Wall clock time and date at job start Tue Mar 31 2020 21:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.52721 * 2 1 4 4 C 1.53043 * 109.49408 * 239.92189 * 2 1 3 5 5 C 1.53042 * 109.53333 * 178.68461 * 4 2 1 6 6 C 1.53185 * 109.31575 * 61.36297 * 5 4 2 7 7 N 1.46923 * 108.77816 * 305.36636 * 6 5 4 8 8 C 1.34775 * 120.63209 * 233.63143 * 7 6 5 9 9 O 1.21344 * 120.00234 * 173.64809 * 8 7 6 10 10 C 1.49456 * 119.99798 * 353.64716 * 8 7 6 11 11 O 1.21347 * 120.00063 * 352.95582 * 10 8 7 12 12 N 1.34769 * 119.99714 * 172.96043 * 10 8 7 13 13 C 1.46503 * 119.99940 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47256 * 179.97438 * 13 12 10 15 15 C 1.53005 * 109.46957 * 183.73639 * 14 13 12 16 16 C 1.53009 * 115.54677 * 275.70926 * 15 14 13 17 17 N 1.46497 * 109.46891 * 294.16896 * 16 15 14 18 18 C 1.36937 * 119.99839 * 179.32723 * 17 16 15 19 19 H 1.08005 * 120.00294 * 359.97438 * 18 17 16 20 20 C 1.38816 * 120.00182 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99875 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00112 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46945 * 60.00398 * 22 20 18 24 24 H 1.48503 * 109.47074 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47575 * 300.00753 * 22 20 18 26 26 C 1.52995 * 117.49983 * 130.00751 * 15 14 13 27 27 C 1.52990 * 117.50253 * 61.38060 * 15 14 13 28 28 C 1.46930 * 118.73760 * 53.60546 * 7 6 5 29 29 H 1.08994 * 109.46996 * 299.91880 * 1 2 3 30 30 H 1.08999 * 109.46830 * 59.91347 * 1 2 3 31 31 H 1.08998 * 109.46797 * 179.91385 * 1 2 3 32 32 H 1.09001 * 109.46168 * 58.66492 * 4 2 1 33 33 H 1.08997 * 109.46297 * 298.70154 * 4 2 1 34 34 H 1.09000 * 109.49715 * 301.41120 * 5 4 2 35 35 H 1.09008 * 109.49592 * 181.31810 * 5 4 2 36 36 H 1.09006 * 109.58496 * 65.15509 * 6 5 4 37 37 H 1.08998 * 109.59011 * 185.57212 * 6 5 4 38 38 H 0.97004 * 120.00222 * 359.97438 * 12 10 8 39 39 H 1.08997 * 109.47586 * 300.00123 * 13 12 10 40 40 H 1.09007 * 109.46766 * 59.99733 * 13 12 10 41 41 H 1.08999 * 109.47131 * 303.72924 * 14 13 12 42 42 H 1.09003 * 109.47093 * 63.73484 * 14 13 12 43 43 H 1.08999 * 109.46825 * 54.16409 * 16 15 14 44 44 H 1.09002 * 109.46922 * 174.16989 * 16 15 14 45 45 H 0.97004 * 120.00629 * 359.32872 * 17 16 15 46 46 H 0.97003 * 119.99929 * 179.97438 * 21 20 18 47 47 H 1.09001 * 117.49809 * 359.97438 * 26 15 14 48 48 H 1.08998 * 117.50315 * 145.01821 * 26 15 14 49 49 H 1.09001 * 117.49855 * 214.98340 * 27 15 14 50 50 H 1.09003 * 117.49952 * 359.97438 * 27 15 14 51 51 H 1.09000 * 109.58499 * 66.18203 * 28 7 6 52 52 H 1.09001 * 109.58387 * 186.46783 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6950 -1.2660 6 6 4.1053 -1.4267 -0.0309 7 7 3.5046 -0.8292 1.1695 8 6 4.2812 -0.3857 2.1778 9 8 3.7830 0.2090 3.1109 10 6 5.7559 -0.6263 2.1467 11 8 6.2379 -1.3289 1.2827 12 7 6.5503 -0.0631 3.0783 13 6 7.9958 -0.2994 3.0482 14 6 8.6592 0.4494 4.2059 15 6 10.1773 0.2789 4.1202 16 6 10.7342 -1.0005 4.7481 17 7 10.5177 -0.9678 6.1966 18 6 10.9238 -2.0198 6.9734 19 1 11.4034 -2.8738 6.5183 20 6 10.7191 -1.9887 8.3461 21 7 10.1342 -0.9482 8.9008 22 14 11.2726 -3.4240 9.4057 23 1 12.7398 -3.6057 9.2659 24 1 10.9408 -3.1472 10.8265 25 1 10.5767 -4.6604 8.9672 26 6 11.0362 1.5419 4.2095 27 6 10.8792 0.8165 2.8716 28 6 2.0413 -0.7239 1.2495 29 1 -0.3633 0.5125 0.8907 30 1 -0.3633 0.5152 -0.8892 31 1 -0.3633 -1.0277 -0.0015 32 1 1.6581 -0.2244 -2.1390 33 1 1.6967 -1.7572 -1.2354 34 1 3.9159 0.3389 -1.2541 35 1 3.9334 -1.1896 -2.1672 36 1 3.8376 -2.4818 -0.0869 37 1 5.1896 -1.3247 0.0136 38 1 6.1650 0.4988 3.7689 39 1 8.1916 -1.3671 3.1460 40 1 8.4030 0.0596 2.1029 41 1 8.4086 1.5084 4.1448 42 1 8.3011 0.0452 5.1528 43 1 10.2239 -1.8652 4.3238 44 1 11.8022 -1.0714 4.5418 45 1 10.0866 -0.2010 6.6054 46 1 9.9909 -0.9266 9.8599 47 1 10.5197 2.4943 4.3289 48 1 11.9982 1.4617 4.7157 49 1 11.7379 0.2589 2.4976 50 1 10.2595 1.2912 2.1109 51 1 1.6053 -1.7217 1.2979 52 1 1.7637 -0.1602 2.1402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167403273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:13 Heat of formation + Delta-G solvation = -34.754275 kcal Electronic energy + Delta-G solvation = -29354.017065 eV Core-core repulsion = 25354.577888 eV Total energy + Delta-G solvation = -3999.439176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.14212 -39.23472 -38.27600 -37.91898 -35.32490 -33.96267 -33.83158 -32.21131 -30.77753 -30.22161 -27.60737 -26.49012 -25.94770 -24.33801 -22.81641 -22.67384 -22.51552 -21.64066 -20.79299 -20.01549 -18.58284 -17.61984 -17.22140 -17.02760 -16.32778 -15.96356 -15.62174 -15.33593 -15.08389 -14.77166 -14.66922 -14.42394 -14.15597 -14.08319 -13.82340 -13.45478 -13.31326 -13.12680 -12.98365 -12.67729 -12.50697 -12.31861 -12.19415 -11.97222 -11.71589 -11.50720 -11.45038 -11.24396 -11.13822 -10.98119 -10.91405 -10.81243 -10.78127 -10.58905 -10.16301 -9.91227 -9.68714 -9.41078 -9.32681 -9.18067 -9.00925 -8.83461 -6.89061 -5.74413 -3.02534 1.26938 2.14573 3.03316 3.30989 3.45649 3.49976 3.50917 4.02273 4.14882 4.33105 4.38766 4.47850 4.62714 4.67877 4.93076 4.98182 5.03190 5.04566 5.11138 5.13412 5.19694 5.24278 5.31237 5.35028 5.42349 5.46671 5.56646 5.57738 5.61724 5.62277 5.68275 5.69935 5.75101 5.77005 5.89213 5.98361 6.03617 6.10706 6.17695 6.22460 6.35626 6.40939 6.45585 6.52464 6.74653 6.81582 6.83928 7.12399 7.58141 7.71412 7.85880 8.44659 9.56105 10.14381 10.49881 11.48295 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.002134 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.970440 B =13120.074795 C =14074.996863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.135 4.135 6 C 0.062 3.938 7 N -0.582 5.582 8 C 0.508 3.492 9 O -0.521 6.521 10 C 0.507 3.493 11 O -0.515 6.515 12 N -0.690 5.690 13 C 0.120 3.880 14 C -0.093 4.093 15 C -0.119 4.119 16 C 0.188 3.812 17 N -0.728 5.728 18 C -0.239 4.239 19 H 0.069 0.931 20 C -0.014 4.014 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.163 4.163 27 C -0.178 4.178 28 C 0.111 3.889 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.147 0.853 38 H 0.414 0.586 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.023 0.977 44 H 0.020 0.980 45 H 0.385 0.615 46 H 0.255 0.745 47 H 0.089 0.911 48 H 0.096 0.904 49 H 0.093 0.907 50 H 0.089 0.911 51 H 0.072 0.928 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.925 4.495 -22.537 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.173 4.173 6 C -0.059 4.059 7 N -0.316 5.316 8 C 0.291 3.709 9 O -0.397 6.397 10 C 0.288 3.712 11 O -0.393 6.393 12 N -0.342 5.342 13 C -0.002 4.002 14 C -0.131 4.131 15 C -0.120 4.120 16 C 0.060 3.940 17 N -0.372 5.372 18 C -0.370 4.370 19 H 0.087 0.913 20 C -0.210 4.210 21 N -0.582 5.582 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.200 4.200 27 C -0.215 4.215 28 C -0.011 4.011 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.164 0.836 38 H 0.250 0.750 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.041 0.959 44 H 0.037 0.963 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.107 0.893 48 H 0.115 0.885 49 H 0.111 0.889 50 H 0.107 0.893 51 H 0.090 0.910 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.756 4.151 -22.560 27.829 hybrid contribution -0.123 -0.333 1.075 1.132 sum -15.879 3.817 -21.485 26.987 Atomic orbital electron populations 1.21767 0.94176 1.02162 1.02199 1.21497 0.96080 1.00167 0.94791 0.90686 1.21635 0.95631 1.00812 0.97404 1.21949 0.95706 1.01447 0.98241 1.23015 1.04018 0.96586 0.82285 1.47939 1.06639 1.58982 1.17997 1.20159 0.87885 0.79851 0.83042 1.90764 1.74987 1.39665 1.34299 1.20043 0.87475 0.81070 0.82570 1.90441 1.75556 1.38115 1.35229 1.45919 1.08582 1.49440 1.30211 1.21599 0.76947 1.01953 0.99698 1.21287 0.93084 0.99855 0.98899 1.21550 0.92384 0.96915 1.01182 1.20183 0.96294 0.91629 0.85862 1.42290 1.72455 1.22135 1.00324 1.19179 1.31809 0.97000 0.89041 0.91319 1.24727 1.01638 0.97905 0.96711 1.69649 1.48306 1.29645 1.10556 0.86275 0.78284 0.81989 0.79681 1.21322 1.21719 1.21310 1.22972 1.01964 0.95385 0.99650 1.22988 1.03005 1.04444 0.91105 1.21821 0.78631 1.01253 0.99429 0.92263 0.92212 0.92386 0.91657 0.91664 0.91682 0.90427 0.91373 0.83646 0.75010 0.90262 0.90876 0.91599 0.89188 0.95897 0.96264 0.78125 0.93505 0.89281 0.88520 0.88881 0.89250 0.90980 0.88705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.20 37.16 0.34 -0.44 16 2 C -0.11 -0.73 2.87 -90.50 -0.26 -0.99 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.12 -0.72 5.17 -26.69 -0.14 -0.86 16 5 C -0.14 -0.95 6.08 -26.61 -0.16 -1.12 16 6 C 0.06 0.57 6.04 -3.72 -0.02 0.55 16 7 N -0.58 -6.16 2.97 -173.28 -0.52 -6.67 16 8 C 0.51 6.55 7.75 -11.58 -0.09 6.46 16 9 O -0.52 -7.75 15.92 5.50 0.09 -7.66 16 10 C 0.51 6.72 7.76 -11.59 -0.09 6.63 16 11 O -0.52 -7.33 13.13 5.50 0.07 -7.25 16 12 N -0.69 -8.73 5.55 -60.73 -0.34 -9.07 16 13 C 0.12 1.58 5.58 -4.04 -0.02 1.56 16 14 C -0.09 -1.32 5.26 -26.73 -0.14 -1.46 16 15 C -0.12 -1.85 1.55 -154.51 -0.24 -2.09 16 16 C 0.19 3.73 6.09 -4.04 -0.02 3.71 16 17 N -0.73 -18.15 5.34 -59.90 -0.32 -18.47 16 18 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 21 N -0.93 -28.17 13.06 55.49 0.72 -27.45 16 22 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 C -0.16 -2.34 9.90 -26.73 -0.26 -2.61 16 27 C -0.18 -2.27 9.39 -26.74 -0.25 -2.52 16 28 C 0.11 0.97 5.73 -3.71 -0.02 0.94 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.15 1.59 4.18 -55.46 -0.23 1.36 16 38 H 0.41 4.92 7.96 -40.82 -0.33 4.60 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.07 0.90 7.26 -51.93 -0.38 0.52 16 41 H 0.07 0.82 7.91 -51.93 -0.41 0.41 16 42 H 0.09 1.52 7.60 -51.93 -0.39 1.12 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.02 0.40 8.09 -51.93 -0.42 -0.02 16 45 H 0.38 10.07 7.37 -40.82 -0.30 9.77 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.09 1.16 8.06 -51.93 -0.42 0.74 16 48 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 49 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 50 H 0.09 0.99 7.68 -51.93 -0.40 0.59 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 52 H 0.09 0.94 7.00 -51.93 -0.36 0.57 16 LS Contribution 413.90 15.07 6.24 6.24 Total: -1.00 -31.73 413.90 -9.81 -41.53 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -9.10 Total: 10.82 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.63 Total: 0.43 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.45 Total: -61.65 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: 0.16 Total: -14.92 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.73 -9.81 -41.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167403273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.780 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds