Wall clock time and date at job start Tue Mar 31 2020 21:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.67370 * 2 1 4 4 C 1.54894 * 110.75558 * 236.77036 * 2 1 3 5 5 C 1.54268 * 104.19570 * 203.74554 * 4 2 1 6 6 C 1.53877 * 106.59894 * 23.60180 * 5 4 2 7 7 H 1.08996 * 110.03613 * 240.67010 * 6 5 4 8 8 C 1.50703 * 110.02804 * 119.28648 * 6 5 4 9 9 O 1.21280 * 119.99921 * 241.45313 * 8 6 5 10 10 N 1.34780 * 119.99714 * 61.45830 * 8 6 5 11 11 C 1.46499 * 119.99987 * 179.97438 * 10 8 6 12 12 C 1.53114 * 109.52514 * 154.99772 * 11 10 8 13 13 C 1.53037 * 109.31211 * 177.60373 * 12 11 10 14 14 N 1.46854 * 109.52285 * 300.88400 * 13 12 11 15 15 C 1.46895 * 110.99648 * 185.80147 * 14 13 12 16 16 C 1.50706 * 109.47267 * 65.74718 * 15 14 13 17 17 O 1.21284 * 119.99642 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99793 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99495 * 180.02562 * 18 16 15 20 20 H 1.07993 * 120.00374 * 359.97438 * 19 18 16 21 21 C 1.38958 * 119.99629 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00046 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99793 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47028 * 89.99823 * 23 21 19 25 25 H 1.48502 * 109.47108 * 210.00121 * 23 21 19 26 26 H 1.48499 * 109.47075 * 329.99686 * 23 21 19 27 27 C 1.46840 * 111.23238 * 61.67711 * 14 13 12 28 28 C 1.53035 * 109.52994 * 298.28004 * 27 14 13 29 29 C 1.54271 * 106.59777 * 0.02562 * 6 5 4 30 30 H 1.08995 * 109.46969 * 181.78058 * 1 2 3 31 31 H 1.08996 * 109.46913 * 301.77880 * 1 2 3 32 32 H 1.09004 * 109.47164 * 61.77894 * 1 2 3 33 33 H 1.08993 * 110.49193 * 85.05993 * 4 2 1 34 34 H 1.09003 * 110.59572 * 322.47196 * 4 2 1 35 35 H 1.09002 * 110.03072 * 264.32378 * 5 4 2 36 36 H 1.08989 * 110.03573 * 142.89440 * 5 4 2 37 37 H 0.96995 * 119.99864 * 359.97438 * 10 8 6 38 38 H 1.09007 * 109.52186 * 34.86537 * 11 10 8 39 39 H 1.09002 * 109.50377 * 297.56498 * 12 11 10 40 40 H 1.09003 * 109.50316 * 57.64493 * 12 11 10 41 41 H 1.09000 * 109.46159 * 60.85546 * 13 12 11 42 42 H 1.09000 * 109.46461 * 180.82902 * 13 12 11 43 43 H 1.09006 * 109.47095 * 185.74417 * 15 14 13 44 44 H 1.08994 * 109.47117 * 305.74495 * 15 14 13 45 45 H 0.96995 * 120.00333 * 359.97438 * 18 16 15 46 46 H 0.97001 * 119.99745 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.46294 * 178.26219 * 27 14 13 48 48 H 1.09003 * 109.45458 * 58.29272 * 27 14 13 49 49 H 1.09005 * 109.50290 * 299.24575 * 28 27 14 50 50 H 1.08998 * 109.54151 * 179.13613 * 28 27 14 51 51 H 1.08995 * 110.48367 * 95.06809 * 29 6 5 52 52 H 1.08999 * 110.48410 * 217.70697 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7937 -1.2116 5 6 3.4931 -1.2255 -0.7717 6 6 3.4932 -1.2282 0.7671 7 1 4.2332 -0.5211 1.1418 8 6 3.7957 -2.6123 1.2808 9 8 2.9794 -3.1992 1.9591 10 7 4.9735 -3.1977 0.9866 11 6 5.2679 -4.5430 1.4864 12 6 6.2931 -5.2164 0.5700 13 6 6.6418 -6.5975 1.1294 14 7 7.1886 -6.4542 2.4848 15 6 7.6620 -7.7456 3.0006 16 6 8.8369 -8.2137 2.1809 17 8 9.2402 -7.5378 1.2582 18 7 9.4398 -9.3829 2.4739 19 6 10.5088 -9.8085 1.7285 20 1 10.8675 -9.2071 0.9064 21 6 11.1309 -11.0137 2.0309 22 7 10.6941 -11.7458 3.0310 23 14 12.5870 -11.5939 1.0148 24 1 13.8447 -11.0798 1.6138 25 1 12.6179 -13.0785 0.9969 26 1 12.4558 -11.0848 -0.3739 27 6 6.2048 -5.8530 3.3942 28 6 5.8439 -4.4496 2.9021 29 6 2.0788 -0.7986 1.2086 30 1 -0.3633 -1.0271 0.0319 31 1 -0.3633 0.5412 0.8736 32 1 -0.3634 0.4860 -0.9055 33 1 2.1319 -0.1555 -2.0935 34 1 1.4581 -1.6673 -1.4108 35 1 4.2327 -0.5164 -1.1438 36 1 3.7120 -2.2251 -1.1468 37 1 5.6262 -2.7284 0.4439 38 1 4.3518 -5.1335 1.5042 39 1 5.8721 -5.3244 -0.4297 40 1 7.1944 -4.6053 0.5212 41 1 5.7428 -7.2128 1.1643 42 1 7.3827 -7.0732 0.4868 43 1 7.9673 -7.6315 4.0408 44 1 6.8586 -8.4792 2.9361 45 1 9.1179 -9.9229 3.2125 46 1 11.1285 -12.5869 3.2422 47 1 6.6286 -5.7886 4.3964 48 1 5.3074 -6.4713 3.4185 49 1 6.7385 -3.8268 2.8905 50 1 5.1023 -4.0091 3.5684 51 1 1.4577 -1.6730 1.4025 52 1 2.1317 -0.1634 2.0928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229462318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:21 Heat of formation + Delta-G solvation = -93.638260 kcal Electronic energy + Delta-G solvation = -29318.757534 eV Core-core repulsion = 25316.764957 eV Total energy + Delta-G solvation = -4001.992578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -40.56039 -39.17833 -38.03595 -37.27723 -34.98256 -33.85401 -32.37438 -31.33157 -30.95056 -30.70125 -29.21988 -27.22165 -25.70355 -24.47244 -23.20300 -22.83850 -21.68797 -20.35917 -20.23037 -19.47180 -19.16831 -17.85082 -17.28415 -16.48203 -16.38122 -15.96879 -15.35863 -14.92318 -14.86932 -14.66780 -14.41388 -14.09765 -13.96003 -13.85963 -13.74551 -13.52925 -13.34969 -13.14776 -13.02144 -12.44707 -12.30174 -11.86851 -11.78535 -11.66845 -11.57664 -11.45394 -11.31821 -11.26080 -11.09545 -11.07712 -11.03973 -10.90639 -10.87976 -10.74094 -10.40808 -10.37474 -10.21405 -9.81884 -9.46495 -9.11745 -8.42467 -7.96920 -7.81919 -6.41129 -3.81879 2.49831 3.00824 3.17953 3.26555 3.32019 3.91122 4.01043 4.10254 4.15259 4.25311 4.36432 4.69273 4.82441 4.82659 4.86890 5.02783 5.08057 5.09605 5.15741 5.18963 5.21521 5.22997 5.26171 5.33977 5.39097 5.49004 5.54022 5.54421 5.61826 5.65548 5.69426 5.72082 5.81092 5.83367 5.87529 5.88677 5.89545 6.03032 6.03541 6.11827 6.15557 6.27102 6.31959 6.44089 6.49797 7.30114 7.38489 7.45068 7.55660 8.07192 8.09652 8.62641 9.18708 9.55513 10.07213 10.76609 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034500 B = 0.001761 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.407784 B =15897.985247 C =16391.381574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.120 4.120 5 C -0.117 4.117 6 C -0.115 4.115 7 H 0.098 0.902 8 C 0.518 3.482 9 O -0.541 6.541 10 N -0.724 5.724 11 C 0.143 3.857 12 C -0.118 4.118 13 C 0.056 3.944 14 N -0.516 5.516 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.058 3.942 28 C -0.121 4.121 29 C -0.106 4.106 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.400 0.600 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.023 0.977 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.076 0.924 48 H 0.031 0.969 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.087 0.913 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.135 21.193 -3.980 27.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.157 4.157 5 C -0.155 4.155 6 C -0.137 4.137 7 H 0.116 0.884 8 C 0.305 3.695 9 O -0.418 6.418 10 N -0.374 5.374 11 C 0.038 3.962 12 C -0.156 4.156 13 C -0.072 4.072 14 N -0.241 5.241 15 C -0.085 4.085 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.195 1.195 27 C -0.071 4.071 28 C -0.160 4.160 29 C -0.144 4.144 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.041 0.959 42 H 0.127 0.873 43 H 0.107 0.893 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.049 0.951 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.105 0.895 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.980 21.331 -4.074 27.567 hybrid contribution 0.312 -1.059 -0.050 1.105 sum -16.669 20.273 -4.124 26.567 Atomic orbital electron populations 1.21752 0.94804 1.02054 1.01546 1.22125 0.95691 0.99005 0.94854 0.90615 1.22426 0.95610 0.99949 0.97745 1.22148 0.98269 1.02292 0.92800 1.21985 1.00235 0.94303 0.97133 0.88397 1.20611 0.81302 0.87956 0.79666 1.90681 1.47185 1.65230 1.38673 1.46145 1.18395 1.18291 1.54600 1.21115 0.98666 0.82561 0.93824 1.21819 0.98543 0.97384 0.97854 1.22193 0.98571 0.95374 0.91053 1.61513 1.36945 1.23694 1.01920 1.21836 0.97015 0.90145 0.99532 1.19748 0.86513 0.83198 0.87574 1.90469 1.66937 1.56159 1.32681 1.41874 1.29106 1.18321 1.30800 1.19694 1.06764 1.03817 1.12568 0.87917 1.25258 0.99385 0.96202 0.97103 1.69612 1.41889 1.14198 1.28600 0.85862 0.80897 0.77562 0.79981 1.20419 1.20970 1.19463 1.22051 0.93743 0.94630 0.96681 1.21919 1.00916 0.97274 0.95931 1.22396 0.93981 1.00629 0.97384 0.92462 0.92626 0.92707 0.91443 0.91372 0.90825 0.91203 0.76599 0.89913 0.91342 0.90299 0.95851 0.87341 0.89315 0.93475 0.77489 0.91894 0.90531 0.95067 0.90839 0.91404 0.89467 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.27 37.16 0.34 -0.52 16 2 C -0.10 -0.62 3.50 -88.62 -0.31 -0.93 16 3 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.12 -0.75 6.27 -25.07 -0.16 -0.91 16 5 C -0.12 -0.74 6.36 -25.61 -0.16 -0.90 16 6 C -0.12 -0.88 3.30 -90.65 -0.30 -1.18 16 7 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 8 C 0.52 5.63 6.90 -10.98 -0.08 5.55 16 9 O -0.54 -7.98 15.08 5.56 0.08 -7.90 16 10 N -0.72 -7.07 4.93 -53.68 -0.26 -7.34 16 11 C 0.14 1.70 2.52 -67.81 -0.17 1.53 16 12 C -0.12 -1.49 5.56 -26.65 -0.15 -1.64 16 13 C 0.06 0.90 5.11 -3.83 -0.02 0.88 16 14 N -0.52 -8.55 4.40 -236.11 -1.04 -9.59 16 15 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 16 C 0.44 10.36 7.46 -10.98 -0.08 10.28 16 17 O -0.58 -15.20 13.90 5.55 0.08 -15.12 16 18 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 27 C 0.06 0.78 5.46 -3.84 -0.02 0.76 16 28 C -0.12 -1.50 5.68 -26.65 -0.15 -1.66 16 29 C -0.11 -0.85 5.59 -25.06 -0.14 -0.99 16 30 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.49 7.59 -51.94 -0.39 0.10 16 37 H 0.40 2.97 8.57 -40.82 -0.35 2.62 16 38 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 2.10 5.78 -51.93 -0.30 1.80 16 43 H 0.09 1.45 7.99 -51.93 -0.41 1.03 16 44 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 45 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 46 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.08 0.97 8.02 -51.93 -0.42 0.55 16 48 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.09 0.90 6.78 -51.93 -0.35 0.55 16 52 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 406.92 15.07 6.13 6.13 Total: -1.00 -32.00 406.92 -10.24 -42.23 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -9.21 Total: 10.53 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.66 Total: 3.13 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.64 Total: -54.96 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: 0.16 Total: -23.02 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.00 -10.24 -42.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229462318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.404 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds