Wall clock time and date at job start Tue Mar 31 2020 21:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.01648 * 2 1 4 4 C 1.54272 * 110.03038 * 238.60555 * 2 1 3 5 5 C 1.54892 * 104.19416 * 217.05738 * 4 2 1 6 6 C 1.54889 * 102.74662 * 37.94294 * 5 4 2 7 7 H 1.08998 * 110.48456 * 80.87247 * 6 5 4 8 8 C 1.50703 * 110.48689 * 203.37543 * 6 5 4 9 9 O 1.21284 * 120.00029 * 118.54647 * 8 6 5 10 10 N 1.34773 * 119.99995 * 298.55275 * 8 6 5 11 11 C 1.46507 * 119.99827 * 179.97438 * 10 8 6 12 12 C 1.53120 * 109.57247 * 85.15809 * 11 10 8 13 13 C 1.53040 * 109.27503 * 177.59162 * 12 11 10 14 14 N 1.46850 * 109.52419 * 300.82105 * 13 12 11 15 15 C 1.46899 * 110.99956 * 185.84140 * 14 13 12 16 16 C 1.50702 * 109.47223 * 65.78880 * 15 14 13 17 17 O 1.21297 * 120.00000 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00075 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00209 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99567 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00134 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99794 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00105 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46859 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.46906 * 120.00168 * 23 21 19 26 26 H 1.48503 * 109.47157 * 240.00479 * 23 21 19 27 27 C 1.46841 * 111.19924 * 61.73999 * 14 13 12 28 28 C 1.53042 * 109.52629 * 298.26169 * 27 14 13 29 29 C 1.53875 * 110.07274 * 121.41784 * 2 1 3 30 30 H 1.08999 * 109.47259 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47047 * 299.93894 * 1 2 3 32 32 H 1.09005 * 109.46864 * 59.94268 * 1 2 3 33 33 H 1.08998 * 110.48037 * 98.38384 * 4 2 1 34 34 H 1.08998 * 110.48859 * 335.73611 * 4 2 1 35 35 H 1.08998 * 110.75780 * 279.63263 * 5 4 2 36 36 H 1.08999 * 110.75318 * 156.25717 * 5 4 2 37 37 H 0.96996 * 120.00533 * 359.97438 * 10 8 6 38 38 H 1.09002 * 109.52358 * 324.99770 * 11 10 8 39 39 H 1.09002 * 109.50326 * 297.52533 * 12 11 10 40 40 H 1.08999 * 109.50267 * 57.65189 * 12 11 10 41 41 H 1.09002 * 109.46407 * 180.80522 * 13 12 11 42 42 H 1.08998 * 109.45709 * 60.83037 * 13 12 11 43 43 H 1.09001 * 109.46617 * 185.78423 * 15 14 13 44 44 H 1.08997 * 109.47232 * 305.78881 * 15 14 13 45 45 H 0.97004 * 120.00084 * 359.97438 * 18 16 15 46 46 H 0.96999 * 119.99754 * 179.97438 * 22 21 19 47 47 H 1.08998 * 109.46320 * 178.24106 * 27 14 13 48 48 H 1.08998 * 109.45620 * 58.27242 * 27 14 13 49 49 H 1.09003 * 109.49792 * 299.23877 * 28 27 14 50 50 H 1.08997 * 109.53473 * 179.13824 * 28 27 14 51 51 H 1.09006 * 110.03259 * 0.02562 * 29 2 1 52 52 H 1.08997 * 110.03098 * 238.59365 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7550 -1.2372 5 6 3.3144 -1.4995 -0.7200 6 6 2.8890 -1.9398 0.7027 7 1 2.2813 -2.8435 0.6566 8 6 4.1010 -2.1647 1.5697 9 8 4.2646 -1.4962 2.5684 10 7 5.0031 -3.1084 1.2352 11 6 6.1816 -3.3265 2.0778 12 6 5.8268 -4.2854 3.2177 13 6 7.0770 -4.5556 4.0581 14 7 8.1219 -5.1416 3.2089 15 6 9.2872 -5.5421 4.0087 16 6 8.8985 -6.6655 4.9351 17 8 7.7627 -7.0910 4.9292 18 7 9.8130 -7.1973 5.7701 19 6 9.4596 -8.2197 6.6125 20 1 8.4482 -8.5985 6.6071 21 6 10.4026 -8.7683 7.4729 22 7 11.6331 -8.3069 7.4797 23 14 9.9209 -10.1608 8.6212 24 1 8.4878 -10.4943 8.4207 25 1 10.7526 -11.3553 8.3267 26 1 10.1394 -9.7400 10.0285 27 6 8.5126 -4.2195 2.1350 28 6 7.3053 -3.9391 1.2372 29 6 2.0581 -0.7534 1.2334 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5129 0.8905 32 1 -0.3633 0.5148 -0.8895 33 1 2.3289 -0.0528 -2.0258 34 1 1.3146 -1.4660 -1.5968 35 1 4.1713 -0.8273 -0.6763 36 1 3.5335 -2.3664 -1.3434 37 1 4.8722 -3.6432 0.4367 38 1 6.5142 -2.3749 2.4924 39 1 5.0569 -3.8359 3.8449 40 1 5.4575 -5.2232 2.8028 41 1 6.8311 -5.2492 4.8622 42 1 7.4377 -3.6193 4.4838 43 1 10.0849 -5.8773 3.3459 44 1 9.6351 -4.6916 4.5950 45 1 10.7215 -6.8573 5.7746 46 1 12.2913 -8.6897 8.0806 47 1 9.3094 -4.6688 1.5423 48 1 8.8665 -3.2848 2.5699 49 1 6.9592 -4.8715 0.7911 50 1 7.5912 -3.2426 0.4489 51 1 1.2244 -1.1198 1.8324 52 1 2.6875 -0.0948 1.8319 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229462317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:11 Heat of formation + Delta-G solvation = -116.639523 kcal Electronic energy + Delta-G solvation = -29306.101900 eV Core-core repulsion = 25303.111912 eV Total energy + Delta-G solvation = -4002.989987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.40891 -40.54497 -39.32632 -38.36957 -36.23317 -35.71837 -33.38889 -33.07640 -31.85316 -31.82525 -29.80777 -28.67223 -26.65969 -25.93471 -24.24557 -24.04461 -22.57783 -21.31338 -21.03282 -20.86506 -20.13846 -19.86883 -18.40893 -17.73081 -17.41667 -16.72160 -16.53542 -16.44485 -16.23167 -15.93992 -15.63383 -15.38201 -15.30593 -14.92061 -14.76515 -14.40632 -14.35069 -14.12975 -13.97643 -13.77169 -13.50853 -13.19187 -13.01515 -12.93548 -12.79035 -12.68067 -12.42349 -12.32611 -12.19286 -12.11481 -12.08221 -11.85110 -11.69342 -11.67428 -11.56072 -11.51027 -11.44231 -11.30384 -10.73766 -10.29106 -10.04807 -9.96191 -9.20939 -8.46268 -5.94576 1.36102 1.41126 1.55258 1.64649 2.06499 2.18312 2.28496 2.76394 3.20599 3.38082 3.51675 3.58270 3.72399 3.82179 3.87545 4.07039 4.16285 4.19738 4.29450 4.36116 4.36984 4.43378 4.47654 4.52248 4.54352 4.55872 4.58451 4.66224 4.72950 4.74526 4.75442 4.90916 4.97558 4.98193 5.02099 5.08910 5.11456 5.12730 5.17129 5.30277 5.31620 5.35302 5.40001 5.41618 5.54476 5.57431 5.89088 6.07529 6.24646 6.59672 6.61756 7.14026 7.29182 7.57746 8.13893 8.71397 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028638 B = 0.001797 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.491721 B =15580.648885 C =16148.981777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.066 0.934 4 C -0.114 4.114 5 C -0.108 4.108 6 C -0.110 4.110 7 H 0.119 0.881 8 C 0.514 3.486 9 O -0.588 6.588 10 N -0.710 5.710 11 C 0.151 3.849 12 C -0.110 4.110 13 C 0.060 3.940 14 N -0.529 5.529 15 C 0.057 3.943 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.054 3.946 28 C -0.109 4.109 29 C -0.110 4.110 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.416 0.584 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.024 0.976 43 H 0.117 0.883 44 H 0.063 0.937 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.100 0.900 48 H 0.039 0.961 49 H 0.083 0.917 50 H 0.102 0.898 51 H 0.065 0.935 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.965 15.845 -21.772 30.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.146 4.146 6 C -0.131 4.131 7 H 0.137 0.863 8 C 0.302 3.698 9 O -0.468 6.468 10 N -0.361 5.361 11 C 0.045 3.955 12 C -0.149 4.149 13 C -0.068 4.068 14 N -0.254 5.254 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.074 4.074 28 C -0.147 4.147 29 C -0.148 4.148 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.253 0.747 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.134 0.866 44 H 0.081 0.919 45 H 0.230 0.770 46 H 0.086 0.914 47 H 0.118 0.882 48 H 0.057 0.943 49 H 0.102 0.898 50 H 0.120 0.880 51 H 0.083 0.917 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.630 15.569 -21.192 30.092 hybrid contribution 0.730 -0.101 1.466 1.641 sum -13.900 15.468 -19.727 28.664 Atomic orbital electron populations 1.21874 0.94183 1.02166 1.01836 1.21762 0.96365 0.99220 0.94264 0.91512 1.22446 0.96747 0.99241 0.96746 1.22503 0.98448 1.01222 0.92432 1.22224 0.93461 1.01460 0.95919 0.86319 1.21206 0.84714 0.78554 0.85280 1.90683 1.77556 1.49274 1.29334 1.45956 1.23156 1.38053 1.28890 1.20886 0.85902 0.97682 0.90984 1.21772 0.96336 0.99540 0.97218 1.22009 0.92332 0.96503 0.95962 1.61519 1.08979 1.42173 1.12775 1.21734 0.94061 0.95682 0.95922 1.20814 0.85668 0.86893 0.83826 1.90465 1.21818 1.65521 1.72177 1.41941 1.12256 1.32596 1.34476 1.19684 0.97634 1.12354 1.16402 0.90416 1.26017 0.94786 1.01112 0.99378 1.69680 1.03330 1.43594 1.39580 0.84883 0.78190 0.77631 0.77696 1.19913 1.19492 1.19728 1.22217 0.98271 0.94239 0.92629 1.21790 0.93219 1.02120 0.97558 1.22146 0.98687 0.96028 0.97967 0.92143 0.93254 0.91746 0.90466 0.89954 0.91880 0.88426 0.74678 0.91557 0.93231 0.91463 0.92032 0.95761 0.86551 0.91915 0.77040 0.91357 0.88192 0.94273 0.89805 0.87996 0.91661 0.92821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.84 71.98 0.64 -0.78 16 2 C -0.10 -1.16 3.50 -10.07 -0.04 -1.19 16 3 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 4 C -0.11 -0.94 6.36 31.67 0.20 -0.74 16 5 C -0.11 -1.00 6.26 31.89 0.20 -0.81 16 6 C -0.11 -1.57 3.25 -10.47 -0.03 -1.61 16 7 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 8 C 0.51 11.26 7.12 87.66 0.62 11.88 16 9 O -0.59 -18.80 15.12 -3.04 -0.05 -18.84 16 10 N -0.71 -12.67 5.02 -442.14 -2.22 -14.89 16 11 C 0.15 3.42 2.52 45.07 0.11 3.53 16 12 C -0.11 -3.27 5.67 30.65 0.17 -3.09 16 13 C 0.06 2.12 5.11 86.33 0.44 2.56 16 14 N -0.53 -17.04 4.40 -900.93 -3.96 -21.00 16 15 C 0.06 1.99 5.45 85.56 0.47 2.46 16 16 C 0.44 21.26 7.46 87.66 0.65 21.91 16 17 O -0.61 -34.28 13.90 -3.08 -0.04 -34.32 16 18 N -0.58 -29.89 5.29 -306.98 -1.62 -31.51 16 19 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 22 N -0.92 -50.13 13.05 21.66 0.28 -49.84 16 23 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 27 C 0.05 1.19 5.46 86.33 0.47 1.67 16 28 C -0.11 -1.92 5.57 30.65 0.17 -1.75 16 29 C -0.11 -1.85 5.81 31.32 0.18 -1.67 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.08 0.51 7.85 -2.39 -0.02 0.49 16 35 H 0.06 0.73 8.05 -2.39 -0.02 0.71 16 36 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.42 4.60 8.59 -92.71 -0.80 3.80 16 38 H 0.07 1.78 7.58 -2.39 -0.02 1.76 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 41 H 0.06 2.71 5.78 -2.39 -0.01 2.70 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.12 3.44 7.99 -2.39 -0.02 3.43 16 44 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 45 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 46 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 47 H 0.10 1.84 8.01 -2.39 -0.02 1.82 16 48 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.06 1.10 7.67 -2.38 -0.02 1.08 16 52 H 0.05 1.22 6.90 -2.39 -0.02 1.20 16 Total: -1.00 -74.76 406.97 -0.65 -75.42 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: -0.61 Total: 35.54 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 5.54 Total: 13.88 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -7.52 Total: -117.25 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.09 Total: -53.16 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -74.76 -0.65 -75.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229462317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.223 kcal (2) G-P(sol) polarization free energy of solvation -74.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds