Wall clock time and date at job start Tue Mar 31 2020 21:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.43435 * 2 1 4 4 C 1.54887 * 110.48498 * 122.54529 * 2 1 3 5 5 C 1.54888 * 102.74743 * 156.61963 * 4 2 1 6 6 C 1.54270 * 104.19563 * 322.05467 * 5 4 2 7 7 H 1.09002 * 110.03399 * 264.32570 * 6 5 4 8 8 C 1.50704 * 110.03228 * 142.94254 * 6 5 4 9 9 O 1.21277 * 120.00151 * 242.09096 * 8 6 5 10 10 N 1.34776 * 119.99953 * 62.09375 * 8 6 5 11 11 C 1.46497 * 120.00439 * 179.97438 * 10 8 6 12 12 C 1.53117 * 109.52210 * 274.87601 * 11 10 8 13 13 C 1.53041 * 109.27418 * 182.49897 * 12 11 10 14 14 N 1.46846 * 109.57374 * 59.08569 * 13 12 11 15 15 C 1.46902 * 110.99755 * 174.19378 * 14 13 12 16 16 C 1.50699 * 109.46917 * 294.20435 * 15 14 13 17 17 O 1.21295 * 120.00209 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00095 * 180.02562 * 16 15 14 19 19 C 1.37103 * 120.00271 * 180.02562 * 18 16 15 20 20 H 1.07999 * 119.99613 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99648 * 180.02562 * 19 18 16 22 22 N 1.31407 * 120.00366 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99350 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47383 * 90.00010 * 23 21 19 25 25 H 1.48506 * 109.46982 * 210.00029 * 23 21 19 26 26 H 1.48493 * 109.47421 * 329.99834 * 23 21 19 27 27 C 1.46842 * 111.19773 * 298.28673 * 14 13 12 28 28 C 1.53041 * 109.52333 * 61.74086 * 27 14 13 29 29 C 1.53869 * 106.63967 * 23.63572 * 6 5 4 30 30 H 1.09006 * 109.46929 * 298.91032 * 1 2 3 31 31 H 1.09004 * 109.47054 * 58.90791 * 1 2 3 32 32 H 1.08996 * 109.47262 * 178.90989 * 1 2 3 33 33 H 1.09004 * 110.75643 * 38.30509 * 4 2 1 34 34 H 1.09004 * 110.91436 * 275.00656 * 4 2 1 35 35 H 1.08998 * 110.48734 * 203.38147 * 5 4 2 36 36 H 1.09004 * 110.60036 * 80.78946 * 5 4 2 37 37 H 0.97010 * 119.99661 * 0.02562 * 10 8 6 38 38 H 1.08999 * 109.52038 * 34.99928 * 11 10 8 39 39 H 1.08998 * 109.50398 * 302.37837 * 12 11 10 40 40 H 1.09004 * 109.50666 * 62.49282 * 12 11 10 41 41 H 1.08998 * 109.41164 * 299.06573 * 13 12 11 42 42 H 1.09009 * 109.46214 * 179.12834 * 13 12 11 43 43 H 1.08997 * 109.47440 * 54.20647 * 15 14 13 44 44 H 1.09004 * 109.47237 * 174.20977 * 15 14 13 45 45 H 0.97003 * 120.00005 * 359.97438 * 18 16 15 46 46 H 0.97005 * 119.99672 * 180.02562 * 22 21 19 47 47 H 1.09009 * 109.46443 * 301.73143 * 27 14 13 48 48 H 1.08995 * 109.46548 * 181.76152 * 27 14 13 49 49 H 1.09001 * 109.50127 * 180.87637 * 28 27 14 50 50 H 1.09007 * 109.49696 * 60.76748 * 28 27 14 51 51 H 1.08999 * 110.03405 * 119.26051 * 29 6 5 52 52 H 1.08996 * 110.03529 * 240.68999 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7805 1.2231 5 6 3.4906 -1.1971 0.7614 6 6 3.3165 -1.5415 -0.7323 7 1 3.1691 -2.6147 -0.8533 8 6 4.5285 -1.0963 -1.5094 9 8 4.4167 -0.2602 -2.3808 10 7 5.7367 -1.6274 -1.2362 11 6 6.9148 -1.1951 -1.9920 12 6 7.0181 -2.0061 -3.2867 13 6 8.2840 -1.5939 -4.0414 14 7 9.4607 -1.8334 -3.1960 15 6 10.7026 -1.5784 -3.9381 16 6 10.8407 -2.5880 -5.0483 17 8 9.9881 -3.4362 -5.2063 18 7 11.9115 -2.5485 -5.8658 19 6 12.0369 -3.4666 -6.8763 20 1 11.2777 -4.2218 -7.0168 21 6 13.1411 -3.4261 -7.7186 22 7 14.0650 -2.5075 -7.5472 23 14 13.3115 -4.6767 -9.0958 24 1 12.6658 -4.1504 -10.3251 25 1 14.7509 -4.9276 -9.3613 26 1 12.6534 -5.9463 -8.6958 27 6 9.4059 -1.0282 -1.9693 28 6 8.1742 -1.4245 -1.1520 29 6 2.0704 -0.7803 -1.2175 30 1 -0.3633 0.4968 0.8997 31 1 -0.3633 0.5307 -0.8801 32 1 -0.3633 -1.0274 -0.0196 33 1 1.4580 -1.6584 1.4242 34 1 2.1250 -0.1383 2.1022 35 1 3.8315 -2.0707 1.3170 36 1 4.1916 -0.3712 0.8832 37 1 5.8260 -2.2965 -0.5395 38 1 6.8250 -0.1357 -2.2320 39 1 7.0675 -3.0684 -3.0477 40 1 6.1436 -1.8127 -3.9080 41 1 8.2271 -0.5349 -4.2931 42 1 8.3687 -2.1805 -4.9563 43 1 10.6733 -0.5745 -4.3614 44 1 11.5536 -1.6631 -3.2622 45 1 12.5931 -1.8699 -5.7398 46 1 14.8357 -2.4791 -8.1356 47 1 9.3436 0.0283 -2.2307 48 1 10.3052 -1.2037 -1.3791 49 1 8.1253 -0.8158 -0.2491 50 1 8.2425 -2.4775 -0.8784 51 1 2.3424 -0.0883 -2.0146 52 1 1.3183 -1.4840 -1.5741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229462320.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:39 Heat of formation + Delta-G solvation = -115.975811 kcal Electronic energy + Delta-G solvation = -29337.070346 eV Core-core repulsion = 25334.109140 eV Total energy + Delta-G solvation = -4002.961207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.44243 -40.55447 -39.31868 -38.29151 -36.23606 -35.72186 -33.39825 -33.09626 -31.88391 -31.82988 -29.79197 -28.67672 -26.65572 -25.91917 -24.24840 -24.03385 -22.49161 -21.30280 -21.06665 -20.95071 -20.15342 -19.86783 -18.38176 -17.73780 -17.42479 -16.71396 -16.49775 -16.45600 -16.21705 -15.98623 -15.62042 -15.38253 -15.28803 -14.96898 -14.80395 -14.50207 -14.34010 -14.23973 -13.81802 -13.73562 -13.50205 -13.19269 -12.95942 -12.83465 -12.78985 -12.64226 -12.43334 -12.34065 -12.19774 -12.18159 -12.11639 -11.85782 -11.73531 -11.62558 -11.56852 -11.47224 -11.43864 -11.33109 -10.72721 -10.29194 -10.05154 -9.96449 -9.21187 -8.46072 -5.94456 1.37484 1.41052 1.53767 1.64901 2.06557 2.18033 2.28505 2.76197 3.20708 3.37991 3.52154 3.60557 3.71356 3.81645 3.87231 4.06712 4.15309 4.19336 4.29265 4.36070 4.36388 4.46199 4.47790 4.52290 4.55579 4.56170 4.60123 4.65691 4.73361 4.74335 4.75792 4.90554 4.97637 4.97704 5.04558 5.07806 5.10965 5.12162 5.17034 5.27819 5.30390 5.35261 5.41332 5.41829 5.55888 5.56392 5.88906 6.07340 6.24368 6.59481 6.61821 7.13932 7.29072 7.57714 8.13880 8.71334 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029704 B = 0.001798 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.416434 B =15571.422027 C =16088.385216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 H 0.059 0.941 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.109 4.109 7 H 0.117 0.883 8 C 0.513 3.487 9 O -0.587 6.587 10 N -0.710 5.710 11 C 0.151 3.849 12 C -0.110 4.110 13 C 0.061 3.939 14 N -0.529 5.529 15 C 0.057 3.943 16 C 0.440 3.560 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.054 3.946 28 C -0.109 4.109 29 C -0.118 4.118 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.024 0.976 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.116 0.884 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.039 0.961 48 H 0.100 0.900 49 H 0.101 0.899 50 H 0.083 0.917 51 H 0.056 0.944 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.783 5.214 22.390 30.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.078 0.922 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.130 4.130 7 H 0.135 0.865 8 C 0.301 3.699 9 O -0.467 6.467 10 N -0.361 5.361 11 C 0.046 3.954 12 C -0.149 4.149 13 C -0.068 4.068 14 N -0.254 5.254 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.500 6.500 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.198 1.198 27 C -0.074 4.074 28 C -0.147 4.147 29 C -0.156 4.156 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.253 0.747 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.057 0.943 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.102 0.898 51 H 0.075 0.925 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.244 4.787 21.720 30.075 hybrid contribution 0.781 0.442 -1.389 1.653 sum -19.464 5.229 20.331 28.628 Atomic orbital electron populations 1.21782 0.94059 1.02291 1.01775 1.21990 0.96272 0.98752 0.94737 0.92196 1.22567 0.95173 1.00370 0.97006 1.22360 0.98337 1.02473 0.91535 1.22019 0.91664 1.02784 0.96582 0.86458 1.21245 0.85560 0.80333 0.82745 1.90666 1.86067 1.35097 1.34876 1.45951 1.06660 1.44115 1.39363 1.20881 0.85497 0.97948 0.91108 1.21772 0.95639 1.00734 0.96717 1.22008 0.90063 0.97828 0.96905 1.61520 1.00486 1.56919 1.06508 1.21733 0.94759 0.95913 0.94992 1.20811 0.82885 0.88205 0.85320 1.90463 1.43245 1.41473 1.74806 1.41937 1.21237 1.30062 1.28004 1.19650 1.07260 1.10820 1.08455 0.90404 1.26013 0.94697 0.99658 1.00890 1.69672 1.11315 1.34894 1.40260 0.84943 0.77793 0.77967 0.77715 1.19829 1.19439 1.19819 1.22218 0.99973 0.94760 0.90406 1.21789 0.91005 1.03928 0.97966 1.22259 0.95495 0.99205 0.98618 0.91824 0.93360 0.91832 0.89851 0.90495 0.88320 0.91988 0.74685 0.91579 0.91475 0.93204 0.95783 0.92014 0.91916 0.86557 0.77042 0.91347 0.94278 0.88193 0.88025 0.89803 0.92494 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.13 71.98 0.66 -0.85 16 2 C -0.10 -1.29 3.46 -9.68 -0.03 -1.33 16 3 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 4 C -0.11 -1.00 6.33 31.88 0.20 -0.80 16 5 C -0.11 -1.03 6.29 31.67 0.20 -0.83 16 6 C -0.11 -1.57 3.29 -10.81 -0.04 -1.60 16 7 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 8 C 0.51 11.24 6.97 87.66 0.61 11.85 16 9 O -0.59 -18.72 14.87 -3.02 -0.04 -18.76 16 10 N -0.71 -12.74 5.02 -442.18 -2.22 -14.96 16 11 C 0.15 3.43 2.52 45.07 0.11 3.55 16 12 C -0.11 -3.27 5.68 30.65 0.17 -3.09 16 13 C 0.06 2.12 5.10 86.33 0.44 2.56 16 14 N -0.53 -17.06 4.40 -900.91 -3.96 -21.02 16 15 C 0.06 2.00 5.45 85.56 0.47 2.46 16 16 C 0.44 21.26 7.46 87.66 0.65 21.91 16 17 O -0.61 -34.27 13.90 -3.08 -0.04 -34.31 16 18 N -0.57 -29.88 5.29 -306.98 -1.62 -31.51 16 19 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 21 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 22 N -0.92 -50.11 13.05 21.66 0.28 -49.82 16 23 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 C 0.05 1.20 5.46 86.33 0.47 1.67 16 28 C -0.11 -1.93 5.57 30.64 0.17 -1.76 16 29 C -0.12 -1.97 5.98 31.36 0.19 -1.78 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.58 8.11 -2.39 -0.02 0.56 16 33 H 0.08 0.55 8.06 -2.39 -0.02 0.53 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.06 0.71 7.85 -2.39 -0.02 0.69 16 37 H 0.42 4.65 8.59 -92.70 -0.80 3.86 16 38 H 0.07 1.78 7.58 -2.39 -0.02 1.76 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 2.72 5.78 -2.38 -0.01 2.70 16 43 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 44 H 0.12 3.45 7.99 -2.38 -0.02 3.43 16 45 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 46 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 47 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 48 H 0.10 1.85 8.01 -2.39 -0.02 1.83 16 49 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 51 H 0.06 1.35 6.39 -2.39 -0.02 1.34 16 52 H 0.08 1.11 7.82 -2.39 -0.02 1.09 16 Total: -1.00 -74.66 406.63 -0.64 -75.30 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: -0.61 Total: 36.09 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 5.56 Total: 13.43 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -7.52 Total: -117.31 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.09 Total: -53.08 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -74.66 -0.64 -75.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229462320.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.674 kcal (2) G-P(sol) polarization free energy of solvation -74.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds