Wall clock time and date at job start Tue Mar 31 2020 22:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 115.55168 * 2 1 4 4 C 1.53077 * 117.51533 * 145.71954 * 2 1 3 5 5 C 1.52999 * 117.50113 * 214.32902 * 2 1 3 6 6 H 1.09002 * 117.50071 * 0.02562 * 5 2 1 7 7 C 1.50702 * 117.49956 * 144.99440 * 5 2 1 8 8 O 1.21283 * 120.00262 * 359.91859 * 7 5 2 9 9 N 1.34777 * 119.99928 * 179.63765 * 7 5 2 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 5 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 C 1.50694 * 109.47460 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00142 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00100 * 180.02562 * 12 11 10 15 15 C 1.46921 * 120.63090 * 359.71556 * 14 12 11 16 16 C 1.53630 * 108.54017 * 126.37278 * 15 14 12 17 17 C 1.53037 * 109.24174 * 54.85899 * 16 15 14 18 18 C 1.52998 * 109.45591 * 178.48809 * 17 16 15 19 19 N 1.46496 * 109.47388 * 295.06622 * 18 17 16 20 20 C 1.36943 * 120.00056 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99661 * 0.02562 * 20 19 18 22 22 C 1.38806 * 120.00149 * 179.97438 * 20 19 18 23 23 N 1.31626 * 119.99962 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00444 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46973 * 59.99984 * 24 22 20 26 26 H 1.48493 * 109.47566 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47010 * 300.00742 * 24 22 20 28 28 C 1.53036 * 109.53626 * 298.50940 * 17 16 15 29 29 C 1.46925 * 120.62929 * 180.02562 * 14 12 11 30 30 H 1.08998 * 109.47344 * 205.67169 * 1 2 3 31 31 H 1.09005 * 109.47165 * 325.66880 * 1 2 3 32 32 H 1.08997 * 109.47184 * 85.66916 * 1 2 3 33 33 H 1.08996 * 117.49248 * 359.97438 * 4 2 1 34 34 H 1.08999 * 117.51262 * 214.95508 * 4 2 1 35 35 H 0.97000 * 120.00317 * 0.28382 * 9 7 5 36 36 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 37 37 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 38 38 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 39 39 H 1.09011 * 109.47062 * 60.00275 * 11 10 9 40 40 H 1.08994 * 109.59066 * 246.20385 * 15 14 12 41 41 H 1.08996 * 109.58631 * 6.63554 * 15 14 12 42 42 H 1.09003 * 109.63496 * 294.86569 * 16 15 14 43 43 H 1.09007 * 109.45200 * 174.74534 * 16 15 14 44 44 H 1.08999 * 109.44758 * 58.52507 * 17 16 15 45 45 H 1.09004 * 109.47133 * 55.07206 * 18 17 16 46 46 H 1.08999 * 109.47007 * 175.06597 * 18 17 16 47 47 H 0.96998 * 120.00505 * 0.02562 * 19 18 17 48 48 H 0.96995 * 119.99988 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.49971 * 301.41241 * 28 17 16 50 50 H 1.09003 * 109.52484 * 181.33752 * 28 17 16 51 51 H 1.09001 * 109.59335 * 353.37295 * 29 14 12 52 52 H 1.09001 * 109.58947 * 113.65583 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2371 -1.1218 0.7647 5 6 2.2364 -1.1207 -0.7653 6 1 1.6113 -1.8578 -1.2692 7 6 3.5290 -0.7804 -1.4615 8 8 3.9705 0.3477 -1.4032 9 7 4.1972 -1.7311 -2.1443 10 6 5.4567 -1.4019 -2.8161 11 6 6.0047 -2.6492 -3.5123 12 6 7.3007 -2.3106 -4.2028 13 8 7.7424 -1.1826 -4.1443 14 7 7.9684 -3.2611 -4.8863 15 6 7.4487 -4.6332 -4.9621 16 6 7.3582 -5.0403 -6.4407 17 6 8.7255 -4.8492 -7.1010 18 6 8.6505 -5.2889 -8.5645 19 7 8.3851 -6.7282 -8.6291 20 6 8.2749 -7.3503 -9.8440 21 1 8.3840 -6.7799 -10.7546 22 6 8.0239 -8.7142 -9.9052 23 7 7.8914 -9.4094 -8.7954 24 14 7.8742 -9.5630 -11.5624 25 1 9.1408 -9.3970 -12.3197 26 1 7.6064 -11.0089 -11.3557 27 1 6.7560 -8.9576 -12.3295 28 6 9.1254 -3.3736 -7.0318 29 6 9.2334 -2.9463 -5.5642 30 1 -0.3634 -0.9262 0.4452 31 1 -0.3634 0.8487 0.5796 32 1 -0.3633 0.0776 -1.0247 33 1 1.6121 -1.8594 1.2680 34 1 3.1725 -0.8764 1.2677 35 1 3.8441 -2.6334 -2.1910 36 1 5.2806 -0.6210 -3.5558 37 1 6.1794 -1.0489 -2.0803 38 1 6.1807 -3.4304 -2.7729 39 1 5.2818 -3.0016 -4.2482 40 1 8.1223 -5.3087 -4.4348 41 1 6.4582 -4.6743 -4.5091 42 1 6.6195 -4.4191 -6.9471 43 1 7.0631 -6.0873 -6.5115 44 1 9.4683 -5.4518 -6.5784 45 1 7.8474 -4.7485 -9.0656 46 1 9.5977 -5.0717 -9.0581 47 1 8.2867 -7.2404 -7.8113 48 1 7.7164 -10.3624 -8.8381 49 1 8.3702 -2.7680 -7.5326 50 1 10.0883 -3.2337 -7.5231 51 1 9.4210 -1.8740 -5.5086 52 1 10.0497 -3.4854 -5.0834 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205418806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:38 Heat of formation + Delta-G solvation = -77.121405 kcal Electronic energy + Delta-G solvation = -28536.616248 eV Core-core repulsion = 24535.339894 eV Total energy + Delta-G solvation = -4001.276353 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.42612 -40.94755 -39.01542 -37.88250 -36.56571 -36.22016 -34.50763 -32.90144 -31.96393 -31.55383 -29.57924 -28.25952 -26.36768 -25.30072 -24.31535 -23.89023 -22.89065 -21.88896 -21.48011 -21.01829 -19.89319 -19.14705 -18.45119 -18.26637 -17.13533 -16.91558 -16.72497 -16.54427 -16.18338 -15.65881 -15.57078 -15.35413 -15.31252 -15.17287 -14.73720 -14.67224 -14.21004 -14.10695 -14.03727 -13.86774 -13.70209 -13.53358 -13.14784 -12.92102 -12.91531 -12.82181 -12.71480 -12.54196 -12.31466 -12.22568 -12.14724 -11.94320 -11.67074 -11.49867 -11.35767 -11.30812 -11.10410 -10.95870 -10.89076 -10.75929 -10.20103 -9.66513 -8.96463 -7.93849 -5.21349 1.43626 1.48723 1.50540 1.56279 1.56801 1.77881 2.26646 2.57228 2.85133 3.39491 3.45843 3.68530 3.74689 3.77739 3.79065 3.85842 3.88162 3.95127 4.02354 4.14550 4.22189 4.30692 4.35781 4.42618 4.42868 4.53222 4.61008 4.74240 4.74854 4.79109 4.83128 4.85619 4.88049 4.90964 4.95454 4.97996 5.07047 5.07589 5.08599 5.18960 5.22063 5.31284 5.34101 5.43355 5.48776 5.55648 5.59100 6.29211 6.37503 6.51521 7.10243 7.21581 7.36290 8.12282 8.37211 9.29018 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.001751 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.165961 B =15987.076978 C =17346.235612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.136 4.136 3 H 0.088 0.912 4 C -0.135 4.135 5 C -0.192 4.192 6 H 0.155 0.845 7 C 0.534 3.466 8 O -0.592 6.592 9 N -0.710 5.710 10 C 0.142 3.858 11 C -0.141 4.141 12 C 0.514 3.486 13 O -0.589 6.589 14 N -0.606 5.606 15 C 0.110 3.890 16 C -0.121 4.121 17 C -0.085 4.085 18 C 0.156 3.844 19 N -0.740 5.740 20 C -0.249 4.249 21 H 0.070 0.930 22 C -0.070 4.070 23 N -0.965 5.965 24 Si 0.969 3.031 25 H -0.281 1.281 26 H -0.294 1.294 27 H -0.280 1.280 28 C -0.115 4.115 29 C 0.114 3.886 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.087 0.913 35 H 0.421 0.579 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.084 0.916 41 H 0.117 0.883 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.013 0.987 46 H 0.014 0.986 47 H 0.377 0.623 48 H 0.252 0.748 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.080 0.920 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.745 12.738 19.777 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.155 4.155 3 H 0.107 0.893 4 C -0.172 4.172 5 C -0.212 4.212 6 H 0.172 0.828 7 C 0.322 3.678 8 O -0.473 6.473 9 N -0.363 5.363 10 C 0.017 3.983 11 C -0.181 4.181 12 C 0.303 3.697 13 O -0.470 6.470 14 N -0.338 5.338 15 C -0.011 4.011 16 C -0.159 4.159 17 C -0.103 4.103 18 C 0.030 3.970 19 N -0.383 5.383 20 C -0.381 4.381 21 H 0.088 0.912 22 C -0.263 4.263 23 N -0.615 5.615 24 Si 0.799 3.201 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.206 1.206 28 C -0.154 4.154 29 C -0.009 4.009 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.105 0.895 35 H 0.260 0.740 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.031 0.969 46 H 0.032 0.968 47 H 0.210 0.790 48 H 0.061 0.939 49 H 0.078 0.922 50 H 0.101 0.899 51 H 0.099 0.901 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.179 14.091 19.638 26.631 hybrid contribution 0.255 -1.033 -1.173 1.583 sum -10.924 13.059 18.465 25.116 Atomic orbital electron populations 1.21393 0.90335 1.03349 1.02525 1.22419 0.96623 0.94137 1.02278 0.89338 1.23212 1.02833 1.01332 0.89852 1.22381 0.96220 1.06198 0.96446 0.82773 1.20347 0.85541 0.84059 0.77868 1.90703 1.70140 1.23396 1.63036 1.45741 1.23553 1.14194 1.52803 1.20788 0.85083 0.96604 0.95831 1.21819 0.94572 0.99464 1.02204 1.20904 0.86371 0.83958 0.78420 1.90712 1.70286 1.22653 1.63300 1.48236 1.23653 1.10927 1.51009 1.22065 1.01748 0.80970 0.96352 1.21907 0.96671 1.01834 0.95495 1.21190 0.97962 0.96189 0.95001 1.20814 0.96669 0.84174 0.95388 1.42508 1.86425 1.04369 1.05025 1.19568 1.39797 0.91718 0.86999 0.91236 1.25472 1.03441 0.97203 1.00166 1.69776 1.57519 1.07034 1.27177 0.85278 0.77994 0.77152 0.79717 1.20712 1.21959 1.20611 1.21808 1.02555 0.94909 0.96123 1.21590 0.85574 1.01799 0.91925 0.90534 0.91403 0.91931 0.84840 0.89493 0.74049 0.93286 0.92891 0.84726 0.85371 0.89822 0.86513 0.92170 0.91384 0.91204 0.96878 0.96758 0.79002 0.93947 0.92225 0.89859 0.90125 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.19 71.98 0.73 -0.22 16 2 C -0.14 -1.77 5.92 -10.77 -0.06 -1.84 16 3 H 0.09 1.67 7.67 -2.38 -0.02 1.65 16 4 C -0.14 -1.32 9.88 30.62 0.30 -1.02 16 5 C -0.19 -2.28 5.91 -11.54 -0.07 -2.35 16 6 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 7 C 0.53 10.52 7.61 87.66 0.67 11.18 16 8 O -0.59 -18.04 16.26 -3.04 -0.05 -18.09 16 9 N -0.71 -9.98 5.56 -463.06 -2.57 -12.55 16 10 C 0.14 2.69 4.96 86.38 0.43 3.12 16 11 C -0.14 -1.84 4.16 29.85 0.12 -1.71 16 12 C 0.51 11.40 7.70 87.66 0.67 12.08 16 13 O -0.59 -18.41 15.40 -3.04 -0.05 -18.46 16 14 N -0.61 -12.42 2.97 -818.01 -2.43 -14.85 16 15 C 0.11 1.89 6.37 86.51 0.55 2.44 16 16 C -0.12 -3.02 5.26 30.82 0.16 -2.86 16 17 C -0.08 -2.39 2.19 -10.77 -0.02 -2.42 16 18 C 0.16 5.95 5.65 86.38 0.49 6.44 16 19 N -0.74 -35.88 5.32 -343.46 -1.83 -37.71 16 20 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 21 H 0.07 3.71 7.83 -2.91 -0.02 3.68 16 22 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 23 N -0.96 -56.69 13.06 21.65 0.28 -56.41 16 24 Si 0.97 45.08 29.55 68.60 2.03 47.11 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 C -0.12 -2.74 5.36 30.68 0.16 -2.57 16 29 C 0.11 2.50 6.43 86.38 0.56 3.06 16 30 H 0.08 0.36 7.90 -2.39 -0.02 0.34 16 31 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.13 0.57 8.05 -2.39 -0.02 0.55 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.42 2.45 8.47 -92.71 -0.79 1.66 16 36 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 37 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 38 H 0.13 0.93 7.93 -2.39 -0.02 0.91 16 39 H 0.13 1.10 7.70 -2.38 -0.02 1.09 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.12 1.22 5.93 -2.39 -0.01 1.21 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 2.03 7.15 -2.38 -0.02 2.01 16 44 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 46 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.38 18.98 6.84 -92.71 -0.63 18.34 16 48 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 49 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.08 1.98 7.01 -2.39 -0.02 1.96 16 52 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -78.42 417.21 0.89 -77.53 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: -0.51 Total: 26.34 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 6.00 Total: 7.09 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -6.54 Total: -121.52 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.10 Total: -36.54 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -78.42 0.89 -77.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205418806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.410 kcal (2) G-P(sol) polarization free energy of solvation -78.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds