Wall clock time and date at job start Tue Mar 31 2020 21:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.44133 * 2 1 4 4 C 1.54896 * 110.48426 * 122.54212 * 2 1 3 5 5 C 1.54885 * 102.74944 * 156.62019 * 4 2 1 6 6 C 1.54267 * 104.19683 * 322.05669 * 5 4 2 7 7 H 1.08998 * 110.03138 * 264.27706 * 6 5 4 8 8 C 1.50693 * 110.03368 * 142.89534 * 6 5 4 9 9 O 1.21284 * 119.99958 * 242.09567 * 8 6 5 10 10 N 1.34779 * 120.00244 * 62.09121 * 8 6 5 11 11 C 1.47620 * 118.74197 * 0.02562 * 10 8 6 12 12 C 1.53854 * 111.36717 * 138.28202 * 11 10 8 13 13 C 1.51266 * 109.57186 * 320.03883 * 12 11 10 14 14 N 1.46199 * 109.15879 * 92.34347 * 13 12 11 15 15 C 1.46902 * 111.00200 * 144.72101 * 14 13 12 16 16 C 1.50696 * 109.47141 * 64.75645 * 15 14 13 17 17 O 1.21296 * 119.99958 * 354.38249 * 16 15 14 18 18 N 1.34777 * 120.00350 * 174.37867 * 16 15 14 19 19 C 1.37100 * 120.00297 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99783 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99667 * 180.02562 * 19 18 16 22 22 N 1.31402 * 120.00290 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99554 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47073 * 89.99803 * 23 21 19 25 25 H 1.48504 * 109.47162 * 209.99605 * 23 21 19 26 26 H 1.48500 * 109.47006 * 329.99874 * 23 21 19 27 27 C 1.41445 * 116.34882 * 272.92831 * 14 13 12 28 28 C 1.44879 * 118.74818 * 180.02562 * 10 8 6 29 29 C 1.53874 * 106.63933 * 23.58782 * 6 5 4 30 30 H 1.09002 * 109.46909 * 298.91842 * 1 2 3 31 31 H 1.09004 * 109.46499 * 58.90907 * 1 2 3 32 32 H 1.08999 * 109.47317 * 178.91236 * 1 2 3 33 33 H 1.08999 * 110.75296 * 38.30256 * 4 2 1 34 34 H 1.09001 * 110.91185 * 275.01128 * 4 2 1 35 35 H 1.09004 * 110.48256 * 203.38071 * 5 4 2 36 36 H 1.09001 * 110.60059 * 80.78964 * 5 4 2 37 37 H 1.08999 * 109.10899 * 258.77978 * 11 10 8 38 38 H 1.08993 * 109.11806 * 17.84167 * 11 10 8 39 39 H 1.08995 * 109.55683 * 199.95406 * 12 11 10 40 40 H 1.09000 * 109.38643 * 80.01931 * 12 11 10 41 41 H 1.08994 * 109.53840 * 332.41901 * 13 12 11 42 42 H 1.09002 * 109.53349 * 212.26296 * 13 12 11 43 43 H 1.08996 * 109.47131 * 184.75666 * 15 14 13 44 44 H 1.09003 * 109.47271 * 304.75824 * 15 14 13 45 45 H 0.97007 * 119.99602 * 0.02562 * 18 16 15 46 46 H 0.97006 * 119.99923 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.39038 * 183.64172 * 27 14 13 48 48 H 1.09007 * 109.38317 * 303.42967 * 27 14 13 49 49 H 1.09003 * 109.43373 * 149.66248 * 28 10 8 50 50 H 1.08997 * 109.43724 * 29.78585 * 28 10 8 51 51 H 1.08992 * 110.03349 * 119.30688 * 29 6 5 52 52 H 1.09004 * 110.03274 * 240.74047 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0213 0.0000 4 6 2.0721 -0.7805 1.2232 5 6 3.4907 -1.1971 0.7616 6 6 3.3166 -1.5415 -0.7320 7 1 3.1701 -2.6148 -0.8531 8 6 4.5281 -1.0954 -1.5093 9 8 4.4155 -0.2592 -2.3805 10 7 5.7368 -1.6255 -1.2362 11 6 5.8419 -2.6416 -0.1705 12 6 6.7768 -3.7918 -0.5829 13 6 6.5490 -4.1327 -2.0389 14 7 7.4815 -3.3655 -2.8630 15 6 7.9208 -4.1465 -4.0271 16 6 6.7417 -4.4141 -4.9265 17 8 5.6270 -4.0850 -4.5792 18 7 6.9255 -5.0190 -6.1168 19 6 5.8528 -5.2619 -6.9352 20 1 4.8604 -4.9682 -6.6263 21 6 6.0423 -5.8860 -8.1621 22 7 7.2498 -6.2429 -8.5381 23 14 4.5808 -6.2164 -9.2776 24 1 4.3747 -5.0554 -10.1803 25 1 4.8416 -7.4332 -10.0879 26 1 3.3643 -6.4232 -8.4513 27 6 7.0594 -2.0722 -3.2503 28 6 6.8832 -1.1765 -1.9998 29 6 2.0698 -0.7813 -1.2171 30 1 -0.3633 0.4970 0.8995 31 1 -0.3632 0.5307 -0.8801 32 1 -0.3634 -1.0275 -0.0195 33 1 1.4580 -1.6583 1.4243 34 1 2.1249 -0.1383 2.1023 35 1 3.8314 -2.0707 1.3174 36 1 4.1916 -0.3713 0.8834 37 1 6.2310 -2.1721 0.7330 38 1 4.8510 -3.0454 0.0368 39 1 6.5703 -4.6680 0.0316 40 1 7.8129 -3.4849 -0.4399 41 1 5.5254 -3.8811 -2.3164 42 1 6.7171 -5.1984 -2.1944 43 1 8.6769 -3.5857 -4.5765 44 1 8.3435 -5.0933 -3.6909 45 1 7.8169 -5.2824 -6.3944 46 1 7.3821 -6.6783 -9.3948 47 1 7.8064 -1.6301 -3.9095 48 1 6.1086 -2.1450 -3.7783 49 1 7.7781 -1.2381 -1.3805 50 1 6.7291 -0.1436 -2.3119 51 1 2.3410 -0.0897 -2.0146 52 1 1.3178 -1.4857 -1.5728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197338524.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:15 Heat of formation + Delta-G solvation = -73.311683 kcal Electronic energy + Delta-G solvation = -31131.462854 eV Core-core repulsion = 27130.351703 eV Total energy + Delta-G solvation = -4001.111151 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69777 -39.16176 -37.80500 -36.89072 -35.00721 -33.77118 -32.53358 -31.73511 -31.27397 -29.29808 -28.78323 -26.61196 -25.99655 -25.05732 -23.95697 -22.65864 -20.81993 -20.57204 -20.10381 -19.18858 -18.51637 -17.89606 -17.42881 -16.42843 -15.89165 -15.68299 -15.30931 -15.24065 -14.81697 -14.67939 -14.32583 -14.06081 -13.84398 -13.78431 -13.64584 -13.28842 -13.21978 -12.98853 -12.68967 -12.24111 -11.96071 -11.86819 -11.70895 -11.51773 -11.45784 -11.40187 -11.19765 -11.09801 -11.01946 -10.93933 -10.89754 -10.75255 -10.71140 -10.54088 -10.41921 -10.38525 -10.24216 -9.53154 -9.47892 -9.01718 -8.49147 -7.98791 -7.44353 -6.43855 -3.84930 2.79138 3.13136 3.15767 3.24783 3.30641 3.86556 4.15795 4.27594 4.33729 4.37498 4.51315 4.80048 4.85273 5.01861 5.01962 5.10646 5.15832 5.22908 5.25254 5.30241 5.37342 5.41076 5.44256 5.46804 5.53992 5.60729 5.66068 5.71066 5.74030 5.78564 5.80798 5.85785 5.91938 5.99742 6.00416 6.02797 6.05547 6.13556 6.15123 6.26736 6.27512 6.34024 6.55508 6.60751 6.86401 7.41086 7.46639 7.52666 7.78715 8.03093 8.35930 8.58069 9.15184 9.51561 10.02520 10.72941 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003062 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.999177 B = 9141.607228 C =10610.679801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.114 4.114 6 C -0.113 4.113 7 H 0.097 0.903 8 C 0.517 3.483 9 O -0.537 6.537 10 N -0.602 5.602 11 C 0.108 3.892 12 C -0.133 4.133 13 C 0.075 3.925 14 N -0.535 5.535 15 C 0.049 3.951 16 C 0.406 3.594 17 O -0.593 6.593 18 N -0.559 5.559 19 C -0.300 4.300 20 H 0.101 0.899 21 C 0.024 3.976 22 N -0.900 5.900 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.047 3.953 28 C 0.122 3.878 29 C -0.115 4.115 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.072 0.928 48 H 0.062 0.938 49 H 0.077 0.923 50 H 0.083 0.917 51 H 0.089 0.911 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 7.706 20.854 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.152 4.152 6 C -0.134 4.134 7 H 0.115 0.885 8 C 0.305 3.695 9 O -0.414 6.414 10 N -0.335 5.335 11 C -0.014 4.014 12 C -0.172 4.172 13 C -0.053 4.053 14 N -0.258 5.258 15 C -0.082 4.082 16 C 0.191 3.809 17 O -0.479 6.479 18 N -0.195 5.195 19 C -0.430 4.430 20 H 0.119 0.881 21 C -0.178 4.178 22 N -0.541 5.541 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.083 4.083 28 C -0.002 4.002 29 C -0.153 4.153 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.226 0.774 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.101 0.899 51 H 0.108 0.892 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.169 8.358 20.726 22.571 hybrid contribution -0.632 -0.738 -1.456 1.750 sum -3.800 7.620 19.270 21.068 Atomic orbital electron populations 1.21798 0.95014 1.01796 1.01491 1.21988 0.95435 0.99378 0.94687 0.90864 1.22578 0.95629 0.99951 0.97511 1.22450 0.97897 1.01550 0.93262 1.21915 0.93980 1.01952 0.95574 0.88469 1.20593 0.84514 0.81223 0.83136 1.90655 1.84924 1.33327 1.32504 1.47724 1.07924 1.40837 1.36992 1.22129 1.01074 0.89145 0.89071 1.21953 1.00490 0.97293 0.97479 1.21404 0.96335 0.96727 0.90838 1.58880 1.43894 1.02998 1.20050 1.22065 0.96382 0.98894 0.90894 1.21108 0.91090 0.84489 0.84225 1.90502 1.25639 1.56903 1.74840 1.42020 1.10511 1.51435 1.15530 1.19696 0.89781 1.35822 0.97707 0.88109 1.25263 0.97779 0.96982 0.97810 1.69607 1.20812 1.41059 1.22631 0.85879 0.80999 0.77839 0.79714 1.20353 1.20860 1.19462 1.21755 1.01568 0.88718 0.96231 1.21543 0.87668 0.98184 0.92773 1.22259 0.94933 0.99430 0.98637 0.92875 0.92634 0.92591 0.91188 0.91544 0.90793 0.91282 0.92014 0.90113 0.90659 0.90427 0.92095 0.91808 0.89629 0.89419 0.77444 0.91822 0.90952 0.92033 0.90512 0.89909 0.89234 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.13 37.16 0.34 -0.85 16 2 C -0.10 -0.92 3.46 -88.90 -0.31 -1.22 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.12 -0.95 6.33 -24.74 -0.16 -1.11 16 5 C -0.11 -1.00 5.08 -25.07 -0.13 -1.12 16 6 C -0.11 -1.34 2.39 -90.66 -0.22 -1.56 16 7 H 0.10 1.14 7.39 -51.93 -0.38 0.75 16 8 C 0.52 7.92 6.88 -10.99 -0.08 7.84 16 9 O -0.54 -10.31 14.64 5.55 0.08 -10.23 16 10 N -0.60 -8.14 2.18 -172.38 -0.38 -8.52 16 11 C 0.11 1.11 4.87 -2.98 -0.01 1.09 16 12 C -0.13 -1.46 5.80 -27.16 -0.16 -1.62 16 13 C 0.07 1.16 4.12 -5.08 -0.02 1.14 16 14 N -0.54 -8.66 3.99 -240.91 -0.96 -9.62 16 15 C 0.05 0.86 5.58 -4.98 -0.03 0.83 16 16 C 0.41 9.45 7.22 -10.99 -0.08 9.37 16 17 O -0.59 -15.69 12.20 5.54 0.07 -15.63 16 18 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 19 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 22 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 23 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 C 0.05 0.81 4.93 -5.71 -0.03 0.78 16 28 C 0.12 1.72 5.52 -3.95 -0.02 1.70 16 29 C -0.11 -1.39 5.98 -25.56 -0.15 -1.54 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 33 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.52 6.80 -51.93 -0.35 0.17 16 36 H 0.07 0.64 7.85 -51.93 -0.41 0.24 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.75 4.75 -51.93 -0.25 0.50 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.84 7.98 -51.93 -0.41 0.43 16 41 H 0.06 1.16 6.21 -51.93 -0.32 0.84 16 42 H 0.06 1.03 7.57 -51.93 -0.39 0.63 16 43 H 0.09 1.38 7.92 -51.93 -0.41 0.97 16 44 H 0.09 1.39 7.94 -51.93 -0.41 0.98 16 45 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 47 H 0.07 1.18 7.85 -51.93 -0.41 0.77 16 48 H 0.06 1.37 6.22 -51.92 -0.32 1.04 16 49 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 50 H 0.08 1.23 7.28 -51.93 -0.38 0.85 16 51 H 0.09 1.33 6.39 -51.93 -0.33 1.00 16 52 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -32.76 391.13 -9.76 -42.53 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -8.82 Total: 11.75 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.29 Total: 5.68 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.67 Total: -56.33 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: 0.15 Total: -25.86 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.76 -9.76 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197338524.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.786 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds