Wall clock time and date at job start Tue Mar 31 2020 21:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.52106 * 2 1 4 4 C 1.53045 * 109.49957 * 120.07739 * 2 1 3 5 5 C 1.53030 * 109.54062 * 181.31619 * 4 2 1 6 6 C 1.53192 * 109.31651 * 298.63938 * 5 4 2 7 7 N 1.46932 * 108.77634 * 54.63190 * 6 5 4 8 8 C 1.34770 * 120.63183 * 126.37115 * 7 6 5 9 9 O 1.21352 * 119.99951 * 187.39448 * 8 7 6 10 10 C 1.49453 * 119.99876 * 7.39599 * 8 7 6 11 11 O 1.21342 * 120.00285 * 6.73576 * 10 8 7 12 12 N 1.34781 * 119.99674 * 186.73773 * 10 8 7 13 13 C 1.46500 * 119.99709 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46872 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47045 * 175.01278 * 14 13 12 16 16 C 1.53002 * 115.54775 * 279.01966 * 15 14 13 17 17 N 1.46503 * 109.47136 * 303.99564 * 16 15 14 18 18 C 1.36941 * 119.99790 * 174.51897 * 17 16 15 19 19 H 1.07997 * 120.00070 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99754 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99795 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47334 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.46959 * 120.00213 * 22 20 18 25 25 H 1.48499 * 109.46846 * 239.99550 * 22 20 18 26 26 C 1.53004 * 117.50034 * 133.31496 * 15 14 13 27 27 C 1.52998 * 117.50251 * 64.68974 * 15 14 13 28 28 C 1.46929 * 118.73547 * 306.64440 * 7 6 5 29 29 H 1.09003 * 109.47301 * 299.91517 * 1 2 3 30 30 H 1.08993 * 109.47732 * 59.92199 * 1 2 3 31 31 H 1.09006 * 109.47283 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45523 * 61.29417 * 4 2 1 33 33 H 1.09003 * 109.45960 * 301.34271 * 4 2 1 34 34 H 1.08998 * 109.50225 * 178.68403 * 5 4 2 35 35 H 1.09006 * 109.52417 * 58.60030 * 5 4 2 36 36 H 1.09002 * 109.58570 * 294.84896 * 6 5 4 37 37 H 1.08999 * 109.59202 * 174.41810 * 6 5 4 38 38 H 0.96998 * 119.99809 * 359.97438 * 12 10 8 39 39 H 1.08994 * 109.47238 * 59.99397 * 13 12 10 40 40 H 1.09000 * 109.46989 * 299.99257 * 13 12 10 41 41 H 1.09004 * 109.47042 * 295.01116 * 14 13 12 42 42 H 1.08998 * 109.47268 * 55.00875 * 14 13 12 43 43 H 1.08995 * 109.47222 * 63.99812 * 16 15 14 44 44 H 1.08998 * 109.47057 * 183.99315 * 16 15 14 45 45 H 0.96993 * 119.99652 * 354.51307 * 17 16 15 46 46 H 0.97002 * 119.99934 * 180.02562 * 21 20 18 47 47 H 1.08997 * 117.49831 * 359.97438 * 26 15 14 48 48 H 1.08997 * 117.50140 * 145.02249 * 26 15 14 49 49 H 1.09001 * 117.49976 * 214.98268 * 27 15 14 50 50 H 1.09003 * 117.49649 * 0.02562 * 27 15 14 51 51 H 1.09001 * 109.58584 * 173.14387 * 28 7 6 52 52 H 1.08994 * 109.58950 * 293.56831 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5708 -0.6950 1.2661 6 6 4.1053 -1.4266 0.0309 7 7 3.5046 -0.8291 -1.1696 8 6 4.2811 -0.3855 -2.1779 9 8 3.7855 0.2257 -3.1017 10 6 5.7526 -0.6465 -2.1582 11 8 6.2309 -1.3601 -1.3013 12 7 6.5483 -0.0891 -3.0925 13 6 7.9906 -0.3454 -3.0736 14 6 8.6560 0.3994 -4.2326 15 6 10.1743 0.2336 -4.1406 16 6 10.8814 1.1670 -3.1559 17 7 10.5634 2.5582 -3.4873 18 6 10.9941 3.5716 -2.6732 19 1 11.5678 3.3452 -1.7866 20 6 10.6923 4.8896 -2.9869 21 7 9.9926 5.1654 -4.0671 22 14 11.2792 6.2720 -1.8760 23 1 12.0396 5.7014 -0.7353 24 1 12.1568 7.1884 -2.6477 25 1 10.1072 7.0252 -1.3619 26 6 10.9229 -0.1412 -5.4212 27 6 10.7425 -1.1768 -4.3094 28 6 2.0415 -0.7188 -1.2471 29 1 -0.3634 0.5125 0.8908 30 1 -0.3634 0.5150 -0.8892 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6967 -1.7572 1.2354 33 1 1.6581 -0.2244 2.1390 34 1 3.9334 -1.1896 2.1671 35 1 3.9164 0.3388 1.2543 36 1 3.8376 -2.4817 0.0868 37 1 5.1896 -1.3245 -0.0137 38 1 6.1659 0.4810 -3.7777 39 1 8.1709 -1.4152 -3.1782 40 1 8.4091 0.0030 -2.1294 41 1 8.3025 -0.0107 -5.1787 42 1 8.4021 1.4579 -4.1779 43 1 10.5445 0.9487 -2.1425 44 1 11.9588 1.0151 -3.2211 45 1 10.0479 2.7613 -4.2833 46 1 9.7821 6.0865 -4.2865 47 1 10.3338 -0.2702 -6.3292 48 1 11.9195 0.2771 -5.5624 49 1 11.6204 -1.4397 -3.7192 50 1 10.0348 -1.9867 -4.4865 51 1 1.7646 -0.1497 -2.1346 52 1 1.6021 -1.7149 -1.2975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167403274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:28 Heat of formation + Delta-G solvation = -34.856824 kcal Electronic energy + Delta-G solvation = -29607.513766 eV Core-core repulsion = 25608.070142 eV Total energy + Delta-G solvation = -3999.443623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07807 -39.18252 -38.26354 -37.85789 -35.26116 -33.96290 -33.81244 -32.14887 -30.81201 -30.15958 -27.55246 -26.42422 -25.93377 -24.30387 -22.80117 -22.61138 -22.46695 -21.69627 -20.72359 -19.94795 -18.54738 -17.56261 -17.19759 -17.02762 -16.25713 -15.92255 -15.59616 -15.23190 -14.98733 -14.85772 -14.58901 -14.37819 -14.21768 -13.97872 -13.74021 -13.38947 -13.24588 -13.11000 -12.92097 -12.73874 -12.42711 -12.33967 -12.12478 -11.94824 -11.65723 -11.47959 -11.38386 -11.17327 -11.16051 -10.97237 -10.87010 -10.84216 -10.71458 -10.56092 -10.12715 -9.92311 -9.67940 -9.37053 -9.31750 -9.11663 -8.95196 -8.84732 -6.90231 -5.75931 -3.03961 1.33077 2.20485 3.10684 3.36788 3.43800 3.49629 3.51725 4.02577 4.21473 4.40050 4.46039 4.54793 4.61331 4.75479 4.98408 4.99768 5.05294 5.09262 5.12616 5.19636 5.26492 5.28280 5.36725 5.41329 5.46606 5.48648 5.58247 5.63682 5.64811 5.67588 5.71465 5.77448 5.81784 5.84291 5.88408 6.06616 6.09921 6.13741 6.17315 6.19089 6.40178 6.41322 6.43741 6.57503 6.74116 6.81838 6.88204 7.18942 7.64168 7.71438 7.92330 8.43114 9.54801 10.12692 10.48075 11.46928 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010368 B = 0.002609 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.055583 B =10731.254654 C =12335.221247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.076 0.924 4 C -0.116 4.116 5 C -0.137 4.137 6 C 0.065 3.935 7 N -0.583 5.583 8 C 0.509 3.491 9 O -0.521 6.521 10 C 0.507 3.493 11 O -0.517 6.517 12 N -0.689 5.689 13 C 0.123 3.877 14 C -0.094 4.094 15 C -0.119 4.119 16 C 0.188 3.812 17 N -0.728 5.728 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.166 4.166 27 C -0.178 4.178 28 C 0.112 3.888 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.145 0.855 38 H 0.414 0.586 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.064 0.936 42 H 0.092 0.908 43 H 0.026 0.974 44 H 0.018 0.982 45 H 0.385 0.615 46 H 0.254 0.746 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.090 0.910 51 H 0.094 0.906 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.751 -17.040 5.801 23.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.094 0.906 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.056 4.056 7 N -0.316 5.316 8 C 0.291 3.709 9 O -0.397 6.397 10 C 0.288 3.712 11 O -0.395 6.395 12 N -0.340 5.340 13 C 0.000 4.000 14 C -0.132 4.132 15 C -0.120 4.120 16 C 0.060 3.940 17 N -0.372 5.372 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.203 4.203 27 C -0.215 4.215 28 C -0.010 4.010 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.162 0.838 38 H 0.250 0.750 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.107 0.893 48 H 0.114 0.886 49 H 0.111 0.889 50 H 0.108 0.892 51 H 0.112 0.888 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.568 -17.129 6.035 23.921 hybrid contribution -0.121 1.180 0.065 1.188 sum -15.689 -15.950 6.101 23.190 Atomic orbital electron populations 1.21760 0.94179 1.02041 1.02241 1.21435 0.96074 1.00405 0.94822 0.90552 1.21624 0.95649 1.00668 0.97444 1.21960 0.95667 1.01708 0.98191 1.22963 1.03872 0.96417 0.82336 1.47934 1.06621 1.59043 1.18013 1.20166 0.87833 0.79852 0.83026 1.90761 1.74973 1.38815 1.35184 1.20028 0.87430 0.81264 0.82429 1.90453 1.75679 1.37980 1.35391 1.45903 1.08724 1.48910 1.30488 1.21544 0.77233 1.00307 1.00900 1.21284 0.92693 1.02540 0.96654 1.21562 0.93500 0.96759 1.00142 1.20180 0.95195 0.84581 0.94042 1.42319 1.65709 0.99370 1.29831 1.19264 1.27535 0.86213 1.03864 0.91215 1.24721 1.01003 0.97219 0.98035 1.69665 1.43807 1.18294 1.26337 0.86140 0.77857 0.82579 0.79774 1.20585 1.21905 1.21909 1.22999 1.02050 1.02798 0.92424 1.22973 1.03121 0.92141 1.03289 1.21714 0.78669 1.01104 0.99516 0.92187 0.92274 0.92472 0.91757 0.91624 0.90403 0.91468 0.91460 0.83806 0.74974 0.91127 0.90180 0.91727 0.88945 0.95587 0.96472 0.78121 0.93600 0.89253 0.88648 0.88893 0.89202 0.88754 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.20 37.16 0.34 -0.54 16 2 C -0.11 -0.85 2.86 -90.72 -0.26 -1.11 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.12 -0.83 5.17 -26.69 -0.14 -0.97 16 5 C -0.14 -1.15 6.08 -26.62 -0.16 -1.31 16 6 C 0.07 0.65 6.02 -3.71 -0.02 0.63 16 7 N -0.58 -6.59 2.98 -173.53 -0.52 -7.11 16 8 C 0.51 6.95 7.74 -11.59 -0.09 6.86 16 9 O -0.52 -8.11 15.92 5.50 0.09 -8.02 16 10 C 0.51 7.11 7.75 -11.58 -0.09 7.02 16 11 O -0.52 -7.69 13.15 5.50 0.07 -7.62 16 12 N -0.69 -9.32 5.55 -60.73 -0.34 -9.66 16 13 C 0.12 1.69 5.50 -4.04 -0.02 1.67 16 14 C -0.09 -1.36 5.19 -26.73 -0.14 -1.50 16 15 C -0.12 -1.84 1.63 -154.51 -0.25 -2.10 16 16 C 0.19 3.71 6.15 -4.04 -0.02 3.69 16 17 N -0.73 -18.02 5.22 -59.91 -0.31 -18.33 16 18 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 19 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 20 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 21 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 22 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 C -0.17 -2.34 9.87 -26.73 -0.26 -2.60 16 27 C -0.18 -2.26 9.60 -26.73 -0.26 -2.52 16 28 C 0.11 1.04 5.70 -3.93 -0.02 1.02 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.15 1.73 4.23 -55.20 -0.23 1.50 16 38 H 0.41 5.36 7.96 -40.82 -0.33 5.03 16 39 H 0.07 0.90 7.79 -51.93 -0.40 0.50 16 40 H 0.08 1.25 7.90 -51.93 -0.41 0.84 16 41 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 42 H 0.09 1.61 6.95 -51.93 -0.36 1.25 16 43 H 0.03 0.53 7.90 -51.93 -0.41 0.12 16 44 H 0.02 0.35 8.10 -51.93 -0.42 -0.07 16 45 H 0.38 9.98 6.83 -40.82 -0.28 9.70 16 46 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 48 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 49 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 50 H 0.09 1.00 7.96 -51.93 -0.41 0.59 16 51 H 0.09 0.98 7.00 -51.93 -0.36 0.62 16 52 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 413.18 15.07 6.23 6.23 Total: -1.00 -31.51 413.18 -9.80 -41.31 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -9.07 Total: 12.03 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.65 Total: 0.98 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.44 Total: -62.37 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.16 Total: -15.64 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.51 -9.80 -41.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167403274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.455 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds