Wall clock time and date at job start Tue Mar 31 2020 22:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08995 * 115.54954 * 2 1 4 4 C 1.53001 * 117.51722 * 214.29622 * 2 1 3 5 5 C 1.52999 * 117.49813 * 145.66765 * 2 1 3 6 6 H 1.08996 * 117.50077 * 0.02647 * 5 2 1 7 7 C 1.52996 * 117.49822 * 215.02663 * 5 2 1 8 8 C 1.50704 * 109.46997 * 175.09083 * 7 5 2 9 9 O 1.21277 * 120.00216 * 359.97438 * 8 7 5 10 10 N 1.34780 * 119.99532 * 180.02562 * 8 7 5 11 11 C 1.46506 * 119.99527 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.46993 * 179.97438 * 11 10 8 13 13 C 1.53120 * 109.52441 * 294.87103 * 12 11 10 14 14 C 1.53041 * 109.27940 * 182.50421 * 13 12 11 15 15 N 1.46844 * 109.57402 * 59.08206 * 14 13 12 16 16 C 1.46904 * 111.00051 * 174.19256 * 15 14 13 17 17 C 1.50699 * 109.47232 * 190.59992 * 16 15 14 18 18 O 1.21295 * 119.99903 * 6.26841 * 17 16 15 19 19 N 1.34772 * 120.00047 * 186.27340 * 17 16 15 20 20 C 1.37102 * 120.00370 * 179.97438 * 19 17 16 21 21 H 1.08009 * 119.99651 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00490 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00135 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99667 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47479 * 89.99854 * 24 22 20 26 26 H 1.48501 * 109.46823 * 210.00194 * 24 22 20 27 27 H 1.48501 * 109.47132 * 329.99483 * 24 22 20 28 28 C 1.46848 * 111.20108 * 298.29106 * 15 14 13 29 29 C 1.53043 * 109.51960 * 61.74070 * 28 15 14 30 30 H 1.08996 * 109.46870 * 274.33293 * 1 2 3 31 31 H 1.09000 * 109.46930 * 34.33032 * 1 2 3 32 32 H 1.09002 * 109.46876 * 154.32902 * 1 2 3 33 33 H 1.08996 * 117.49521 * 145.02757 * 4 2 1 34 34 H 1.09000 * 117.50144 * 0.02562 * 4 2 1 35 35 H 1.09007 * 109.47297 * 295.08652 * 7 5 2 36 36 H 1.08995 * 109.47479 * 55.08405 * 7 5 2 37 37 H 0.97000 * 120.00767 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.47086 * 299.99363 * 11 10 8 39 39 H 1.09000 * 109.46927 * 59.99698 * 11 10 8 40 40 H 1.08997 * 109.52437 * 54.99758 * 12 11 10 41 41 H 1.08999 * 109.50502 * 302.38577 * 13 12 11 42 42 H 1.09006 * 109.50584 * 62.49842 * 13 12 11 43 43 H 1.08999 * 109.40915 * 299.06968 * 14 13 12 44 44 H 1.08990 * 109.45581 * 179.12836 * 14 13 12 45 45 H 1.08996 * 109.47228 * 310.60023 * 16 15 14 46 46 H 1.08998 * 109.46898 * 70.60194 * 16 15 14 47 47 H 0.96996 * 119.99968 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99940 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.46174 * 301.72666 * 28 15 14 50 50 H 1.08999 * 109.45493 * 181.75013 * 28 15 14 51 51 H 1.08998 * 109.50313 * 180.88050 * 29 28 15 52 52 H 1.09000 * 109.53362 * 60.78650 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2370 -1.1210 -0.7646 5 6 2.2365 -1.1207 0.7654 6 1 1.6113 -1.8582 1.2686 7 6 3.5484 -0.7751 1.4726 8 6 4.0223 -1.9676 2.2630 9 8 3.3742 -2.9927 2.2612 10 7 5.1658 -1.8944 2.9727 11 6 5.6261 -3.0534 3.7415 12 6 6.9381 -2.7079 4.4487 13 6 8.0310 -2.4578 3.4058 14 6 9.3549 -2.1742 4.1194 15 7 9.7125 -3.3193 4.9662 16 6 11.0445 -3.1399 5.5592 17 6 11.4860 -4.4295 6.2021 18 8 10.8159 -5.4322 6.0725 19 7 12.6252 -4.4685 6.9211 20 6 13.0266 -5.6415 7.5064 21 1 12.4300 -6.5344 7.3909 22 6 14.2014 -5.6819 8.2472 23 7 14.5864 -6.8064 8.8078 24 14 15.2336 -4.1378 8.4463 25 1 14.7896 -3.3979 9.6549 26 1 16.6628 -4.5133 8.5929 27 1 15.0689 -3.2746 7.2492 28 6 8.7003 -3.5479 6.0053 29 6 7.3572 -3.8740 5.3480 30 1 -0.3633 0.0776 1.0247 31 1 -0.3633 0.8487 -0.5796 32 1 -0.3633 -0.9263 -0.4452 33 1 3.1721 -0.8750 -1.2676 34 1 1.6121 -1.8586 -1.2682 35 1 4.3016 -0.5082 0.7312 36 1 3.3874 0.0666 2.1462 37 1 5.6840 -1.0744 2.9745 38 1 4.8728 -3.3202 4.4828 39 1 5.7874 -3.8952 3.0681 40 1 6.8006 -1.8121 5.0542 41 1 8.1405 -3.3397 2.7747 42 1 7.7575 -1.6008 2.7902 43 1 9.2490 -1.2835 4.7387 44 1 10.1384 -2.0110 3.3795 45 1 11.7542 -2.8605 4.7806 46 1 11.0037 -2.3536 6.3129 47 1 13.1608 -3.6665 7.0251 48 1 15.4063 -6.8345 9.3253 49 1 8.5975 -2.6508 6.6158 50 1 9.0086 -4.3824 6.6351 51 1 6.6026 -4.0282 6.1192 52 1 7.4551 -4.7791 4.7485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:50 Heat of formation + Delta-G solvation = -83.489493 kcal Electronic energy + Delta-G solvation = -28517.432676 eV Core-core repulsion = 24515.880182 eV Total energy + Delta-G solvation = -4001.552494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.05785 -40.60475 -39.42916 -38.50614 -36.54613 -35.86986 -34.06890 -33.69242 -31.74383 -31.54792 -29.70992 -28.46616 -27.14178 -25.47058 -24.16427 -22.99179 -22.33522 -21.46988 -21.24114 -20.99432 -20.54425 -20.17739 -18.06150 -17.73104 -17.12755 -16.88986 -16.68410 -16.51673 -16.29276 -15.71908 -15.50477 -15.30246 -15.29512 -15.16114 -14.93098 -14.46453 -14.33566 -14.12793 -14.02083 -13.88275 -13.63802 -13.51201 -13.22367 -13.10208 -12.96520 -12.82881 -12.57700 -12.40623 -12.31157 -12.18498 -12.09932 -11.97572 -11.70236 -11.57222 -11.37424 -11.25038 -10.99927 -10.84178 -10.54657 -10.33567 -10.21480 -10.05847 -9.11928 -8.40261 -6.01026 1.30349 1.35997 1.45013 1.69739 1.98814 2.21015 2.23843 2.67047 2.88438 3.16240 3.24975 3.68815 3.71627 3.79445 3.81502 3.91047 3.96591 4.14532 4.17071 4.31150 4.35800 4.40763 4.43738 4.45966 4.56274 4.57594 4.59425 4.60396 4.68780 4.73418 4.81363 4.90205 4.93663 4.94467 4.96073 4.98909 5.01400 5.10077 5.21254 5.22796 5.25291 5.32509 5.42819 5.49381 5.53515 5.56142 5.93208 6.09586 6.32420 6.61674 6.62107 6.90518 7.32502 7.42233 8.00658 8.77663 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.042786 B = 0.001548 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.265881 B =18085.047566 C =18404.617567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.140 4.140 3 H 0.123 0.877 4 C -0.181 4.181 5 C -0.155 4.155 6 H 0.087 0.913 7 C -0.100 4.100 8 C 0.507 3.493 9 O -0.592 6.592 10 N -0.715 5.715 11 C 0.131 3.869 12 C -0.084 4.084 13 C -0.105 4.105 14 C 0.055 3.945 15 N -0.542 5.542 16 C 0.056 3.944 17 C 0.449 3.551 18 O -0.607 6.607 19 N -0.593 5.593 20 C -0.328 4.328 21 H 0.053 0.947 22 C -0.015 4.015 23 N -0.937 5.937 24 Si 0.965 3.035 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.230 1.230 28 C 0.059 3.941 29 C -0.103 4.103 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.417 0.583 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.099 0.901 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.120 0.880 46 H 0.078 0.922 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.043 0.957 50 H 0.048 0.952 51 H 0.073 0.927 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.955 26.052 -16.124 36.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.158 4.158 3 H 0.141 0.859 4 C -0.218 4.218 5 C -0.174 4.174 6 H 0.105 0.895 7 C -0.139 4.139 8 C 0.295 3.705 9 O -0.472 6.472 10 N -0.368 5.368 11 C 0.007 3.993 12 C -0.102 4.102 13 C -0.143 4.143 14 C -0.071 4.071 15 N -0.268 5.268 16 C -0.075 4.075 17 C 0.237 3.763 18 O -0.490 6.490 19 N -0.236 5.236 20 C -0.457 4.457 21 H 0.071 0.929 22 C -0.214 4.214 23 N -0.578 5.578 24 Si 0.785 3.215 25 H -0.182 1.182 26 H -0.201 1.201 27 H -0.153 1.153 28 C -0.068 4.068 29 C -0.141 4.141 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.255 0.745 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.117 0.883 43 H 0.071 0.929 44 H 0.105 0.895 45 H 0.138 0.862 46 H 0.095 0.905 47 H 0.225 0.775 48 H 0.088 0.912 49 H 0.061 0.939 50 H 0.066 0.934 51 H 0.092 0.908 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.707 24.121 -16.394 35.769 hybrid contribution 1.102 0.295 1.167 1.632 sum -19.605 24.416 -15.227 34.819 Atomic orbital electron populations 1.21412 0.92798 1.02161 1.02077 1.22525 0.95489 0.94722 1.03057 0.85894 1.23290 1.03238 1.01644 0.93583 1.22107 0.98470 1.02467 0.94318 0.89523 1.21248 0.96941 0.95650 1.00081 1.21280 0.80144 0.90040 0.78991 1.90695 1.57160 1.34308 1.65080 1.45912 1.24731 1.17009 1.49136 1.21208 0.95209 0.88492 0.94373 1.21328 0.93127 0.99054 0.96724 1.21642 0.92849 1.02631 0.97155 1.22220 0.98350 0.90353 0.96219 1.61411 1.00533 1.42158 1.22700 1.21804 0.92899 0.92909 0.99893 1.21008 0.81751 0.91753 0.81764 1.90540 1.56042 1.38484 1.63969 1.42053 1.22802 1.10695 1.48025 1.18997 1.07702 0.89413 1.29601 0.92895 1.26115 0.97986 1.01786 0.95482 1.69812 1.24855 1.28657 1.34429 0.85360 0.77790 0.77702 0.80621 1.18166 1.20104 1.15303 1.22023 0.91892 0.99863 0.93072 1.21457 0.95342 0.98344 0.98965 0.92222 0.90863 0.93290 0.87602 0.89678 0.86256 0.85926 0.74490 0.92575 0.93330 0.88598 0.92808 0.88292 0.92921 0.89512 0.86229 0.90453 0.77540 0.91209 0.93864 0.93360 0.90794 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 10.19 71.98 0.73 -0.47 16 2 C -0.14 -1.34 6.13 -10.79 -0.07 -1.41 16 3 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 4 C -0.18 -2.15 9.82 30.59 0.30 -1.85 16 5 C -0.15 -2.14 5.13 -10.80 -0.06 -2.19 16 6 H 0.09 1.76 7.31 -2.39 -0.02 1.74 16 7 C -0.10 -0.94 5.98 29.85 0.18 -0.76 16 8 C 0.51 8.92 7.83 87.66 0.69 9.60 16 9 O -0.59 -16.90 15.56 -3.02 -0.05 -16.95 16 10 N -0.71 -9.26 5.31 -463.05 -2.46 -11.72 16 11 C 0.13 2.37 5.07 86.38 0.44 2.81 16 12 C -0.08 -1.36 2.29 -10.72 -0.02 -1.38 16 13 C -0.11 -1.61 5.22 30.65 0.16 -1.45 16 14 C 0.06 1.00 5.46 86.33 0.47 1.47 16 15 N -0.54 -15.59 4.35 -900.94 -3.92 -19.51 16 16 C 0.06 1.68 5.45 85.56 0.47 2.15 16 17 C 0.45 20.31 7.31 87.66 0.64 20.95 16 18 O -0.61 -33.91 14.29 -3.07 -0.04 -33.96 16 19 N -0.59 -27.99 5.09 -306.98 -1.56 -29.55 16 20 C -0.33 -19.34 10.16 84.04 0.85 -18.48 16 21 H 0.05 3.74 7.39 -2.91 -0.02 3.71 16 22 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 23 N -0.94 -56.87 13.96 21.66 0.30 -56.57 16 24 Si 0.97 38.61 27.74 68.60 1.90 40.51 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.23 -7.66 6.52 99.48 0.65 -7.01 16 28 C 0.06 1.75 5.12 86.33 0.44 2.19 16 29 C -0.10 -2.51 5.38 30.65 0.16 -2.34 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.53 7.90 -2.39 -0.02 0.51 16 33 H 0.11 0.97 8.03 -2.39 -0.02 0.95 16 34 H 0.08 1.14 8.05 -2.39 -0.02 1.12 16 35 H 0.12 0.55 7.88 -2.38 -0.02 0.54 16 36 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.42 2.32 7.68 -92.71 -0.71 1.60 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.10 0.83 7.26 -2.38 -0.02 0.81 16 43 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.09 1.38 8.01 -2.39 -0.02 1.36 16 45 H 0.12 2.93 7.98 -2.39 -0.02 2.91 16 46 H 0.08 1.88 8.12 -2.39 -0.02 1.86 16 47 H 0.39 15.05 5.76 -92.71 -0.53 14.52 16 48 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 49 H 0.04 1.07 8.14 -2.39 -0.02 1.06 16 50 H 0.05 1.91 6.06 -2.39 -0.01 1.90 16 51 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -85.43 412.49 -0.36 -85.79 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.39 Total: 33.53 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: 5.86 Total: 8.44 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -7.64 Total: -117.35 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.09 Total: -50.91 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.90 Total: 40.51 kcal Total: -85.43 -0.36 -85.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.297 kcal (2) G-P(sol) polarization free energy of solvation -85.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds