Wall clock time and date at job start Tue Mar 31 2020 21:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.44133 * 2 1 4 4 C 1.54896 * 110.48426 * 122.54212 * 2 1 3 5 5 C 1.54885 * 102.74944 * 156.62019 * 4 2 1 6 6 C 1.54267 * 104.19683 * 322.05669 * 5 4 2 7 7 H 1.08998 * 110.03138 * 264.27706 * 6 5 4 8 8 C 1.50693 * 110.03368 * 142.89534 * 6 5 4 9 9 O 1.21284 * 119.99958 * 242.09567 * 8 6 5 10 10 N 1.34779 * 120.00244 * 62.09121 * 8 6 5 11 11 C 1.47620 * 118.74197 * 0.02562 * 10 8 6 12 12 C 1.53854 * 111.36717 * 138.28202 * 11 10 8 13 13 C 1.51266 * 109.57186 * 320.03883 * 12 11 10 14 14 N 1.46199 * 109.15879 * 92.34347 * 13 12 11 15 15 C 1.46902 * 111.00200 * 144.72101 * 14 13 12 16 16 C 1.50696 * 109.47141 * 64.75645 * 15 14 13 17 17 O 1.21296 * 119.99958 * 354.38249 * 16 15 14 18 18 N 1.34777 * 120.00350 * 174.37867 * 16 15 14 19 19 C 1.37100 * 120.00297 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99783 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99667 * 180.02562 * 19 18 16 22 22 N 1.31402 * 120.00290 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99554 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47073 * 89.99803 * 23 21 19 25 25 H 1.48504 * 109.47162 * 209.99605 * 23 21 19 26 26 H 1.48500 * 109.47006 * 329.99874 * 23 21 19 27 27 C 1.41445 * 116.34882 * 272.92831 * 14 13 12 28 28 C 1.44879 * 118.74818 * 180.02562 * 10 8 6 29 29 C 1.53874 * 106.63933 * 23.58782 * 6 5 4 30 30 H 1.09002 * 109.46909 * 298.91842 * 1 2 3 31 31 H 1.09004 * 109.46499 * 58.90907 * 1 2 3 32 32 H 1.08999 * 109.47317 * 178.91236 * 1 2 3 33 33 H 1.08999 * 110.75296 * 38.30256 * 4 2 1 34 34 H 1.09001 * 110.91185 * 275.01128 * 4 2 1 35 35 H 1.09004 * 110.48256 * 203.38071 * 5 4 2 36 36 H 1.09001 * 110.60059 * 80.78964 * 5 4 2 37 37 H 1.08999 * 109.10899 * 258.77978 * 11 10 8 38 38 H 1.08993 * 109.11806 * 17.84167 * 11 10 8 39 39 H 1.08995 * 109.55683 * 199.95406 * 12 11 10 40 40 H 1.09000 * 109.38643 * 80.01931 * 12 11 10 41 41 H 1.08994 * 109.53840 * 332.41901 * 13 12 11 42 42 H 1.09002 * 109.53349 * 212.26296 * 13 12 11 43 43 H 1.08996 * 109.47131 * 184.75666 * 15 14 13 44 44 H 1.09003 * 109.47271 * 304.75824 * 15 14 13 45 45 H 0.97007 * 119.99602 * 0.02562 * 18 16 15 46 46 H 0.97006 * 119.99923 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.39038 * 183.64172 * 27 14 13 48 48 H 1.09007 * 109.38317 * 303.42967 * 27 14 13 49 49 H 1.09003 * 109.43373 * 149.66248 * 28 10 8 50 50 H 1.08997 * 109.43724 * 29.78585 * 28 10 8 51 51 H 1.08992 * 110.03349 * 119.30688 * 29 6 5 52 52 H 1.09004 * 110.03274 * 240.74047 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9107 1.0213 0.0000 4 6 2.0721 -0.7805 1.2232 5 6 3.4907 -1.1971 0.7616 6 6 3.3166 -1.5415 -0.7320 7 1 3.1701 -2.6148 -0.8531 8 6 4.5281 -1.0954 -1.5093 9 8 4.4155 -0.2592 -2.3805 10 7 5.7368 -1.6255 -1.2362 11 6 5.8419 -2.6416 -0.1705 12 6 6.7768 -3.7918 -0.5829 13 6 6.5490 -4.1327 -2.0389 14 7 7.4815 -3.3655 -2.8630 15 6 7.9208 -4.1465 -4.0271 16 6 6.7417 -4.4141 -4.9265 17 8 5.6270 -4.0850 -4.5792 18 7 6.9255 -5.0190 -6.1168 19 6 5.8528 -5.2619 -6.9352 20 1 4.8604 -4.9682 -6.6263 21 6 6.0423 -5.8860 -8.1621 22 7 7.2498 -6.2429 -8.5381 23 14 4.5808 -6.2164 -9.2776 24 1 4.3747 -5.0554 -10.1803 25 1 4.8416 -7.4332 -10.0879 26 1 3.3643 -6.4232 -8.4513 27 6 7.0594 -2.0722 -3.2503 28 6 6.8832 -1.1765 -1.9998 29 6 2.0698 -0.7813 -1.2171 30 1 -0.3633 0.4970 0.8995 31 1 -0.3632 0.5307 -0.8801 32 1 -0.3634 -1.0275 -0.0195 33 1 1.4580 -1.6583 1.4243 34 1 2.1249 -0.1383 2.1023 35 1 3.8314 -2.0707 1.3174 36 1 4.1916 -0.3713 0.8834 37 1 6.2310 -2.1721 0.7330 38 1 4.8510 -3.0454 0.0368 39 1 6.5703 -4.6680 0.0316 40 1 7.8129 -3.4849 -0.4399 41 1 5.5254 -3.8811 -2.3164 42 1 6.7171 -5.1984 -2.1944 43 1 8.6769 -3.5857 -4.5765 44 1 8.3435 -5.0933 -3.6909 45 1 7.8169 -5.2824 -6.3944 46 1 7.3821 -6.6783 -9.3948 47 1 7.8064 -1.6301 -3.9095 48 1 6.1086 -2.1450 -3.7783 49 1 7.7781 -1.2381 -1.3805 50 1 6.7291 -0.1436 -2.3119 51 1 2.3410 -0.0897 -2.0146 52 1 1.3178 -1.4857 -1.5728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197338524.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:13 Heat of formation + Delta-G solvation = -95.418248 kcal Electronic energy + Delta-G solvation = -31132.421467 eV Core-core repulsion = 27130.351703 eV Total energy + Delta-G solvation = -4002.069764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.84334 -40.70140 -39.02624 -38.17556 -36.42851 -35.68453 -33.62108 -33.36214 -32.58778 -30.48254 -29.75896 -28.01437 -27.16020 -26.38214 -25.38882 -23.74659 -21.96772 -21.64968 -21.00787 -20.91195 -19.92296 -19.55032 -18.49370 -18.01704 -17.29498 -16.83379 -16.61858 -16.51104 -16.40783 -15.93732 -15.65231 -15.53167 -15.29497 -15.10580 -14.62989 -14.54675 -14.34067 -13.99655 -13.77823 -13.62898 -13.33138 -13.18589 -13.01769 -12.87822 -12.68068 -12.65621 -12.49959 -12.43480 -12.22990 -12.18911 -12.12441 -11.84062 -11.79126 -11.65346 -11.62543 -11.52060 -11.50537 -11.26779 -10.85515 -10.68496 -10.05860 -9.61495 -9.05829 -8.51168 -6.01312 1.30890 1.34883 1.47336 1.62284 1.98988 2.09426 2.24230 2.95733 3.14542 3.23309 3.42210 3.56301 3.69217 3.86422 3.99878 4.02732 4.21296 4.23210 4.30652 4.31943 4.37723 4.44348 4.49717 4.52157 4.55606 4.56864 4.63564 4.69143 4.72179 4.74514 4.80154 4.90445 4.93395 4.95948 5.02246 5.06720 5.10587 5.14740 5.21308 5.25442 5.32847 5.33894 5.37092 5.43857 5.53910 5.72845 5.88732 6.05694 6.30120 6.46616 6.54370 7.07066 7.20862 7.50607 8.06676 8.64308 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003062 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.999177 B = 9141.607228 C =10610.679801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.064 0.936 4 C -0.111 4.111 5 C -0.105 4.105 6 C -0.110 4.110 7 H 0.099 0.901 8 C 0.505 3.495 9 O -0.591 6.591 10 N -0.601 5.601 11 C 0.102 3.898 12 C -0.122 4.122 13 C 0.073 3.927 14 N -0.515 5.515 15 C 0.056 3.944 16 C 0.405 3.595 17 O -0.628 6.628 18 N -0.571 5.571 19 C -0.334 4.334 20 H 0.071 0.929 21 C -0.010 4.010 22 N -0.917 5.917 23 Si 0.989 3.011 24 H -0.273 1.273 25 H -0.265 1.265 26 H -0.275 1.275 27 C 0.052 3.948 28 C 0.129 3.871 29 C -0.120 4.120 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.019 0.981 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.115 0.885 45 H 0.397 0.603 46 H 0.279 0.721 47 H 0.077 0.923 48 H 0.002 0.998 49 H 0.111 0.889 50 H 0.069 0.931 51 H 0.051 0.949 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.924 6.877 23.955 24.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.132 4.132 7 H 0.117 0.883 8 C 0.294 3.706 9 O -0.472 6.472 10 N -0.332 5.332 11 C -0.019 4.019 12 C -0.160 4.160 13 C -0.054 4.054 14 N -0.237 5.237 15 C -0.075 4.075 16 C 0.191 3.809 17 O -0.515 6.515 18 N -0.208 5.208 19 C -0.464 4.464 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.558 5.558 23 Si 0.813 3.187 24 H -0.199 1.199 25 H -0.190 1.190 26 H -0.200 1.200 27 C -0.078 4.078 28 C 0.006 3.994 29 C -0.158 4.158 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.230 0.770 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.020 0.980 49 H 0.129 0.871 50 H 0.087 0.913 51 H 0.070 0.930 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.243 7.502 23.868 25.120 hybrid contribution -0.904 -0.470 -2.448 2.652 sum -3.147 7.032 21.420 22.763 Atomic orbital electron populations 1.21783 0.93988 1.02162 1.01928 1.21969 0.96295 0.98733 0.94292 0.91755 1.22574 0.94916 1.00405 0.96971 1.22466 0.98588 1.02625 0.90565 1.21968 0.92016 1.01608 0.97576 0.88335 1.21305 0.85943 0.80620 0.82697 1.90625 1.85836 1.35917 1.34843 1.47889 1.07122 1.40983 1.37205 1.22459 1.02029 0.88398 0.89014 1.21906 1.01377 0.98775 0.93959 1.21481 0.93850 0.96227 0.93860 1.59123 1.43430 1.02413 1.18758 1.22195 0.94116 1.00804 0.90417 1.22289 0.92348 0.82304 0.83914 1.90504 1.27935 1.57593 1.75497 1.42092 1.10028 1.52510 1.16193 1.19573 0.89560 1.37925 0.99371 0.91108 1.25993 1.00487 0.96151 0.98404 1.69657 1.21990 1.40939 1.23194 0.84995 0.77621 0.78311 0.77806 1.19873 1.18971 1.20044 1.21681 0.98577 0.90032 0.97546 1.21434 0.89271 0.96632 0.92108 1.22261 0.95417 0.99052 0.99038 0.91136 0.93579 0.92185 0.89960 0.89625 0.87923 0.91588 0.88242 0.89030 0.87651 0.89145 0.96263 0.92480 0.87619 0.86679 0.76953 0.91177 0.90471 0.98004 0.87072 0.91271 0.93006 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.13 71.98 0.66 -1.56 16 2 C -0.09 -1.75 3.46 -9.68 -0.03 -1.78 16 3 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.11 -1.46 6.33 31.89 0.20 -1.26 16 5 C -0.10 -1.56 5.08 31.67 0.16 -1.40 16 6 C -0.11 -2.63 2.39 -10.82 -0.03 -2.65 16 7 H 0.10 2.29 7.39 -2.39 -0.02 2.28 16 8 C 0.50 16.06 6.88 87.65 0.60 16.66 16 9 O -0.59 -24.67 14.64 -3.04 -0.04 -24.71 16 10 N -0.60 -15.86 2.18 -817.69 -1.79 -17.65 16 11 C 0.10 1.75 4.87 86.45 0.42 2.17 16 12 C -0.12 -2.23 5.80 30.32 0.18 -2.06 16 13 C 0.07 2.22 4.12 85.87 0.35 2.58 16 14 N -0.52 -16.24 3.99 -916.10 -3.66 -19.89 16 15 C 0.06 1.93 5.58 85.56 0.48 2.41 16 16 C 0.40 19.50 7.22 87.66 0.63 20.14 16 17 O -0.63 -35.23 12.20 -3.08 -0.04 -35.26 16 18 N -0.57 -30.01 5.29 -306.98 -1.62 -31.64 16 19 C -0.33 -19.61 9.68 84.04 0.81 -18.80 16 20 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 22 N -0.92 -50.36 13.05 21.66 0.28 -50.07 16 23 Si 0.99 44.34 29.55 68.60 2.03 46.37 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 C 0.05 1.82 4.93 87.92 0.43 2.26 16 28 C 0.13 3.60 5.52 87.31 0.48 4.08 16 29 C -0.12 -3.07 5.98 31.36 0.19 -2.89 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.89 8.11 -2.39 -0.02 0.87 16 33 H 0.08 0.92 8.06 -2.39 -0.02 0.90 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 0.97 6.80 -2.38 -0.02 0.95 16 36 H 0.07 1.06 7.85 -2.39 -0.02 1.04 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.09 1.40 4.75 -2.39 -0.01 1.39 16 39 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 1.51 7.98 -2.39 -0.02 1.49 16 41 H 0.02 0.75 6.21 -2.39 -0.01 0.73 16 42 H 0.06 1.78 7.57 -2.39 -0.02 1.76 16 43 H 0.11 3.27 7.92 -2.39 -0.02 3.25 16 44 H 0.12 3.41 7.94 -2.39 -0.02 3.39 16 45 H 0.40 19.72 7.90 -92.70 -0.73 18.99 16 46 H 0.28 14.28 8.31 -92.70 -0.77 13.51 16 47 H 0.08 2.56 7.85 -2.39 -0.02 2.54 16 48 H 0.00 0.08 6.22 -2.38 -0.01 0.07 16 49 H 0.11 2.35 8.11 -2.39 -0.02 2.33 16 50 H 0.07 2.13 7.28 -2.39 -0.02 2.11 16 51 H 0.05 1.72 6.39 -2.39 -0.02 1.71 16 52 H 0.07 1.65 7.82 -2.38 -0.02 1.63 16 Total: -1.00 -78.28 391.13 1.35 -76.93 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: 0.18 Total: 38.12 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: 6.01 Total: 17.81 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -6.78 Total: -119.25 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -0.08 Total: -59.98 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -78.28 1.35 -76.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197338524.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.488 kcal (2) G-P(sol) polarization free energy of solvation -78.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds