Wall clock time and date at job start Tue Mar 31 2020 22:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 115.54521 * 2 1 4 4 C 1.53071 * 117.51474 * 145.71745 * 2 1 3 5 5 C 1.52999 * 117.50011 * 214.32885 * 2 1 3 6 6 H 1.08996 * 117.49922 * 359.97438 * 5 2 1 7 7 C 1.52999 * 117.49569 * 144.99954 * 5 2 1 8 8 C 1.50706 * 109.46573 * 184.91069 * 7 5 2 9 9 O 1.21274 * 120.00042 * 359.72068 * 8 7 5 10 10 N 1.34777 * 119.99766 * 179.97438 * 8 7 5 11 11 C 1.46496 * 120.00266 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47425 * 180.02562 * 11 10 8 13 13 C 1.53125 * 109.51958 * 294.87341 * 12 11 10 14 14 C 1.53039 * 109.27318 * 182.50430 * 13 12 11 15 15 N 1.46846 * 109.57715 * 59.08330 * 14 13 12 16 16 C 1.46905 * 111.00344 * 174.19284 * 15 14 13 17 17 C 1.50706 * 109.46548 * 294.21361 * 16 15 14 18 18 O 1.21289 * 120.00435 * 359.97438 * 17 16 15 19 19 N 1.34779 * 119.99067 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99454 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99917 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99931 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00001 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47148 * 59.99545 * 24 22 20 26 26 H 1.48493 * 109.47169 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46968 * 299.99859 * 24 22 20 28 28 C 1.46847 * 111.20215 * 298.29517 * 15 14 13 29 29 C 1.53035 * 109.52585 * 61.73361 * 28 15 14 30 30 H 1.09005 * 109.46950 * 205.66905 * 1 2 3 31 31 H 1.08997 * 109.47293 * 325.67478 * 1 2 3 32 32 H 1.09007 * 109.46927 * 85.67300 * 1 2 3 33 33 H 1.09002 * 117.49196 * 359.97438 * 4 2 1 34 34 H 1.08997 * 117.51298 * 214.95704 * 4 2 1 35 35 H 1.09000 * 109.47486 * 64.91135 * 7 5 2 36 36 H 1.09001 * 109.47362 * 304.90412 * 7 5 2 37 37 H 0.96999 * 120.00043 * 0.02562 * 10 8 7 38 38 H 1.09004 * 109.47212 * 300.00463 * 11 10 8 39 39 H 1.09000 * 109.46684 * 60.00307 * 11 10 8 40 40 H 1.08991 * 109.52466 * 54.99966 * 12 11 10 41 41 H 1.09000 * 109.50161 * 302.38241 * 13 12 11 42 42 H 1.09002 * 109.50089 * 62.50110 * 13 12 11 43 43 H 1.09000 * 109.41072 * 299.07209 * 14 13 12 44 44 H 1.08999 * 109.45336 * 179.12791 * 14 13 12 45 45 H 1.08996 * 109.47001 * 54.21127 * 16 15 14 46 46 H 1.08994 * 109.46988 * 174.21250 * 16 15 14 47 47 H 0.96995 * 120.00485 * 0.02562 * 19 17 16 48 48 H 0.96997 * 120.00059 * 180.02562 * 23 22 20 49 49 H 1.09006 * 109.45960 * 301.72234 * 28 15 14 50 50 H 1.08999 * 109.45900 * 181.75298 * 28 15 14 51 51 H 1.09000 * 109.50281 * 180.88557 * 29 28 15 52 52 H 1.09000 * 109.49988 * 60.76345 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2372 -1.1217 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 1.6113 -1.8583 -1.2685 7 6 3.5488 -0.7752 -1.4720 8 6 4.0226 -1.9677 -2.2625 9 8 3.3772 -2.9944 -2.2566 10 7 5.1663 -1.8947 -2.9717 11 6 5.6273 -3.0539 -3.7397 12 6 6.9395 -2.7085 -4.4465 13 6 6.6877 -1.6125 -5.4858 14 6 7.9902 -1.3155 -6.2324 15 7 8.4709 -2.5380 -6.8887 16 6 9.6443 -2.2588 -7.7274 17 6 9.2422 -1.3650 -8.8722 18 8 8.0914 -0.9972 -8.9793 19 7 10.1615 -0.9744 -9.7771 20 6 9.7959 -0.1609 -10.8183 21 1 8.7711 0.1666 -10.9136 22 6 10.7435 0.2414 -11.7516 23 7 11.9902 -0.1575 -11.6359 24 14 10.2452 1.3493 -13.1707 25 1 9.7037 2.6246 -12.6364 26 1 11.4314 1.6320 -14.0180 27 1 9.2043 0.6723 -13.9852 28 6 8.7647 -3.5883 -5.9054 29 6 7.4851 -3.9542 -5.1501 30 1 -0.3633 -0.9263 0.4452 31 1 -0.3634 0.8487 0.5795 32 1 -0.3633 0.0775 -1.0248 33 1 1.6121 -1.8593 1.2680 34 1 3.1725 -0.8763 1.2677 35 1 4.3017 -0.5085 -0.7303 36 1 3.3881 0.0665 -2.1456 37 1 5.6846 -1.0748 -2.9732 38 1 5.7886 -3.8954 -3.0658 39 1 4.8743 -3.3213 -4.4810 40 1 7.6659 -2.3562 -3.7143 41 1 5.9317 -1.9500 -6.1948 42 1 6.3401 -0.7090 -4.9849 43 1 8.7412 -0.9638 -5.5250 44 1 7.8107 -0.5464 -6.9837 45 1 10.4082 -1.7619 -7.1295 46 1 10.0416 -3.1949 -8.1195 47 1 11.0817 -1.2689 -9.6917 48 1 12.6518 0.1236 -12.2871 49 1 9.5121 -3.2260 -5.1994 50 1 9.1479 -4.4698 -6.4193 51 1 7.7068 -4.7227 -4.4095 52 1 6.7420 -4.3296 -5.8537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:37 Heat of formation + Delta-G solvation = -64.862362 kcal Electronic energy + Delta-G solvation = -28571.542476 eV Core-core repulsion = 24570.797715 eV Total energy + Delta-G solvation = -4000.744761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.18949 -39.26579 -38.08927 -37.62446 -35.44202 -33.92598 -32.96607 -31.25488 -30.92262 -30.67187 -28.60888 -27.61503 -25.71572 -24.06016 -23.14089 -22.14227 -21.52298 -20.82882 -20.34293 -19.61989 -19.18368 -17.85721 -17.31794 -16.39673 -15.98548 -15.89912 -15.40700 -15.25110 -14.93550 -14.72183 -14.61387 -14.21624 -13.94403 -13.80724 -13.76109 -13.58266 -13.43819 -12.98804 -12.97092 -12.68551 -12.50381 -12.31118 -12.15632 -11.84568 -11.77517 -11.67461 -11.49955 -11.37472 -11.08517 -11.01609 -10.73198 -10.47856 -10.44588 -10.36012 -10.25365 -10.23313 -10.20748 -9.88744 -9.45623 -9.24797 -8.42103 -7.97357 -7.82149 -6.41711 -3.82524 2.45496 2.92392 3.19666 3.25450 3.29716 3.41911 3.90557 4.00120 4.24275 4.24979 4.38775 4.46823 4.58033 4.72307 4.73285 4.75888 4.91794 5.04599 5.07667 5.12928 5.24117 5.28246 5.30284 5.33061 5.41642 5.43164 5.44247 5.48970 5.51476 5.56254 5.65986 5.66854 5.75352 5.80006 5.84229 5.86970 5.88742 6.00883 6.02437 6.05738 6.17411 6.24365 6.28657 6.44866 6.51358 7.27977 7.32524 7.45826 7.54940 8.02671 8.06463 8.62104 9.18140 9.54770 10.06735 10.75951 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017961 B = 0.001710 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.587933 B =16366.712586 C =17572.086392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.155 4.155 3 H 0.104 0.896 4 C -0.174 4.174 5 C -0.136 4.136 6 H 0.118 0.882 7 C -0.112 4.112 8 C 0.514 3.486 9 O -0.541 6.541 10 N -0.730 5.730 11 C 0.125 3.875 12 C -0.101 4.101 13 C -0.106 4.106 14 C 0.052 3.948 15 N -0.515 5.515 16 C 0.046 3.954 17 C 0.444 3.556 18 O -0.577 6.577 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.056 3.944 29 C -0.106 4.106 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.401 0.599 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.019 0.981 44 H 0.104 0.896 45 H 0.046 0.954 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.028 0.972 50 H 0.075 0.925 51 H 0.066 0.934 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.260 -2.358 23.287 25.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.173 4.173 3 H 0.122 0.878 4 C -0.211 4.211 5 C -0.155 4.155 6 H 0.136 0.864 7 C -0.152 4.152 8 C 0.300 3.700 9 O -0.417 6.417 10 N -0.382 5.382 11 C 0.002 3.998 12 C -0.120 4.120 13 C -0.144 4.144 14 C -0.075 4.075 15 N -0.240 5.240 16 C -0.085 4.085 17 C 0.229 3.771 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.072 4.072 29 C -0.144 4.144 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.235 0.765 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.122 0.878 45 H 0.064 0.936 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.093 0.907 51 H 0.085 0.915 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.703 -2.993 22.776 26.250 hybrid contribution 1.559 1.037 -0.194 1.883 sum -11.144 -1.955 22.582 25.258 Atomic orbital electron populations 1.21363 0.92741 1.01925 1.02010 1.22445 0.95460 0.94489 1.04889 0.87837 1.23219 1.02520 1.01291 0.94109 1.22161 0.97666 1.01884 0.93776 0.86384 1.21233 0.97246 0.96966 0.99708 1.20579 0.80422 0.89754 0.79231 1.90692 1.55654 1.31966 1.63432 1.46068 1.25104 1.17053 1.49960 1.21430 0.95816 0.87940 0.94616 1.21494 0.95717 0.97414 0.97359 1.21611 0.98659 0.97155 0.96979 1.22243 0.94778 0.93157 0.97327 1.61490 1.32177 1.08841 1.21467 1.21834 0.91484 1.00202 0.94973 1.19757 0.86587 0.85554 0.85195 1.90479 1.19156 1.59912 1.76601 1.41868 1.10487 1.44285 1.23474 1.19650 0.96982 1.24246 1.02022 0.87981 1.25251 0.94907 0.98510 0.99228 1.69603 1.01767 1.45651 1.37337 0.85925 0.77747 0.80140 0.80444 1.19960 1.20998 1.19897 1.22080 0.96011 0.95572 0.93572 1.21519 0.97876 0.96183 0.98820 0.92510 0.92176 0.92077 0.88762 0.88944 0.88851 0.88372 0.76495 0.91661 0.91184 0.91053 0.90586 0.92139 0.96254 0.87800 0.93634 0.89393 0.77515 0.91849 0.95366 0.90692 0.91513 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 10.19 37.16 0.38 -0.36 16 2 C -0.15 -1.02 6.13 -90.58 -0.56 -1.57 16 3 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.17 -1.22 9.83 -26.69 -0.26 -1.48 16 5 C -0.14 -1.11 5.13 -90.62 -0.46 -1.57 16 6 H 0.12 1.21 7.31 -51.93 -0.38 0.83 16 7 C -0.11 -0.79 5.98 -27.88 -0.17 -0.95 16 8 C 0.51 5.26 7.83 -10.98 -0.09 5.18 16 9 O -0.54 -7.75 15.57 5.56 0.09 -7.66 16 10 N -0.73 -6.37 5.31 -60.29 -0.32 -6.69 16 11 C 0.13 1.24 5.07 -4.04 -0.02 1.22 16 12 C -0.10 -0.99 2.29 -90.49 -0.21 -1.20 16 13 C -0.11 -1.29 5.23 -26.65 -0.14 -1.43 16 14 C 0.05 0.81 5.10 -3.83 -0.02 0.79 16 15 N -0.52 -8.30 4.40 -236.11 -1.04 -9.34 16 16 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 17 C 0.44 10.31 7.46 -10.98 -0.08 10.23 16 18 O -0.58 -15.24 13.90 5.55 0.08 -15.16 16 19 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 20 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 24 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 C 0.06 0.69 5.46 -3.84 -0.02 0.66 16 29 C -0.11 -1.10 5.38 -26.65 -0.14 -1.25 16 30 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.09 0.65 8.05 -51.93 -0.42 0.23 16 34 H 0.09 0.56 8.03 -51.93 -0.42 0.14 16 35 H 0.09 0.49 7.88 -51.93 -0.41 0.08 16 36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.40 2.59 7.68 -40.82 -0.31 2.28 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.62 7.26 -51.93 -0.38 0.24 16 43 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.10 2.00 5.78 -51.93 -0.30 1.70 16 45 H 0.05 0.74 8.12 -51.93 -0.42 0.31 16 46 H 0.09 1.41 7.99 -51.93 -0.41 0.99 16 47 H 0.39 9.41 7.90 -40.82 -0.32 9.08 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 50 H 0.07 0.87 8.01 -51.93 -0.42 0.45 16 51 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 52 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 415.17 15.07 6.26 6.26 Total: -1.00 -32.70 415.17 -10.54 -43.23 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -9.18 Total: 10.17 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.06 Total: 1.13 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.69 Total: -53.88 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.16 Total: -22.83 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.70 -10.54 -43.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.630 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds