Wall clock time and date at job start Tue Mar 31 2020 21:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.67370 * 2 1 4 4 C 1.54894 * 110.75558 * 236.77036 * 2 1 3 5 5 C 1.54268 * 104.19570 * 203.74554 * 4 2 1 6 6 C 1.53877 * 106.59894 * 23.60180 * 5 4 2 7 7 H 1.08996 * 110.03613 * 240.67010 * 6 5 4 8 8 C 1.50703 * 110.02804 * 119.28648 * 6 5 4 9 9 O 1.21280 * 119.99921 * 241.45313 * 8 6 5 10 10 N 1.34780 * 119.99714 * 61.45830 * 8 6 5 11 11 C 1.46499 * 119.99987 * 179.97438 * 10 8 6 12 12 C 1.53114 * 109.52514 * 154.99772 * 11 10 8 13 13 C 1.53037 * 109.31211 * 177.60373 * 12 11 10 14 14 N 1.46854 * 109.52285 * 300.88400 * 13 12 11 15 15 C 1.46895 * 110.99648 * 185.80147 * 14 13 12 16 16 C 1.50706 * 109.47267 * 65.74718 * 15 14 13 17 17 O 1.21284 * 119.99642 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99793 * 179.97438 * 16 15 14 19 19 C 1.37097 * 119.99495 * 180.02562 * 18 16 15 20 20 H 1.07993 * 120.00374 * 359.97438 * 19 18 16 21 21 C 1.38958 * 119.99629 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00046 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99793 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47028 * 89.99823 * 23 21 19 25 25 H 1.48502 * 109.47108 * 210.00121 * 23 21 19 26 26 H 1.48499 * 109.47075 * 329.99686 * 23 21 19 27 27 C 1.46840 * 111.23238 * 61.67711 * 14 13 12 28 28 C 1.53035 * 109.52994 * 298.28004 * 27 14 13 29 29 C 1.54271 * 106.59777 * 0.02562 * 6 5 4 30 30 H 1.08995 * 109.46969 * 181.78058 * 1 2 3 31 31 H 1.08996 * 109.46913 * 301.77880 * 1 2 3 32 32 H 1.09004 * 109.47164 * 61.77894 * 1 2 3 33 33 H 1.08993 * 110.49193 * 85.05993 * 4 2 1 34 34 H 1.09003 * 110.59572 * 322.47196 * 4 2 1 35 35 H 1.09002 * 110.03072 * 264.32378 * 5 4 2 36 36 H 1.08989 * 110.03573 * 142.89440 * 5 4 2 37 37 H 0.96995 * 119.99864 * 359.97438 * 10 8 6 38 38 H 1.09007 * 109.52186 * 34.86537 * 11 10 8 39 39 H 1.09002 * 109.50377 * 297.56498 * 12 11 10 40 40 H 1.09003 * 109.50316 * 57.64493 * 12 11 10 41 41 H 1.09000 * 109.46159 * 60.85546 * 13 12 11 42 42 H 1.09000 * 109.46461 * 180.82902 * 13 12 11 43 43 H 1.09006 * 109.47095 * 185.74417 * 15 14 13 44 44 H 1.08994 * 109.47117 * 305.74495 * 15 14 13 45 45 H 0.96995 * 120.00333 * 359.97438 * 18 16 15 46 46 H 0.97001 * 119.99745 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.46294 * 178.26219 * 27 14 13 48 48 H 1.09003 * 109.45458 * 58.29272 * 27 14 13 49 49 H 1.09005 * 109.50290 * 299.24575 * 28 27 14 50 50 H 1.08998 * 109.54151 * 179.13613 * 28 27 14 51 51 H 1.08995 * 110.48367 * 95.06809 * 29 6 5 52 52 H 1.08999 * 110.48410 * 217.70697 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0789 -0.7937 -1.2116 5 6 3.4931 -1.2255 -0.7717 6 6 3.4932 -1.2282 0.7671 7 1 4.2332 -0.5211 1.1418 8 6 3.7957 -2.6123 1.2808 9 8 2.9794 -3.1992 1.9591 10 7 4.9735 -3.1977 0.9866 11 6 5.2679 -4.5430 1.4864 12 6 6.2931 -5.2164 0.5700 13 6 6.6418 -6.5975 1.1294 14 7 7.1886 -6.4542 2.4848 15 6 7.6620 -7.7456 3.0006 16 6 8.8369 -8.2137 2.1809 17 8 9.2402 -7.5378 1.2582 18 7 9.4398 -9.3829 2.4739 19 6 10.5088 -9.8085 1.7285 20 1 10.8675 -9.2071 0.9064 21 6 11.1309 -11.0137 2.0309 22 7 10.6941 -11.7458 3.0310 23 14 12.5870 -11.5939 1.0148 24 1 13.8447 -11.0798 1.6138 25 1 12.6179 -13.0785 0.9969 26 1 12.4558 -11.0848 -0.3739 27 6 6.2048 -5.8530 3.3942 28 6 5.8439 -4.4496 2.9021 29 6 2.0788 -0.7986 1.2086 30 1 -0.3633 -1.0271 0.0319 31 1 -0.3633 0.5412 0.8736 32 1 -0.3634 0.4860 -0.9055 33 1 2.1319 -0.1555 -2.0935 34 1 1.4581 -1.6673 -1.4108 35 1 4.2327 -0.5164 -1.1438 36 1 3.7120 -2.2251 -1.1468 37 1 5.6262 -2.7284 0.4439 38 1 4.3518 -5.1335 1.5042 39 1 5.8721 -5.3244 -0.4297 40 1 7.1944 -4.6053 0.5212 41 1 5.7428 -7.2128 1.1643 42 1 7.3827 -7.0732 0.4868 43 1 7.9673 -7.6315 4.0408 44 1 6.8586 -8.4792 2.9361 45 1 9.1179 -9.9229 3.2125 46 1 11.1285 -12.5869 3.2422 47 1 6.6286 -5.7886 4.3964 48 1 5.3074 -6.4713 3.4185 49 1 6.7385 -3.8268 2.8905 50 1 5.1023 -4.0091 3.5684 51 1 1.4577 -1.6730 1.4025 52 1 2.1317 -0.1634 2.0928 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229462318.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:20 Heat of formation + Delta-G solvation = -115.365598 kcal Electronic energy + Delta-G solvation = -29319.699702 eV Core-core repulsion = 25316.764957 eV Total energy + Delta-G solvation = -4002.934746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43422 -40.54985 -39.31093 -38.28232 -36.22275 -35.71383 -33.39114 -33.09859 -31.89090 -31.82639 -29.79835 -28.67395 -26.68025 -25.94807 -24.35057 -23.91978 -22.53482 -21.21591 -21.02124 -20.87856 -20.33189 -19.85407 -18.06284 -17.76306 -17.39103 -17.02740 -16.66511 -16.43030 -16.27860 -15.72080 -15.61425 -15.39122 -15.31108 -14.86088 -14.74097 -14.50102 -14.32172 -14.22089 -13.88921 -13.84497 -13.49411 -13.19159 -13.03361 -12.93725 -12.72255 -12.46649 -12.38478 -12.34789 -12.24277 -12.19325 -12.11231 -11.82655 -11.82255 -11.66816 -11.63532 -11.41889 -11.40697 -11.34210 -10.71316 -10.24222 -10.05135 -9.97498 -9.21314 -8.44926 -5.93373 1.38886 1.42453 1.55022 1.65604 2.07149 2.17236 2.29248 2.74925 3.22035 3.38942 3.51447 3.58683 3.70543 3.81702 3.86531 4.06442 4.17888 4.18614 4.29236 4.34925 4.35936 4.46053 4.46989 4.52202 4.53748 4.54712 4.64789 4.66195 4.70935 4.71499 4.74631 4.88332 4.90775 4.96937 5.05108 5.06874 5.10931 5.13774 5.16392 5.28755 5.30877 5.33907 5.36766 5.42590 5.51843 5.60396 5.89461 6.08978 6.22007 6.58982 6.62444 7.14681 7.27877 7.58550 8.13969 8.72508 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034500 B = 0.001761 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.407784 B =15897.985247 C =16391.381574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.091 0.909 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.109 4.109 7 H 0.121 0.879 8 C 0.516 3.484 9 O -0.584 6.584 10 N -0.713 5.713 11 C 0.151 3.849 12 C -0.106 4.106 13 C 0.056 3.944 14 N -0.529 5.529 15 C 0.056 3.944 16 C 0.443 3.557 17 O -0.611 6.611 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.272 1.272 27 C 0.059 3.941 28 C -0.114 4.114 29 C -0.109 4.109 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.414 0.586 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.028 0.972 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.064 0.936 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.089 0.911 48 H 0.036 0.964 49 H 0.074 0.926 50 H 0.068 0.932 51 H 0.058 0.942 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.132 22.811 -4.307 28.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.110 0.890 4 C -0.159 4.159 5 C -0.152 4.152 6 C -0.131 4.131 7 H 0.139 0.861 8 C 0.304 3.696 9 O -0.464 6.464 10 N -0.364 5.364 11 C 0.046 3.954 12 C -0.144 4.144 13 C -0.072 4.072 14 N -0.255 5.255 15 C -0.075 4.075 16 C 0.230 3.770 17 O -0.496 6.496 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.069 4.069 28 C -0.153 4.153 29 C -0.147 4.147 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.080 0.920 37 H 0.251 0.749 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.089 0.911 43 H 0.128 0.872 44 H 0.082 0.918 45 H 0.229 0.771 46 H 0.086 0.914 47 H 0.107 0.893 48 H 0.054 0.946 49 H 0.093 0.907 50 H 0.087 0.913 51 H 0.077 0.923 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.978 22.969 -4.401 28.900 hybrid contribution 0.254 -1.534 0.060 1.556 sum -16.724 21.435 -4.341 27.532 Atomic orbital electron populations 1.21757 0.94836 1.01416 1.02208 1.22125 0.95705 0.99456 0.93870 0.89023 1.22444 0.95359 0.99712 0.98337 1.22170 0.98921 1.02562 0.91509 1.22040 1.00486 0.92413 0.98120 0.86084 1.21211 0.80697 0.88897 0.78808 1.90667 1.48492 1.66526 1.40712 1.46008 1.18593 1.17436 1.54351 1.20860 0.97476 0.83460 0.93600 1.21688 0.98682 0.95493 0.98526 1.22095 0.97445 0.97174 0.90481 1.61507 1.38417 1.22908 1.02623 1.21725 0.95111 0.91320 0.99337 1.20699 0.87027 0.82072 0.87156 1.90448 1.68143 1.56881 1.34172 1.41942 1.29168 1.19187 1.30980 1.19669 1.08537 1.04677 1.13191 0.90152 1.26034 1.01564 0.95741 0.98011 1.69677 1.42794 1.14479 1.29326 0.84927 0.77704 0.77478 0.78220 1.19691 1.19712 1.19708 1.22117 0.93200 0.94975 0.96606 1.21842 1.00870 0.96516 0.96033 1.22380 0.93963 0.99830 0.98496 0.93754 0.92373 0.91657 0.89876 0.92788 0.88446 0.92020 0.74930 0.91560 0.89926 0.90523 0.95351 0.91062 0.87191 0.91842 0.77125 0.91394 0.89285 0.94607 0.90689 0.91322 0.92338 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.27 71.98 0.67 -0.93 16 2 C -0.09 -1.02 3.50 -9.50 -0.03 -1.05 16 3 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.12 -1.30 6.27 31.67 0.20 -1.10 16 5 C -0.11 -1.17 6.36 31.32 0.20 -0.97 16 6 C -0.11 -1.48 3.30 -10.81 -0.04 -1.51 16 7 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 8 C 0.52 10.70 6.90 87.66 0.61 11.30 16 9 O -0.58 -17.31 15.08 -3.03 -0.05 -17.36 16 10 N -0.71 -12.88 4.93 -442.14 -2.18 -15.06 16 11 C 0.15 3.45 2.52 45.07 0.11 3.57 16 12 C -0.11 -2.59 5.56 30.64 0.17 -2.42 16 13 C 0.06 1.80 5.11 86.32 0.44 2.24 16 14 N -0.53 -17.14 4.40 -900.93 -3.96 -21.10 16 15 C 0.06 1.98 5.45 85.56 0.47 2.44 16 16 C 0.44 20.98 7.46 87.66 0.65 21.64 16 17 O -0.61 -32.96 13.90 -3.04 -0.04 -33.01 16 18 N -0.58 -29.53 5.29 -306.98 -1.62 -31.16 16 19 C -0.33 -18.75 9.68 84.04 0.81 -17.93 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.92 -49.91 13.05 21.66 0.28 -49.63 16 23 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C 0.06 1.51 5.46 86.33 0.47 1.98 16 28 C -0.11 -2.66 5.68 30.65 0.17 -2.48 16 29 C -0.11 -1.65 5.59 31.68 0.18 -1.47 16 30 H 0.04 0.59 8.12 -2.39 -0.02 0.57 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.73 8.05 -2.39 -0.02 0.71 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.06 0.75 7.59 -2.39 -0.02 0.74 16 37 H 0.41 5.24 8.57 -92.71 -0.79 4.44 16 38 H 0.07 1.78 7.58 -2.38 -0.02 1.77 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 2.84 5.78 -2.39 -0.01 2.82 16 43 H 0.11 3.41 7.99 -2.38 -0.02 3.39 16 44 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 45 H 0.40 19.38 7.90 -92.71 -0.73 18.65 16 46 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 47 H 0.09 2.07 8.02 -2.39 -0.02 2.05 16 48 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 50 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.06 1.25 6.78 -2.39 -0.02 1.23 16 52 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -70.63 406.92 -0.60 -71.23 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.61 Total: 38.13 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: 5.55 Total: 13.01 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -7.48 Total: -116.94 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.09 Total: -50.37 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -70.63 -0.60 -71.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229462318.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.133 kcal (2) G-P(sol) polarization free energy of solvation -70.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds