Wall clock time and date at job start Tue Mar 31 2020 22:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08999 * 115.54670 * 2 1 4 4 C 1.53070 * 117.49183 * 145.73097 * 2 1 3 5 5 C 1.52991 * 59.98427 * 107.48333 * 4 2 1 6 6 H 1.08996 * 117.50308 * 252.49444 * 5 4 2 7 7 C 1.50703 * 117.49901 * 107.49806 * 5 4 2 8 8 O 1.21280 * 120.00197 * 291.25266 * 7 5 4 9 9 N 1.34785 * 120.00136 * 111.25444 * 7 5 4 10 10 C 1.48142 * 127.83203 * 359.97438 * 9 7 5 11 11 C 1.54390 * 104.61475 * 140.39596 * 10 9 7 12 12 H 1.09005 * 110.34642 * 142.73266 * 11 10 9 13 13 C 1.52996 * 110.43322 * 264.94887 * 11 10 9 14 14 C 1.54285 * 104.96231 * 23.86591 * 11 10 9 15 15 C 1.53007 * 110.34124 * 241.02584 * 14 11 10 16 16 C 1.52997 * 110.34752 * 118.87096 * 14 11 10 17 17 N 1.46899 * 109.47254 * 179.97438 * 16 14 11 18 18 C 1.46904 * 111.00029 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.46800 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00338 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99855 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00193 * 180.02562 * 21 19 18 23 23 H 1.08002 * 120.00238 * 359.97438 * 22 21 19 24 24 C 1.38951 * 120.00205 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99909 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00181 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47099 * 359.97438 * 26 24 22 28 28 H 1.48507 * 109.47011 * 119.99494 * 26 24 22 29 29 H 1.48500 * 109.46924 * 239.99470 * 26 24 22 30 30 C 1.48139 * 127.83831 * 179.97438 * 9 7 5 31 31 H 1.08999 * 109.46634 * 205.66769 * 1 2 3 32 32 H 1.08997 * 109.46562 * 325.66596 * 1 2 3 33 33 H 1.09000 * 109.46727 * 85.66884 * 1 2 3 34 34 H 1.08997 * 117.49811 * 359.97438 * 4 2 1 35 35 H 1.09005 * 117.51049 * 214.96392 * 4 2 1 36 36 H 1.08995 * 110.41544 * 21.61259 * 10 9 7 37 37 H 1.09004 * 110.50491 * 259.22423 * 10 9 7 38 38 H 1.08997 * 109.47231 * 175.59249 * 13 11 10 39 39 H 1.09000 * 109.46860 * 295.58938 * 13 11 10 40 40 H 1.08993 * 109.47418 * 55.58818 * 13 11 10 41 41 H 1.08996 * 109.47087 * 298.52252 * 15 14 11 42 42 H 1.09004 * 109.46922 * 58.52269 * 15 14 11 43 43 H 1.08999 * 109.47205 * 178.52082 * 15 14 11 44 44 H 1.09002 * 109.47153 * 59.99933 * 16 14 11 45 45 H 1.09001 * 109.46832 * 300.00123 * 16 14 11 46 46 H 1.00902 * 111.00582 * 303.95797 * 17 16 14 47 47 H 1.08995 * 109.47167 * 300.00240 * 18 17 16 48 48 H 1.09003 * 109.46442 * 60.00214 * 18 17 16 49 49 H 0.97000 * 119.99567 * 0.02562 * 21 19 18 50 50 H 0.96998 * 120.00315 * 179.97438 * 25 24 22 51 51 H 1.08993 * 110.40911 * 100.82254 * 30 9 7 52 52 H 1.09005 * 110.40913 * 338.38799 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2367 -1.1221 0.7646 5 6 2.2365 -1.1207 -0.7653 6 1 1.6113 -1.8578 -1.2692 7 6 3.5293 -0.7806 -1.4611 8 8 3.9710 0.3474 -1.4024 9 7 4.1947 -1.7300 -2.1486 10 6 3.8180 -3.1508 -2.3324 11 6 4.1812 -3.4634 -3.8001 12 1 4.5738 -4.4766 -3.8859 13 6 2.9574 -3.2901 -4.7017 14 6 5.2693 -2.4337 -4.1691 15 6 4.7955 -1.5504 -5.3252 16 6 6.5705 -3.1459 -4.5438 17 7 7.5918 -2.1489 -4.8919 18 6 8.8580 -2.7979 -5.2574 19 6 9.8790 -1.7460 -5.6066 20 8 9.5813 -0.5713 -5.5555 21 7 11.1230 -2.1105 -5.9757 22 6 12.0520 -1.1536 -6.2929 23 1 11.7870 -0.1076 -6.2474 24 6 13.3343 -1.5294 -6.6739 25 7 13.6566 -2.8022 -6.7298 26 14 14.5999 -0.2255 -7.1068 27 1 13.9909 1.1215 -6.9661 28 1 15.7632 -0.3415 -6.1909 29 1 15.0518 -0.4202 -8.5080 30 6 5.4685 -1.5892 -2.8916 31 1 -0.3632 -0.9263 0.4451 32 1 -0.3632 0.8486 0.5796 33 1 -0.3633 0.0776 -1.0248 34 1 1.6114 -1.8596 1.2676 35 1 3.1720 -0.8770 1.2680 36 1 2.7488 -3.2850 -2.1687 37 1 4.3882 -3.7876 -1.6560 38 1 3.2484 -3.4377 -5.7417 39 1 2.1986 -4.0236 -4.4292 40 1 2.5532 -2.2856 -4.5766 41 1 4.6103 -2.1693 -6.2030 42 1 3.8755 -1.0404 -5.0394 43 1 5.5633 -0.8121 -5.5566 44 1 6.3943 -3.7986 -5.3988 45 1 6.9159 -3.7404 -3.6980 46 1 7.2688 -1.5433 -5.6314 47 1 9.2193 -3.3893 -4.4161 48 1 8.6977 -3.4488 -6.1169 49 1 11.3608 -3.0500 -6.0169 50 1 14.5516 -3.0646 -6.9961 51 1 6.2975 -1.9809 -2.3024 52 1 5.6446 -0.5449 -3.1499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182240749.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:11 Heat of formation + Delta-G solvation = -48.459437 kcal Electronic energy + Delta-G solvation = -29553.486307 eV Core-core repulsion = 25553.452830 eV Total energy + Delta-G solvation = -4000.033477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.73849 -39.19959 -38.17320 -36.81537 -35.45912 -33.89854 -33.21462 -31.30955 -30.99734 -29.25691 -27.99017 -27.21841 -26.00216 -25.32145 -23.94671 -23.16666 -21.64250 -21.05822 -19.36002 -19.34051 -18.66470 -17.89405 -17.46785 -16.61134 -15.96395 -15.69479 -15.57882 -14.87208 -14.79351 -14.46682 -14.28977 -14.09750 -14.03540 -13.86614 -13.58844 -13.51378 -13.32425 -13.18946 -12.81572 -12.62373 -12.41464 -12.36584 -12.05015 -11.90153 -11.79862 -11.73970 -11.51575 -11.44646 -11.38244 -11.04445 -10.75696 -10.70574 -10.67050 -10.56798 -10.38026 -10.32800 -10.20588 -9.89571 -9.50382 -8.81780 -8.43907 -8.04109 -7.94061 -6.40382 -3.80926 2.34966 2.74816 3.17668 3.28168 3.35884 3.50105 3.92507 3.98272 4.16724 4.24203 4.30719 4.41076 4.44327 4.52574 4.64381 4.78417 4.92860 4.96459 4.99955 5.08065 5.16214 5.20708 5.21057 5.26351 5.27820 5.34511 5.38375 5.45500 5.50106 5.58159 5.61342 5.64861 5.67090 5.68928 5.78901 5.84094 5.88904 5.89922 5.93507 5.97779 5.99120 6.09283 6.23278 6.29153 6.33877 7.21667 7.44155 7.57077 7.66897 8.06611 8.08410 8.63062 9.19814 9.56149 10.07754 10.77472 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.001999 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.115849 B =14002.930092 C =14763.814551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.124 4.124 3 H 0.118 0.882 4 C -0.149 4.149 5 C -0.187 4.187 6 H 0.121 0.879 7 C 0.561 3.439 8 O -0.539 6.539 9 N -0.619 5.619 10 C 0.106 3.894 11 C -0.100 4.100 12 H 0.088 0.912 13 C -0.144 4.144 14 C -0.065 4.065 15 C -0.143 4.143 16 C 0.073 3.927 17 N -0.669 5.669 18 C 0.051 3.949 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 C 0.126 3.874 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.031 0.969 45 H 0.073 0.927 46 H 0.350 0.650 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.270 0.730 51 H 0.078 0.922 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.579 -6.904 9.786 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 H 0.136 0.864 4 C -0.186 4.186 5 C -0.208 4.208 6 H 0.139 0.861 7 C 0.350 3.650 8 O -0.416 6.416 9 N -0.353 5.353 10 C -0.017 4.017 11 C -0.119 4.119 12 H 0.106 0.894 13 C -0.201 4.201 14 C -0.067 4.067 15 C -0.200 4.200 16 C -0.057 4.057 17 N -0.303 5.303 18 C -0.082 4.082 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 C 0.004 3.996 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.092 0.908 46 H 0.171 0.829 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.096 0.904 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -26.216 -5.377 10.502 28.749 hybrid contribution 0.793 -0.687 -1.231 1.618 sum -25.423 -6.065 9.271 27.732 Atomic orbital electron populations 1.21398 0.92207 1.02194 1.02192 1.22409 0.95200 0.95196 1.01404 0.86443 1.23108 1.03173 1.01524 0.90816 1.22256 0.97639 1.05191 0.95688 0.86148 1.19231 0.84205 0.83589 0.77965 1.90729 1.68727 1.20568 1.61545 1.48916 1.24775 1.10015 1.51576 1.22468 1.00806 0.82185 0.96263 1.22173 0.95944 0.99556 0.94275 0.89377 1.21919 0.96656 1.01772 0.99725 1.21500 0.94187 0.95230 0.95758 1.21980 1.01622 0.99513 0.96933 1.22025 0.90327 0.93418 0.99908 1.60104 1.02345 1.19890 1.47948 1.21662 0.90740 0.95938 0.99825 1.19826 0.83715 0.89632 0.84211 1.90532 1.79594 1.18696 1.57738 1.41871 1.09318 1.09741 1.59240 1.19759 0.90532 0.90687 1.41762 0.87870 1.25260 0.98225 0.96981 0.97547 1.69620 1.21357 1.15011 1.48410 0.85803 0.79993 0.80669 0.77901 1.19210 1.20753 1.20801 1.22371 0.84631 1.01982 0.90646 0.92398 0.91623 0.91962 0.87827 0.88244 0.90389 0.90870 0.91923 0.92868 0.92270 0.92354 0.92273 0.91549 0.95063 0.90825 0.82867 0.89644 0.93946 0.77494 0.91968 0.90395 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.19 37.16 0.38 -0.34 16 2 C -0.12 -1.03 5.92 -90.58 -0.54 -1.57 16 3 H 0.12 1.21 7.67 -51.93 -0.40 0.81 16 4 C -0.15 -1.11 9.88 -26.70 -0.26 -1.37 16 5 C -0.19 -1.64 5.30 -91.78 -0.49 -2.12 16 6 H 0.12 0.81 7.07 -51.93 -0.37 0.44 16 7 C 0.56 7.08 7.70 -10.98 -0.08 7.00 16 8 O -0.54 -9.17 16.52 5.56 0.09 -9.08 16 9 N -0.62 -6.81 3.32 -169.29 -0.56 -7.37 16 10 C 0.11 0.79 6.47 -2.41 -0.02 0.78 16 11 C -0.10 -0.74 3.30 -89.22 -0.29 -1.04 16 12 H 0.09 0.56 7.71 -51.93 -0.40 0.16 16 13 C -0.14 -0.97 7.93 37.16 0.29 -0.67 16 14 C -0.07 -0.67 0.82 -153.09 -0.13 -0.79 16 15 C -0.14 -1.52 6.90 37.16 0.26 -1.27 16 16 C 0.07 0.83 4.36 -3.83 -0.02 0.81 16 17 N -0.67 -10.47 5.84 -115.06 -0.67 -11.14 16 18 C 0.05 0.89 6.17 -4.98 -0.03 0.85 16 19 C 0.44 10.46 7.82 -10.99 -0.09 10.37 16 20 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 21 N -0.56 -14.41 5.29 -10.97 -0.06 -14.47 16 22 C -0.30 -8.40 9.68 -14.94 -0.14 -8.54 16 23 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 26 Si 0.93 21.29 29.55 -169.99 -5.02 16.27 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 C 0.13 1.58 5.91 -2.39 -0.01 1.56 16 31 H 0.06 0.27 7.90 -51.93 -0.41 -0.14 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.10 0.54 8.05 -51.93 -0.42 0.13 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.45 6.50 -51.93 -0.34 0.11 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.43 6.84 -51.93 -0.36 0.07 16 39 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.06 0.46 6.76 -51.93 -0.35 0.11 16 41 H 0.06 0.55 6.89 -51.93 -0.36 0.19 16 42 H 0.06 0.63 6.71 -51.93 -0.35 0.29 16 43 H 0.07 0.83 6.58 -51.93 -0.34 0.49 16 44 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 46 H 0.35 5.77 6.46 -39.29 -0.25 5.52 16 47 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.08 1.03 7.83 -51.93 -0.41 0.63 16 52 H 0.09 1.37 7.60 -51.93 -0.39 0.98 16 LS Contribution 411.67 15.07 6.20 6.20 Total: -1.00 -33.72 411.67 -9.25 -42.97 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -8.78 Total: 12.34 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.27 Total: 4.14 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.57 Total: -56.95 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: 0.18 Total: -24.97 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.72 -9.25 -42.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182240749.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.494 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds