Wall clock time and date at job start Tue Mar 31 2020 21:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.43435 * 2 1 4 4 C 1.54887 * 110.48498 * 122.54529 * 2 1 3 5 5 C 1.54888 * 102.74743 * 156.61963 * 4 2 1 6 6 C 1.54270 * 104.19563 * 322.05467 * 5 4 2 7 7 H 1.09002 * 110.03399 * 264.32570 * 6 5 4 8 8 C 1.50704 * 110.03228 * 142.94254 * 6 5 4 9 9 O 1.21277 * 120.00151 * 242.09096 * 8 6 5 10 10 N 1.34776 * 119.99953 * 62.09375 * 8 6 5 11 11 C 1.46497 * 120.00439 * 179.97438 * 10 8 6 12 12 C 1.53117 * 109.52210 * 274.87601 * 11 10 8 13 13 C 1.53041 * 109.27418 * 182.49897 * 12 11 10 14 14 N 1.46846 * 109.57374 * 59.08569 * 13 12 11 15 15 C 1.46902 * 110.99755 * 174.19378 * 14 13 12 16 16 C 1.50699 * 109.46917 * 294.20435 * 15 14 13 17 17 O 1.21295 * 120.00209 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00095 * 180.02562 * 16 15 14 19 19 C 1.37103 * 120.00271 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99613 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99648 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00366 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99350 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47383 * 90.00010 * 23 21 19 25 25 H 1.48506 * 109.46982 * 210.00029 * 23 21 19 26 26 H 1.48493 * 109.47421 * 329.99834 * 23 21 19 27 27 C 1.46842 * 111.19773 * 298.28673 * 14 13 12 28 28 C 1.53041 * 109.52333 * 61.74086 * 27 14 13 29 29 C 1.53869 * 106.63967 * 23.63572 * 6 5 4 30 30 H 1.09006 * 109.46929 * 298.91032 * 1 2 3 31 31 H 1.09004 * 109.47054 * 58.90791 * 1 2 3 32 32 H 1.08996 * 109.47262 * 178.90989 * 1 2 3 33 33 H 1.09004 * 110.75643 * 38.30509 * 4 2 1 34 34 H 1.09004 * 110.91436 * 275.00656 * 4 2 1 35 35 H 1.08998 * 110.48734 * 203.38147 * 5 4 2 36 36 H 1.09004 * 110.60036 * 80.78946 * 5 4 2 37 37 H 0.97010 * 119.99661 * 0.02562 * 10 8 6 38 38 H 1.08999 * 109.52038 * 34.99928 * 11 10 8 39 39 H 1.08998 * 109.50398 * 302.37837 * 12 11 10 40 40 H 1.09004 * 109.50666 * 62.49282 * 12 11 10 41 41 H 1.08998 * 109.41164 * 299.06573 * 13 12 11 42 42 H 1.09009 * 109.46214 * 179.12834 * 13 12 11 43 43 H 1.08997 * 109.47440 * 54.20647 * 15 14 13 44 44 H 1.09004 * 109.47237 * 174.20977 * 15 14 13 45 45 H 0.97003 * 120.00005 * 359.97438 * 18 16 15 46 46 H 0.97005 * 119.99672 * 180.02562 * 22 21 19 47 47 H 1.09009 * 109.46443 * 301.73143 * 27 14 13 48 48 H 1.08995 * 109.46548 * 181.76152 * 27 14 13 49 49 H 1.09001 * 109.50127 * 180.87637 * 28 27 14 50 50 H 1.09007 * 109.49696 * 60.76748 * 28 27 14 51 51 H 1.08999 * 110.03405 * 119.26051 * 29 6 5 52 52 H 1.08996 * 110.03529 * 240.68999 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7805 1.2231 5 6 3.4906 -1.1971 0.7614 6 6 3.3165 -1.5415 -0.7323 7 1 3.1691 -2.6147 -0.8533 8 6 4.5285 -1.0963 -1.5094 9 8 4.4167 -0.2602 -2.3808 10 7 5.7367 -1.6274 -1.2362 11 6 6.9148 -1.1951 -1.9920 12 6 7.0181 -2.0061 -3.2867 13 6 8.2840 -1.5939 -4.0414 14 7 9.4607 -1.8334 -3.1960 15 6 10.7026 -1.5784 -3.9381 16 6 10.8407 -2.5880 -5.0483 17 8 9.9881 -3.4362 -5.2063 18 7 11.9115 -2.5485 -5.8658 19 6 12.0369 -3.4666 -6.8763 20 1 11.2777 -4.2218 -7.0168 21 6 13.1411 -3.4261 -7.7186 22 7 14.0650 -2.5075 -7.5472 23 14 13.3115 -4.6767 -9.0958 24 1 12.6658 -4.1504 -10.3251 25 1 14.7509 -4.9276 -9.3613 26 1 12.6534 -5.9463 -8.6958 27 6 9.4059 -1.0282 -1.9693 28 6 8.1742 -1.4245 -1.1520 29 6 2.0704 -0.7803 -1.2175 30 1 -0.3633 0.4968 0.8997 31 1 -0.3633 0.5307 -0.8801 32 1 -0.3633 -1.0274 -0.0196 33 1 1.4580 -1.6584 1.4242 34 1 2.1250 -0.1383 2.1022 35 1 3.8315 -2.0707 1.3170 36 1 4.1916 -0.3712 0.8832 37 1 5.8260 -2.2965 -0.5395 38 1 6.8250 -0.1357 -2.2320 39 1 7.0675 -3.0684 -3.0477 40 1 6.1436 -1.8127 -3.9080 41 1 8.2271 -0.5349 -4.2931 42 1 8.3687 -2.1805 -4.9563 43 1 10.6733 -0.5745 -4.3614 44 1 11.5536 -1.6631 -3.2622 45 1 12.5931 -1.8699 -5.7398 46 1 14.8357 -2.4791 -8.1356 47 1 9.3436 0.0283 -2.2307 48 1 10.3052 -1.2037 -1.3791 49 1 8.1253 -0.8158 -0.2491 50 1 8.2425 -2.4775 -0.8784 51 1 2.3424 -0.0883 -2.0146 52 1 1.3183 -1.4840 -1.5741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229462320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:42 Heat of formation + Delta-G solvation = -93.087607 kcal Electronic energy + Delta-G solvation = -29336.077839 eV Core-core repulsion = 25334.109140 eV Total energy + Delta-G solvation = -4001.968700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54825 -39.17631 -38.02780 -37.27502 -34.97725 -33.83877 -32.35166 -31.31408 -30.97422 -30.68113 -29.21377 -27.21608 -25.64689 -24.46149 -23.12716 -22.91692 -21.67367 -20.56351 -20.12418 -19.34628 -19.16479 -17.83727 -17.58746 -16.49926 -15.94794 -15.68254 -15.51111 -15.19683 -14.91945 -14.64194 -14.36328 -14.17046 -13.97845 -13.83191 -13.73585 -13.44002 -13.31869 -13.13072 -13.01696 -12.34445 -12.28677 -12.00865 -11.87293 -11.66675 -11.59859 -11.48097 -11.22496 -11.16004 -11.13892 -11.06993 -11.04315 -10.94455 -10.77018 -10.61436 -10.47613 -10.37292 -10.20055 -9.79822 -9.46435 -9.08882 -8.40856 -7.95576 -7.81581 -6.39925 -3.80543 2.52296 3.02191 3.19061 3.27601 3.33503 3.92484 4.00735 4.11983 4.17417 4.26225 4.35712 4.63664 4.77953 4.88943 4.93828 5.00193 5.06706 5.08387 5.09233 5.18682 5.22167 5.25686 5.27282 5.36442 5.41919 5.46324 5.53882 5.57246 5.61314 5.65529 5.68432 5.71347 5.80136 5.82223 5.83005 5.85908 6.00028 6.02486 6.04586 6.10705 6.14186 6.29191 6.35167 6.50783 6.57576 7.30508 7.39553 7.45406 7.57025 8.08608 8.11886 8.64062 9.20183 9.56779 10.08723 10.77846 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029704 B = 0.001798 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.416434 B =15571.422027 C =16088.385216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.119 4.119 5 C -0.115 4.115 6 C -0.114 4.114 7 H 0.098 0.902 8 C 0.518 3.482 9 O -0.538 6.538 10 N -0.724 5.724 11 C 0.142 3.858 12 C -0.119 4.119 13 C 0.055 3.945 14 N -0.516 5.516 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.058 3.942 28 C -0.119 4.119 29 C -0.115 4.115 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.399 0.601 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.023 0.977 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.031 0.969 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.078 0.922 51 H 0.090 0.910 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.729 5.519 19.708 28.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.157 4.157 5 C -0.153 4.153 6 C -0.136 4.136 7 H 0.116 0.884 8 C 0.304 3.696 9 O -0.415 6.415 10 N -0.374 5.374 11 C 0.038 3.962 12 C -0.158 4.158 13 C -0.073 4.073 14 N -0.240 5.240 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.071 4.071 28 C -0.158 4.158 29 C -0.153 4.153 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.233 0.767 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.041 0.959 42 H 0.124 0.876 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.050 0.950 48 H 0.097 0.903 49 H 0.087 0.913 50 H 0.096 0.904 51 H 0.108 0.892 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.202 5.092 18.987 28.188 hybrid contribution 0.812 0.319 -0.543 1.028 sum -19.389 5.410 18.444 27.302 Atomic orbital electron populations 1.21798 0.94910 1.01775 1.01645 1.21997 0.95531 0.99498 0.94598 0.90750 1.22571 0.95459 1.00000 0.97630 1.22342 0.98138 1.01695 0.93076 1.21957 0.93852 1.01983 0.95771 0.88415 1.20596 0.84515 0.81186 0.83310 1.90678 1.85329 1.32844 1.32665 1.46105 1.07610 1.44119 1.39561 1.21113 0.83680 0.99569 0.91812 1.21905 0.97581 1.00777 0.95552 1.22214 0.88454 0.98702 0.97902 1.61538 1.01626 1.55237 1.05648 1.21833 0.92902 0.97466 0.96308 1.19751 0.84371 0.87987 0.84955 1.90483 1.42242 1.39637 1.73753 1.41872 1.20394 1.30094 1.27784 1.19698 1.06819 1.09874 1.06390 0.87926 1.25250 0.95478 0.98019 0.99202 1.69613 1.11095 1.34101 1.39547 0.85865 0.77280 0.80544 0.80638 1.20457 1.20951 1.19438 1.22028 0.97955 0.94943 0.92156 1.21823 0.93297 1.02917 0.97734 1.22264 0.94793 0.99422 0.98789 0.92756 0.92602 0.92614 0.91156 0.91403 0.90873 0.91146 0.76731 0.89927 0.90777 0.91483 0.95895 0.87553 0.93471 0.89325 0.77507 0.91915 0.95033 0.90321 0.91254 0.90377 0.89176 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.13 37.16 0.34 -0.51 16 2 C -0.10 -0.68 3.46 -88.90 -0.31 -0.99 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.12 -0.68 6.33 -24.74 -0.16 -0.84 16 5 C -0.11 -0.70 6.29 -25.07 -0.16 -0.85 16 6 C -0.11 -0.90 3.29 -90.65 -0.30 -1.20 16 7 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 8 C 0.52 5.79 6.97 -10.98 -0.08 5.71 16 9 O -0.54 -8.26 14.87 5.56 0.08 -8.18 16 10 N -0.72 -7.05 5.02 -53.69 -0.27 -7.32 16 11 C 0.14 1.70 2.52 -67.82 -0.17 1.53 16 12 C -0.12 -1.74 5.68 -26.65 -0.15 -1.89 16 13 C 0.06 0.94 5.10 -3.83 -0.02 0.92 16 14 N -0.52 -8.54 4.40 -236.11 -1.04 -9.57 16 15 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 16 C 0.44 10.48 7.46 -10.98 -0.08 10.39 16 17 O -0.58 -15.47 13.90 5.54 0.08 -15.39 16 18 N -0.56 -14.34 5.29 -10.96 -0.06 -14.40 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 23 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.06 0.72 5.46 -3.83 -0.02 0.70 16 28 C -0.12 -1.24 5.57 -26.65 -0.15 -1.39 16 29 C -0.11 -0.97 5.98 -25.56 -0.15 -1.12 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.30 8.11 -51.93 -0.42 -0.12 16 33 H 0.07 0.36 8.06 -51.93 -0.42 -0.06 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.49 7.85 -51.93 -0.41 0.08 16 37 H 0.40 2.81 8.59 -40.82 -0.35 2.46 16 38 H 0.08 1.13 7.58 -51.93 -0.39 0.73 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.11 2.20 5.78 -51.92 -0.30 1.90 16 43 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.42 7.99 -51.93 -0.41 1.00 16 45 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.03 0.38 8.14 -51.92 -0.42 -0.04 16 48 H 0.08 0.89 8.01 -51.93 -0.42 0.47 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 51 H 0.09 1.00 6.39 -51.93 -0.33 0.67 16 52 H 0.07 0.52 7.82 -51.93 -0.41 0.11 16 LS Contribution 406.63 15.07 6.13 6.13 Total: -1.00 -32.65 406.63 -10.24 -42.89 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -9.19 Total: 10.33 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.67 Total: 3.27 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.64 Total: -55.19 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: 0.16 Total: -23.57 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.65 -10.24 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229462320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.202 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds