Wall clock time and date at job start Tue Mar 31 2020 21:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.01648 * 2 1 4 4 C 1.54272 * 110.03038 * 238.60555 * 2 1 3 5 5 C 1.54892 * 104.19416 * 217.05738 * 4 2 1 6 6 C 1.54889 * 102.74662 * 37.94294 * 5 4 2 7 7 H 1.08998 * 110.48456 * 80.87247 * 6 5 4 8 8 C 1.50703 * 110.48689 * 203.37543 * 6 5 4 9 9 O 1.21284 * 120.00029 * 118.54647 * 8 6 5 10 10 N 1.34773 * 119.99995 * 298.55275 * 8 6 5 11 11 C 1.46507 * 119.99827 * 179.97438 * 10 8 6 12 12 C 1.53120 * 109.57247 * 85.15809 * 11 10 8 13 13 C 1.53040 * 109.27503 * 177.59162 * 12 11 10 14 14 N 1.46850 * 109.52419 * 300.82105 * 13 12 11 15 15 C 1.46899 * 110.99956 * 185.84140 * 14 13 12 16 16 C 1.50702 * 109.47223 * 65.78880 * 15 14 13 17 17 O 1.21297 * 120.00000 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00075 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00209 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99567 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00134 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99794 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00105 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46859 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46906 * 120.00168 * 23 21 19 26 26 H 1.48503 * 109.47157 * 240.00479 * 23 21 19 27 27 C 1.46841 * 111.19924 * 61.73999 * 14 13 12 28 28 C 1.53042 * 109.52629 * 298.26169 * 27 14 13 29 29 C 1.53875 * 110.07274 * 121.41784 * 2 1 3 30 30 H 1.08999 * 109.47259 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47047 * 299.93894 * 1 2 3 32 32 H 1.09005 * 109.46864 * 59.94268 * 1 2 3 33 33 H 1.08998 * 110.48037 * 98.38384 * 4 2 1 34 34 H 1.08998 * 110.48859 * 335.73611 * 4 2 1 35 35 H 1.08998 * 110.75780 * 279.63263 * 5 4 2 36 36 H 1.08999 * 110.75318 * 156.25717 * 5 4 2 37 37 H 0.96996 * 120.00533 * 359.97438 * 10 8 6 38 38 H 1.09002 * 109.52358 * 324.99770 * 11 10 8 39 39 H 1.09002 * 109.50326 * 297.52533 * 12 11 10 40 40 H 1.08999 * 109.50267 * 57.65189 * 12 11 10 41 41 H 1.09002 * 109.46407 * 180.80522 * 13 12 11 42 42 H 1.08998 * 109.45709 * 60.83037 * 13 12 11 43 43 H 1.09001 * 109.46617 * 185.78423 * 15 14 13 44 44 H 1.08997 * 109.47232 * 305.78881 * 15 14 13 45 45 H 0.97004 * 120.00084 * 359.97438 * 18 16 15 46 46 H 0.96999 * 119.99754 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.46320 * 178.24106 * 27 14 13 48 48 H 1.08998 * 109.45620 * 58.27242 * 27 14 13 49 49 H 1.09003 * 109.49792 * 299.23877 * 28 27 14 50 50 H 1.08997 * 109.53473 * 179.13824 * 28 27 14 51 51 H 1.09006 * 110.03259 * 0.02562 * 29 2 1 52 52 H 1.08997 * 110.03098 * 238.59365 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7550 -1.2372 5 6 3.3144 -1.4995 -0.7200 6 6 2.8890 -1.9398 0.7027 7 1 2.2813 -2.8435 0.6566 8 6 4.1010 -2.1647 1.5697 9 8 4.2646 -1.4962 2.5684 10 7 5.0031 -3.1084 1.2352 11 6 6.1816 -3.3265 2.0778 12 6 5.8268 -4.2854 3.2177 13 6 7.0770 -4.5556 4.0581 14 7 8.1219 -5.1416 3.2089 15 6 9.2872 -5.5421 4.0087 16 6 8.8985 -6.6655 4.9351 17 8 7.7627 -7.0910 4.9292 18 7 9.8130 -7.1973 5.7701 19 6 9.4596 -8.2197 6.6125 20 1 8.4482 -8.5985 6.6071 21 6 10.4026 -8.7683 7.4729 22 7 11.6331 -8.3069 7.4797 23 14 9.9209 -10.1608 8.6212 24 1 8.4878 -10.4943 8.4207 25 1 10.7526 -11.3553 8.3267 26 1 10.1394 -9.7400 10.0285 27 6 8.5126 -4.2195 2.1350 28 6 7.3053 -3.9391 1.2372 29 6 2.0581 -0.7534 1.2334 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8895 33 1 2.3289 -0.0528 -2.0258 34 1 1.3146 -1.4660 -1.5968 35 1 4.1713 -0.8273 -0.6763 36 1 3.5335 -2.3664 -1.3434 37 1 4.8722 -3.6432 0.4367 38 1 6.5142 -2.3749 2.4924 39 1 5.0569 -3.8359 3.8449 40 1 5.4575 -5.2232 2.8028 41 1 6.8311 -5.2492 4.8622 42 1 7.4377 -3.6193 4.4838 43 1 10.0849 -5.8773 3.3459 44 1 9.6351 -4.6916 4.5950 45 1 10.7215 -6.8573 5.7746 46 1 12.2913 -8.6897 8.0806 47 1 9.3094 -4.6688 1.5423 48 1 8.8665 -3.2848 2.5699 49 1 6.9592 -4.8715 0.7911 50 1 7.5912 -3.2426 0.4489 51 1 1.2244 -1.1198 1.8324 52 1 2.6875 -0.0948 1.8319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229462317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:15 Heat of formation + Delta-G solvation = -93.684744 kcal Electronic energy + Delta-G solvation = -29305.106506 eV Core-core repulsion = 25303.111912 eV Total energy + Delta-G solvation = -4001.994593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.50894 -39.17656 -38.08115 -37.31455 -34.96879 -33.83753 -32.32034 -31.30755 -30.96644 -30.67789 -29.23433 -27.21308 -25.67294 -24.46939 -23.12944 -22.94001 -21.77281 -20.47524 -20.06027 -19.37863 -19.16546 -17.83773 -17.61286 -16.49138 -15.94750 -15.73647 -15.49485 -15.16479 -14.91962 -14.65888 -14.40119 -14.10540 -13.91244 -13.74224 -13.68672 -13.57567 -13.37773 -13.09183 -13.03062 -12.50980 -12.29206 -12.06433 -11.87335 -11.66285 -11.49943 -11.48161 -11.19951 -11.17565 -11.13538 -11.10586 -11.05969 -11.01552 -10.75671 -10.61668 -10.47393 -10.32721 -10.20711 -9.79964 -9.47386 -9.08289 -8.40820 -7.95579 -7.81486 -6.40056 -3.80628 2.52424 3.02503 3.17504 3.27967 3.35218 3.92463 4.00779 4.10633 4.15347 4.26289 4.35096 4.63924 4.77292 4.87919 4.94204 4.97476 5.06711 5.07723 5.09550 5.14590 5.20059 5.23715 5.27205 5.36752 5.39168 5.46524 5.51315 5.58523 5.61668 5.64991 5.68910 5.71456 5.77727 5.82074 5.83136 5.86053 6.00176 6.01200 6.03411 6.08573 6.14341 6.29046 6.34839 6.50932 6.57641 7.30670 7.39870 7.45542 7.57213 8.08815 8.12298 8.63972 9.20252 9.56800 10.08673 10.77811 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.001797 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.491721 B =15580.648885 C =16148.981777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.114 4.114 6 C -0.115 4.115 7 H 0.100 0.900 8 C 0.519 3.481 9 O -0.539 6.539 10 N -0.724 5.724 11 C 0.142 3.858 12 C -0.119 4.119 13 C 0.055 3.945 14 N -0.516 5.516 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.058 3.942 28 C -0.119 4.119 29 C -0.108 4.108 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.399 0.601 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.023 0.977 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.270 0.730 47 H 0.078 0.922 48 H 0.032 0.968 49 H 0.077 0.923 50 H 0.069 0.931 51 H 0.068 0.932 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.134 15.741 -19.097 28.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.152 4.152 6 C -0.136 4.136 7 H 0.118 0.882 8 C 0.305 3.695 9 O -0.416 6.416 10 N -0.374 5.374 11 C 0.038 3.962 12 C -0.158 4.158 13 C -0.073 4.073 14 N -0.241 5.241 15 C -0.085 4.085 16 C 0.230 3.770 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.071 4.071 28 C -0.158 4.158 29 C -0.146 4.146 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.233 0.767 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.041 0.959 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.050 0.950 49 H 0.096 0.904 50 H 0.088 0.912 51 H 0.087 0.913 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.816 15.463 -18.465 28.277 hybrid contribution 0.814 -0.112 0.617 1.028 sum -14.002 15.351 -17.848 27.391 Atomic orbital electron populations 1.21890 0.94933 1.01823 1.01599 1.21774 0.95751 0.99604 0.94591 0.90967 1.22448 0.96877 0.99026 0.97314 1.22487 0.98531 1.00427 0.93749 1.22177 0.94988 1.00988 0.95435 0.88155 1.20562 0.84009 0.79258 0.85687 1.90697 1.76396 1.47430 1.27076 1.46113 1.24115 1.38344 1.28822 1.21115 0.84531 0.99302 0.91236 1.21905 0.97973 0.99274 0.96660 1.22216 0.90866 0.97833 0.96355 1.61538 1.09582 1.40426 1.12516 1.21833 0.92933 0.97534 0.96213 1.19753 0.86602 0.86499 0.84192 1.90485 1.20225 1.64155 1.71232 1.41878 1.11748 1.32542 1.34012 1.19749 0.98185 1.10470 1.14298 0.87868 1.25256 0.94957 0.99217 0.98563 1.69623 1.02800 1.42822 1.39120 0.85808 0.78861 0.80281 0.79440 1.19241 1.20780 1.20802 1.22025 0.96688 0.94686 0.93676 1.21823 0.94963 1.01234 0.97750 1.22157 0.99163 0.95946 0.97289 0.92555 0.92639 0.92796 0.91444 0.91187 0.90973 0.90850 0.76743 0.89924 0.91497 0.90769 0.87560 0.95881 0.89324 0.93471 0.77509 0.91968 0.90323 0.95032 0.90384 0.91249 0.91291 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 8.84 37.16 0.33 -0.49 16 2 C -0.10 -0.64 3.50 -89.50 -0.31 -0.95 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.12 -0.65 6.36 -25.07 -0.16 -0.81 16 5 C -0.11 -0.68 6.26 -24.74 -0.15 -0.84 16 6 C -0.11 -0.90 3.25 -90.11 -0.29 -1.19 16 7 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 8 C 0.52 5.80 7.12 -10.99 -0.08 5.72 16 9 O -0.54 -8.31 15.12 5.55 0.08 -8.23 16 10 N -0.72 -7.04 5.02 -53.68 -0.27 -7.31 16 11 C 0.14 1.70 2.52 -67.80 -0.17 1.52 16 12 C -0.12 -1.74 5.67 -26.65 -0.15 -1.89 16 13 C 0.06 0.94 5.11 -3.83 -0.02 0.92 16 14 N -0.52 -8.53 4.40 -236.11 -1.04 -9.57 16 15 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 16 C 0.44 10.48 7.46 -10.99 -0.08 10.40 16 17 O -0.58 -15.47 13.90 5.54 0.08 -15.39 16 18 N -0.57 -14.34 5.29 -10.96 -0.06 -14.40 16 19 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 23 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 C 0.06 0.72 5.46 -3.83 -0.02 0.70 16 28 C -0.12 -1.24 5.57 -26.65 -0.15 -1.39 16 29 C -0.11 -0.90 5.81 -25.62 -0.15 -1.05 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.34 7.85 -51.93 -0.41 -0.07 16 35 H 0.07 0.49 8.05 -51.93 -0.42 0.08 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.40 2.79 8.59 -40.82 -0.35 2.44 16 38 H 0.08 1.13 7.58 -51.93 -0.39 0.73 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.11 2.20 5.78 -51.93 -0.30 1.90 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 1.42 7.99 -51.93 -0.41 1.00 16 44 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 45 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 46 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 48 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.07 0.57 7.67 -51.93 -0.40 0.17 16 52 H 0.08 0.88 6.90 -51.93 -0.36 0.52 16 LS Contribution 406.97 15.07 6.13 6.13 Total: -1.00 -32.74 406.97 -10.26 -43.00 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -9.21 Total: 10.06 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.68 Total: 3.47 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.64 Total: -55.19 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: 0.16 Total: -23.62 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.74 -10.26 -43.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229462317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.681 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds