.0749 2.9735 38 1 4.8735 -3.3202 4.4824 39 1 5.7870 -3.8960 3.0674 40 1 7.7135 -2.5214 3.7045 41 1 6.7981 -1.8166 5.0586 42 1 5.5774 -3.9893 6.5458 43 1 6.9763 -4.8597 7.2193 44 1 6.6987 -1.9296 7.0471 45 1 5.3610 -2.9563 8.7974 46 1 6.8471 -3.7677 9.3466 47 1 5.8859 -2.2277 11.3383 48 1 6.3800 0.8757 14.5777 49 1 9.4818 -3.7894 4.5940 50 1 9.2812 -4.6793 6.1970 51 1 7.4635 -6.1196 5.1695 52 1 7.6636 -5.2296 3.5668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167012646.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:13 Heat of formation + Delta-G solvation = -60.187683 kcal Electronic energy + Delta-G solvation = -28160.373199 eV Core-core repulsion = 24159.831147 eV Total energy + Delta-G solvation = -4000.542052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.92482 -40.36425 -39.55417 -38.53278 -36.31936 -35.90157 -35.46193 -33.74192 -32.15524 -30.60052 -29.50866 -28.32392 -26.79798 -24.67786 -24.58526 -23.07731 -22.41267 -21.53377 -21.31370 -21.01429 -20.38038 -19.67732 -18.02729 -17.71085 -17.26804 -17.20294 -16.73850 -16.64698 -16.18146 -15.93216 -15.75158 -15.36289 -15.17961 -15.17403 -14.84606 -14.57544 -14.42088 -14.27495 -14.01716 -13.88821 -13.41361 -13.33097 -13.22406 -13.07732 -13.01757 -12.81547 -12.52105 -12.41718 -12.33602 -12.24167 -12.21104 -11.99540 -11.90784 -11.51984 -11.14214 -10.99686 -10.87951 -10.68757 -10.53226 -10.42568 -10.25049 -10.09210 -9.28239 -8.41778 -6.02443 1.29745 1.34928 1.43632 1.65032 1.94980 2.17388 2.22261 2.60972 2.85734 2.98860 3.14524 3.50334 3.67017 3.74581 3.80423 3.82926 3.94291 3.99537 4.10270 4.14527 4.16322 4.32500 4.36500 4.43665 4.44362 4.52111 4.53299 4.56786 4.65958 4.69853 4.75673 4.79259 4.88703 4.91212 4.93810 4.96805 5.08331 5.12339 5.18227 5.19497 5.30490 5.31915 5.35999 5.44093 5.49826 5.52152 5.90226 6.04747 6.39330 6.55858 6.59344 6.87553 7.26322 7.39312 7.95496 8.75752 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009788 B = 0.001989 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.967867 B =14076.332835 C =16110.239203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 H 0.119 0.881 4 C -0.174 4.174 5 C -0.154 4.154 6 H 0.088 0.912 7 C -0.104 4.104 8 C 0.509 3.491 9 O -0.587 6.587 10 N -0.723 5.723 11 C 0.129 3.871 12 C -0.084 4.084 13 C -0.127 4.127 14 C 0.097 3.903 15 N -0.678 5.678 16 C 0.060 3.940 17 C 0.449 3.551 18 O -0.612 6.612 19 N -0.592 5.592 20 C -0.328 4.328 21 H 0.056 0.944 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.964 3.036 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.233 1.233 28 C -0.161 4.161 29 C -0.158 4.158 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.415 0.585 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.343 0.657 45 H 0.072 0.928 46 H 0.113 0.887 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.097 0.903 50 H 0.088 0.912 51 H 0.101 0.899 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 -10.157 -27.284 30.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.163 4.163 3 H 0.137 0.863 4 C -0.211 4.211 5 C -0.173 4.173 6 H 0.107 0.893 7 C -0.143 4.143 8 C 0.297 3.703 9 O -0.467 6.467 10 N -0.376 5.376 11 C 0.005 3.995 12 C -0.122 4.122 13 C -0.128 4.128 14 C -0.031 4.031 15 N -0.310 5.310 16 C -0.072 4.072 17 C 0.237 3.763 18 O -0.496 6.496 19 N -0.233 5.233 20 C -0.457 4.457 21 H 0.075 0.925 22 C -0.214 4.214 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.156 1.156 28 C -0.198 4.198 29 C -0.196 4.196 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.252 0.748 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.162 0.838 45 H 0.090 0.910 46 H 0.131 0.869 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.116 0.884 50 H 0.106 0.894 51 H 0.119 0.881 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.811 -10.425 -27.251 29.961 hybrid contribution -1.024 0.266 0.981 1.443 sum -7.835 -10.159 -26.270 29.235 Atomic orbital electron populations 1.21402 0.92696 1.02291 1.01981 1.22544 0.95607 0.94743 1.03449 0.86285 1.23299 1.03163 1.01369 0.93278 1.22089 0.98259 1.02482 0.94486 0.89337 1.21257 0.97208 0.95740 1.00089 1.21183 0.80102 0.90001 0.79007 1.90674 1.56931 1.34036 1.65105 1.46024 1.24907 1.17386 1.49244 1.21217 0.95551 0.88466 0.94293 1.21199 0.96006 0.97137 0.97860 1.21199 0.99150 0.96696 0.95727 1.21501 0.97106 0.93106 0.91393 1.60029 1.64077 1.05575 1.01359 1.21634 0.99104 0.95770 0.90690 1.20952 0.83056 0.89859 0.82410 1.90536 1.43138 1.45153 1.70765 1.42044 1.49757 1.19770 1.11773 1.19011 1.33042 0.98422 0.95252 0.92544 1.26104 0.98967 1.00164 0.96154 1.69800 1.46904 1.29730 1.10979 0.85374 0.78776 0.78116 0.79318 1.18155 1.20019 1.15625 1.22971 0.90858 1.03287 1.02659 1.23082 1.02387 0.93687 1.00425 0.92480 0.90911 0.92927 0.87550 0.89238 0.86255 0.86709 0.74808 0.93258 0.91794 0.89696 0.91243 0.94398 0.90078 0.83803 0.91040 0.86889 0.77538 0.91150 0.88418 0.89385 0.88100 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 10.19 71.98 0.73 -0.73 16 2 C -0.15 -1.72 6.13 -10.77 -0.07 -1.79 16 3 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.17 -2.23 9.83 30.62 0.30 -1.92 16 5 C -0.15 -2.43 5.13 -10.79 -0.06 -2.48 16 6 H 0.09 1.93 7.31 -2.39 -0.02 1.91 16 7 C -0.10 -1.28 5.98 29.85 0.18 -1.11 16 8 C 0.51 9.92 7.83 87.66 0.69 10.61 16 9 O -0.59 -16.93 15.56 -3.01 -0.05 -16.98 16 10 N -0.72 -11.16 5.56 -463.07 -2.57 -13.73 16 11 C 0.13 2.25 5.51 86.38 0.48 2.73 16 12 C -0.08 -1.36 5.24 30.60 0.16 -1.20 16 13 C -0.13 -2.27 1.73 -52.18 -0.09 -2.36 16 14 C 0.10 2.04 5.55 86.30 0.48 2.51 16 15 N -0.68 -19.37 6.09 -517.94 -3.16 -22.52 16 16 C 0.06 1.84 6.16 85.56 0.53 2.37 16 17 C 0.45 20.21 7.82 87.66 0.69 20.89 16 18 O -0.61 -33.60 15.78 -3.06 -0.05 -33.65 16 19 N -0.59 -27.92 5.09 -306.98 -1.56 -29.49 16 20 C -0.33 -19.23 10.16 84.04 0.85 -18.38 16 21 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 23 N -0.93 -56.27 13.96 21.66 0.30 -55.97 16 24 Si 0.96 38.90 27.74 68.60 1.90 40.80 16 25 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 26 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 27 H -0.23 -7.94 6.52 99.48 0.65 -7.29 16 28 C -0.16 -2.85 9.90 30.60 0.30 -2.54 16 29 C -0.16 -2.32 9.58 30.60 0.29 -2.03 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.05 0.64 7.90 -2.38 -0.02 0.62 16 33 H 0.11 1.05 8.03 -2.39 -0.02 1.03 16 34 H 0.09 1.20 8.05 -2.39 -0.02 1.18 16 35 H 0.12 0.88 7.88 -2.38 -0.02 0.86 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.42 4.08 8.47 -92.71 -0.79 3.30 16 38 H 0.05 1.05 7.69 -2.39 -0.02 1.03 16 39 H 0.06 1.18 7.82 -2.38 -0.02 1.16 16 40 H 0.08 1.16 7.94 -2.39 -0.02 1.14 16 41 H 0.07 1.29 6.73 -2.39 -0.02 1.27 16 42 H 0.04 0.76 7.69 -2.39 -0.02 0.74 16 43 H 0.08 1.57 8.09 -2.38 -0.02 1.55 16 44 H 0.34 10.45 7.06 -89.69 -0.63 9.81 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 47 H 0.39 15.24 5.76 -92.71 -0.53 14.71 16 48 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 49 H 0.10 1.60 8.08 -2.39 -0.02 1.58 16 50 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.10 1.33 7.99 -2.39 -0.02 1.31 16 Total: -1.00 -80.88 426.06 -0.33 -81.21 By element: Atomic # 1 Polarization: 47.22 SS G_CDS: -1.08 Total: 46.14 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 5.93 Total: 4.19 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -6.99 Total: -121.71 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.10 Total: -50.62 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 1.90 Total: 40.80 kcal Total: -80.88 -0.33 -81.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167012646.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.019 kcal (2) G-P(sol) polarization free energy of solvation -80.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds