Wall clock time and date at job start Tue Mar 31 2020 21:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.52106 * 2 1 4 4 C 1.53045 * 109.49957 * 120.07739 * 2 1 3 5 5 C 1.53030 * 109.54062 * 181.31619 * 4 2 1 6 6 C 1.53192 * 109.31651 * 298.63938 * 5 4 2 7 7 N 1.46932 * 108.77634 * 54.63190 * 6 5 4 8 8 C 1.34770 * 120.63183 * 126.37115 * 7 6 5 9 9 O 1.21352 * 119.99951 * 187.39448 * 8 7 6 10 10 C 1.49453 * 119.99876 * 7.39599 * 8 7 6 11 11 O 1.21342 * 120.00285 * 6.73576 * 10 8 7 12 12 N 1.34781 * 119.99674 * 186.73773 * 10 8 7 13 13 C 1.46500 * 119.99709 * 180.02562 * 12 10 8 14 14 C 1.52999 * 109.46872 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47045 * 175.01278 * 14 13 12 16 16 C 1.53002 * 115.54775 * 279.01966 * 15 14 13 17 17 N 1.46503 * 109.47136 * 303.99564 * 16 15 14 18 18 C 1.36941 * 119.99790 * 174.51897 * 17 16 15 19 19 H 1.07997 * 120.00070 * 359.97438 * 18 17 16 20 20 C 1.38810 * 119.99754 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99795 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47334 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.46959 * 120.00213 * 22 20 18 25 25 H 1.48499 * 109.46846 * 239.99550 * 22 20 18 26 26 C 1.53004 * 117.50034 * 133.31496 * 15 14 13 27 27 C 1.52998 * 117.50251 * 64.68974 * 15 14 13 28 28 C 1.46929 * 118.73547 * 306.64440 * 7 6 5 29 29 H 1.09003 * 109.47301 * 299.91517 * 1 2 3 30 30 H 1.08993 * 109.47732 * 59.92199 * 1 2 3 31 31 H 1.09006 * 109.47283 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.45523 * 61.29417 * 4 2 1 33 33 H 1.09003 * 109.45960 * 301.34271 * 4 2 1 34 34 H 1.08998 * 109.50225 * 178.68403 * 5 4 2 35 35 H 1.09006 * 109.52417 * 58.60030 * 5 4 2 36 36 H 1.09002 * 109.58570 * 294.84896 * 6 5 4 37 37 H 1.08999 * 109.59202 * 174.41810 * 6 5 4 38 38 H 0.96998 * 119.99809 * 359.97438 * 12 10 8 39 39 H 1.08994 * 109.47238 * 59.99397 * 13 12 10 40 40 H 1.09000 * 109.46989 * 299.99257 * 13 12 10 41 41 H 1.09004 * 109.47042 * 295.01116 * 14 13 12 42 42 H 1.08998 * 109.47268 * 55.00875 * 14 13 12 43 43 H 1.08995 * 109.47222 * 63.99812 * 16 15 14 44 44 H 1.08998 * 109.47057 * 183.99315 * 16 15 14 45 45 H 0.96993 * 119.99652 * 354.51307 * 17 16 15 46 46 H 0.97002 * 119.99934 * 180.02562 * 21 20 18 47 47 H 1.08997 * 117.49831 * 359.97438 * 26 15 14 48 48 H 1.08997 * 117.50140 * 145.02249 * 26 15 14 49 49 H 1.09001 * 117.49976 * 214.98268 * 27 15 14 50 50 H 1.09003 * 117.49649 * 0.02562 * 27 15 14 51 51 H 1.09001 * 109.58584 * 173.14387 * 28 7 6 52 52 H 1.08994 * 109.58950 * 293.56831 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0408 -0.7230 1.2484 5 6 3.5708 -0.6950 1.2661 6 6 4.1053 -1.4266 0.0309 7 7 3.5046 -0.8291 -1.1696 8 6 4.2811 -0.3855 -2.1779 9 8 3.7855 0.2257 -3.1017 10 6 5.7526 -0.6465 -2.1582 11 8 6.2309 -1.3601 -1.3013 12 7 6.5483 -0.0891 -3.0925 13 6 7.9906 -0.3454 -3.0736 14 6 8.6560 0.3994 -4.2326 15 6 10.1743 0.2336 -4.1406 16 6 10.8814 1.1670 -3.1559 17 7 10.5634 2.5582 -3.4873 18 6 10.9941 3.5716 -2.6732 19 1 11.5678 3.3452 -1.7866 20 6 10.6923 4.8896 -2.9869 21 7 9.9926 5.1654 -4.0671 22 14 11.2792 6.2720 -1.8760 23 1 12.0396 5.7014 -0.7353 24 1 12.1568 7.1884 -2.6477 25 1 10.1072 7.0252 -1.3619 26 6 10.9229 -0.1412 -5.4212 27 6 10.7425 -1.1768 -4.3094 28 6 2.0415 -0.7188 -1.2471 29 1 -0.3634 0.5125 0.8908 30 1 -0.3634 0.5150 -0.8892 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6967 -1.7572 1.2354 33 1 1.6581 -0.2244 2.1390 34 1 3.9334 -1.1896 2.1671 35 1 3.9164 0.3388 1.2543 36 1 3.8376 -2.4817 0.0868 37 1 5.1896 -1.3245 -0.0137 38 1 6.1659 0.4810 -3.7777 39 1 8.1709 -1.4152 -3.1782 40 1 8.4091 0.0030 -2.1294 41 1 8.3025 -0.0107 -5.1787 42 1 8.4021 1.4579 -4.1779 43 1 10.5445 0.9487 -2.1425 44 1 11.9588 1.0151 -3.2211 45 1 10.0479 2.7613 -4.2833 46 1 9.7821 6.0865 -4.2865 47 1 10.3338 -0.2702 -6.3292 48 1 11.9195 0.2771 -5.5624 49 1 11.6204 -1.4397 -3.7192 50 1 10.0348 -1.9867 -4.4865 51 1 1.7646 -0.1497 -2.1346 52 1 1.6021 -1.7149 -1.2975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167403274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:19 Heat of formation + Delta-G solvation = -54.757768 kcal Electronic energy + Delta-G solvation = -29608.376735 eV Core-core repulsion = 25608.070142 eV Total energy + Delta-G solvation = -4000.306593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 6.17 seconds Orbital eigenvalues (eV) -42.10047 -40.20521 -39.45611 -38.82042 -36.38197 -35.83530 -34.66824 -32.87331 -32.78930 -31.34382 -28.35150 -27.80889 -27.12576 -25.36791 -24.61592 -23.65621 -23.28164 -22.79579 -21.67649 -20.77973 -19.88571 -19.06590 -18.55511 -18.18776 -17.32546 -17.04460 -16.70381 -16.40236 -16.26986 -15.93859 -15.81561 -15.43470 -15.27499 -15.10382 -14.90011 -14.73937 -14.47644 -14.18380 -14.10033 -13.89891 -13.61599 -13.20134 -13.09944 -13.03281 -12.82943 -12.80566 -12.59149 -12.48018 -12.25969 -12.10519 -12.05632 -11.94289 -11.88233 -11.79558 -11.66525 -11.35210 -11.09875 -10.92822 -10.57082 -10.40156 -10.17605 -9.83927 -8.96718 -7.94783 -5.22098 0.24112 1.20904 1.45935 1.46327 1.56307 2.02244 2.38453 2.54265 2.89935 3.19380 3.38881 3.72160 3.81571 3.81850 3.84424 3.89683 3.96838 4.05151 4.07117 4.23478 4.29011 4.38046 4.38430 4.47292 4.55148 4.60710 4.62698 4.74072 4.79446 4.84790 4.86110 4.86721 4.95028 5.00233 5.04198 5.09600 5.12599 5.16061 5.22228 5.26083 5.26588 5.32317 5.35297 5.38465 5.41775 5.47703 5.49850 5.89784 6.14586 6.27774 6.60458 6.83913 7.34874 8.11875 8.36336 9.28672 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010368 B = 0.002609 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.055583 B =10731.254654 C =12335.221247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.055 0.945 4 C -0.112 4.112 5 C -0.135 4.135 6 C 0.064 3.936 7 N -0.577 5.577 8 C 0.503 3.497 9 O -0.549 6.549 10 C 0.506 3.494 11 O -0.527 6.527 12 N -0.688 5.688 13 C 0.132 3.868 14 C -0.082 4.082 15 C -0.140 4.140 16 C 0.187 3.813 17 N -0.737 5.737 18 C -0.242 4.242 19 H 0.072 0.928 20 C -0.074 4.074 21 N -0.966 5.966 22 Si 0.969 3.031 23 H -0.268 1.268 24 H -0.293 1.293 25 H -0.295 1.295 26 C -0.167 4.167 27 C -0.147 4.147 28 C 0.108 3.892 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.416 0.584 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.021 0.979 44 H 0.015 0.985 45 H 0.376 0.624 46 H 0.250 0.750 47 H 0.106 0.894 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.116 0.884 51 H 0.079 0.921 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.476 -19.125 6.801 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.125 4.125 3 H 0.074 0.926 4 C -0.149 4.149 5 C -0.173 4.173 6 C -0.057 4.057 7 N -0.309 5.309 8 C 0.286 3.714 9 O -0.427 6.427 10 C 0.287 3.713 11 O -0.406 6.406 12 N -0.340 5.340 13 C 0.010 3.990 14 C -0.120 4.120 15 C -0.141 4.141 16 C 0.061 3.939 17 N -0.380 5.380 18 C -0.374 4.374 19 H 0.090 0.910 20 C -0.267 4.267 21 N -0.617 5.617 22 Si 0.798 3.202 23 H -0.192 1.192 24 H -0.220 1.220 25 H -0.222 1.222 26 C -0.204 4.204 27 C -0.184 4.184 28 C -0.013 4.013 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.142 0.858 38 H 0.252 0.748 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.033 0.967 45 H 0.209 0.791 46 H 0.059 0.941 47 H 0.124 0.876 48 H 0.101 0.899 49 H 0.118 0.882 50 H 0.134 0.866 51 H 0.098 0.902 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.282 -19.261 7.080 26.196 hybrid contribution 0.126 1.752 -0.195 1.768 sum -16.156 -17.508 6.885 24.799 Atomic orbital electron populations 1.21728 0.92517 1.03013 1.02487 1.21411 0.97382 0.99113 0.94559 0.92637 1.21616 0.94411 1.01591 0.97285 1.21951 0.96792 1.00542 0.97977 1.22988 1.02776 0.97572 0.82378 1.48116 1.07474 1.57713 1.17598 1.20146 0.87767 0.80077 0.83414 1.90744 1.75257 1.40374 1.36369 1.20167 0.87744 0.81139 0.82249 1.90467 1.76032 1.38442 1.35622 1.45916 1.08669 1.48869 1.30501 1.21425 0.77133 1.01026 0.99464 1.21134 0.92270 1.00552 0.98048 1.21373 0.93709 0.98396 1.00604 1.20259 0.95415 0.83116 0.95149 1.42488 1.65383 1.01000 1.29121 1.19634 1.26560 0.87225 1.03948 0.91013 1.25499 1.01937 0.99559 0.99656 1.69812 1.45477 1.18329 1.28095 0.85137 0.77169 0.79525 0.78343 1.19195 1.21980 1.22187 1.23060 1.01347 1.03173 0.92807 1.23071 1.03144 0.90911 1.01258 1.21914 0.77376 1.02314 0.99740 0.91453 0.92589 0.91097 0.90173 0.90521 0.88673 0.93279 0.89656 0.85755 0.74756 0.89305 0.92452 0.89348 0.92458 0.96113 0.96684 0.79133 0.94091 0.87602 0.89865 0.88198 0.86619 0.90227 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.20 71.98 0.66 -0.79 16 2 C -0.11 -1.54 2.86 -10.86 -0.03 -1.57 16 3 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 4 C -0.11 -1.34 5.17 30.62 0.16 -1.18 16 5 C -0.13 -2.07 6.08 30.67 0.19 -1.88 16 6 C 0.06 1.20 6.02 86.36 0.52 1.72 16 7 N -0.58 -12.81 2.98 -821.29 -2.45 -15.26 16 8 C 0.50 13.95 7.74 87.27 0.68 14.63 16 9 O -0.55 -17.55 15.92 -3.25 -0.05 -17.60 16 10 C 0.51 14.30 7.75 87.27 0.68 14.98 16 11 O -0.53 -15.62 13.15 -3.22 -0.04 -15.66 16 12 N -0.69 -18.80 5.55 -464.42 -2.58 -21.38 16 13 C 0.13 3.58 5.50 86.38 0.48 4.06 16 14 C -0.08 -2.36 5.19 30.59 0.16 -2.20 16 15 C -0.14 -4.22 1.63 -52.18 -0.09 -4.31 16 16 C 0.19 7.46 6.15 86.38 0.53 7.99 16 17 N -0.74 -37.35 5.22 -343.45 -1.79 -39.14 16 18 C -0.24 -13.63 9.99 84.03 0.84 -12.80 16 19 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 21 N -0.97 -59.41 13.06 21.65 0.28 -59.13 16 22 Si 0.97 46.82 29.55 68.60 2.03 48.85 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 26 C -0.17 -4.42 9.87 30.60 0.30 -4.12 16 27 C -0.15 -3.32 9.60 30.59 0.29 -3.02 16 28 C 0.11 1.90 5.70 86.22 0.49 2.40 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.13 2.96 4.23 -54.18 -0.23 2.73 16 38 H 0.42 11.06 7.96 -92.71 -0.74 10.32 16 39 H 0.09 2.10 7.79 -2.39 -0.02 2.08 16 40 H 0.06 1.82 7.90 -2.39 -0.02 1.80 16 41 H 0.09 2.10 7.94 -2.38 -0.02 2.08 16 42 H 0.06 2.06 6.95 -2.39 -0.02 2.05 16 43 H 0.02 0.85 7.90 -2.39 -0.02 0.83 16 44 H 0.02 0.62 8.10 -2.39 -0.02 0.60 16 45 H 0.38 20.17 6.83 -92.71 -0.63 19.54 16 46 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 47 H 0.11 2.46 8.08 -2.39 -0.02 2.44 16 48 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.12 2.09 7.96 -2.39 -0.02 2.07 16 51 H 0.08 1.67 7.00 -2.39 -0.02 1.65 16 52 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -69.06 413.18 1.05 -68.01 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: -0.67 Total: 41.24 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 6.32 Total: 10.07 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -6.53 Total: -134.91 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.09 Total: -33.26 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -69.06 1.05 -68.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167403274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.257 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.17 seconds