Wall clock time and date at job start Tue Mar 31 2020 22:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08998 * 115.54375 * 2 1 4 4 C 1.52998 * 117.49754 * 145.66312 * 2 1 3 5 5 C 1.52996 * 117.49906 * 214.28855 * 2 1 3 6 6 H 1.08990 * 117.49939 * 145.01978 * 5 2 1 7 7 C 1.50702 * 117.49834 * 0.02562 * 5 2 1 8 8 O 1.21282 * 120.00262 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00122 * 180.02562 * 7 5 2 10 10 C 1.46923 * 120.62709 * 359.71818 * 9 7 5 11 11 C 1.53627 * 108.54359 * 126.37049 * 10 9 7 12 12 C 1.53041 * 109.23911 * 54.85648 * 11 10 9 13 13 C 1.53001 * 109.44672 * 178.49967 * 12 11 10 14 14 N 1.46901 * 109.46741 * 185.49285 * 13 12 11 15 15 C 1.46899 * 111.00286 * 75.83543 * 14 13 12 16 16 C 1.46905 * 110.99693 * 199.78238 * 14 13 12 17 17 C 1.50702 * 109.47186 * 169.99855 * 16 14 13 18 18 O 1.21288 * 119.99937 * 0.02562 * 17 16 14 19 19 N 1.34774 * 119.99866 * 179.97438 * 17 16 14 20 20 C 1.37098 * 119.99818 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00060 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99861 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99795 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00214 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.46942 * 90.00219 * 24 22 20 26 26 H 1.48496 * 109.47084 * 210.00270 * 24 22 20 27 27 H 1.48498 * 109.47047 * 329.99995 * 24 22 20 28 28 C 1.53042 * 109.53645 * 298.50762 * 12 11 10 29 29 C 1.46927 * 120.63251 * 180.02562 * 9 7 5 30 30 H 1.09003 * 109.46903 * 325.72645 * 1 2 3 31 31 H 1.08996 * 109.46663 * 205.72439 * 1 2 3 32 32 H 1.08995 * 109.47120 * 85.72492 * 1 2 3 33 33 H 1.08990 * 117.50038 * 214.98139 * 4 2 1 34 34 H 1.09007 * 117.49873 * 0.02562 * 4 2 1 35 35 H 1.09001 * 109.58587 * 246.20400 * 10 9 7 36 36 H 1.08998 * 109.59024 * 6.62653 * 10 9 7 37 37 H 1.08995 * 109.63164 * 294.86167 * 11 10 9 38 38 H 1.09005 * 109.43048 * 174.71863 * 11 10 9 39 39 H 1.09003 * 109.46270 * 58.53033 * 12 11 10 40 40 H 1.09000 * 109.46878 * 305.49094 * 13 12 11 41 41 H 1.09001 * 109.47526 * 65.49173 * 13 12 11 42 42 H 1.08994 * 109.47424 * 65.77626 * 15 14 13 43 43 H 1.08997 * 109.47163 * 185.78413 * 15 14 13 44 44 H 1.09009 * 109.46432 * 305.77748 * 15 14 13 45 45 H 1.09005 * 109.47091 * 290.00316 * 16 14 13 46 46 H 1.09000 * 109.47440 * 49.99775 * 16 14 13 47 47 H 0.97002 * 120.00219 * 0.02562 * 19 17 16 48 48 H 0.97004 * 119.99581 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.50072 * 301.41830 * 28 12 11 50 50 H 1.09007 * 109.49570 * 181.31555 * 28 12 11 51 51 H 1.09005 * 109.58293 * 353.36431 * 29 9 7 52 52 H 1.08987 * 109.58942 * 113.79318 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1206 0.7655 5 6 2.2366 -1.1213 -0.7645 6 1 3.1715 -0.8756 -1.2679 7 6 1.3721 -2.1408 -1.4605 8 8 0.1639 -2.0535 -1.4009 9 7 1.9416 -3.1503 -2.1482 10 6 3.4037 -3.2666 -2.2337 11 6 3.8095 -4.6752 -1.7742 12 6 3.0475 -5.7141 -2.6000 13 6 3.4759 -7.1192 -2.1719 14 7 2.8450 -8.1126 -3.0511 15 6 3.5103 -8.1552 -4.3601 16 6 2.8343 -9.4404 -2.4227 17 6 1.9715 -10.3729 -3.2332 18 8 1.4201 -9.9711 -4.2360 19 7 1.8134 -11.6536 -2.8444 20 6 1.0289 -12.5021 -3.5821 21 1 0.5378 -12.1443 -4.4750 22 6 0.8654 -13.8223 -3.1809 23 7 0.1138 -14.6358 -3.8883 24 14 1.7153 -14.4414 -1.6368 25 1 0.8254 -14.2360 -0.4659 26 1 2.0148 -15.8885 -1.7831 27 1 2.9811 -13.6919 -1.4342 28 6 1.5436 -5.5475 -2.3703 29 6 1.1121 -4.1517 -2.8324 30 1 -0.3633 0.8493 0.5787 31 1 -0.3632 -0.9258 0.4460 32 1 -0.3633 0.0766 -1.0248 33 1 3.1715 -0.8746 1.2687 34 1 1.6112 -1.8582 1.2688 35 1 3.7232 -3.1091 -3.2638 36 1 3.8680 -2.5219 -1.5871 37 1 3.5671 -4.8002 -0.7189 38 1 4.8814 -4.8096 -1.9202 39 1 3.2712 -5.5727 -3.6574 40 1 4.5600 -7.2063 -2.2442 41 1 3.1651 -7.2959 -1.1421 42 1 4.5297 -8.5212 -4.2379 43 1 2.9618 -8.8224 -5.0249 44 1 3.5330 -7.1532 -4.7888 45 1 3.8513 -9.8306 -2.3806 46 1 2.4337 -9.3609 -1.4121 47 1 2.2547 -11.9751 -2.0426 48 1 0.0000 -15.5576 -3.6084 49 1 1.3224 -5.6644 -1.3093 50 1 1.0026 -6.3027 -2.9406 51 1 0.0637 -3.9912 -2.5807 52 1 1.2489 -4.0647 -3.9101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267715082.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:33 Heat of formation + Delta-G solvation = -35.870526 kcal Electronic energy + Delta-G solvation = -29626.942268 eV Core-core repulsion = 25627.454687 eV Total energy + Delta-G solvation = -3999.487581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.71773 -39.06815 -38.28905 -36.84522 -36.09950 -33.97555 -33.14115 -31.66245 -31.35652 -29.00852 -28.30181 -27.56082 -25.37693 -24.68281 -23.82765 -22.83421 -21.73408 -21.16117 -20.13050 -19.34712 -18.84080 -18.22340 -17.70849 -16.15687 -15.95621 -15.73478 -15.39934 -15.21749 -15.03533 -14.90685 -14.45823 -14.24758 -13.95714 -13.70803 -13.40261 -13.38847 -13.28456 -13.06101 -12.92303 -12.82305 -12.46957 -12.40520 -12.33836 -11.97397 -11.81374 -11.76895 -11.49383 -11.43175 -11.32050 -11.02721 -10.85916 -10.71317 -10.59923 -10.58218 -10.45988 -10.31390 -9.97109 -9.68849 -9.53415 -8.83365 -8.55406 -8.17263 -7.92584 -6.30453 -3.81661 2.27045 2.73062 3.02125 3.06846 3.14918 3.44961 3.75005 3.89757 4.10544 4.13249 4.29252 4.46362 4.53368 4.61205 4.67782 4.71632 4.83734 4.91988 5.03270 5.11953 5.19838 5.22572 5.23905 5.32563 5.38113 5.42602 5.44215 5.51957 5.56537 5.60127 5.62844 5.69918 5.71496 5.76312 5.82292 5.83697 5.84570 5.89802 5.95312 6.02330 6.10982 6.25637 6.31456 6.50245 6.53751 7.18006 7.20091 7.33168 7.59590 8.00438 8.15666 8.61229 8.96298 9.43460 9.84854 10.82707 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021564 B = 0.001984 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.165769 B =14110.698442 C =14359.363283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 H 0.110 0.890 4 C -0.150 4.150 5 C -0.195 4.195 6 H 0.122 0.878 7 C 0.543 3.457 8 O -0.537 6.537 9 N -0.608 5.608 10 C 0.109 3.891 11 C -0.129 4.129 12 C -0.080 4.080 13 C 0.059 3.941 14 N -0.516 5.516 15 C 0.021 3.979 16 C 0.043 3.957 17 C 0.453 3.547 18 O -0.559 6.559 19 N -0.592 5.592 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.120 4.120 29 C 0.110 3.890 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.014 0.986 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.060 0.940 50 H 0.096 0.904 51 H 0.091 0.909 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.662 26.582 9.474 30.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.138 4.138 3 H 0.128 0.872 4 C -0.188 4.188 5 C -0.216 4.216 6 H 0.140 0.860 7 C 0.332 3.668 8 O -0.414 6.414 9 N -0.341 5.341 10 C -0.014 4.014 11 C -0.168 4.168 12 C -0.099 4.099 13 C -0.070 4.070 14 N -0.240 5.240 15 C -0.126 4.126 16 C -0.088 4.088 17 C 0.239 3.761 18 O -0.440 6.440 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.158 4.158 29 C -0.012 4.012 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.088 0.912 42 H 0.032 0.968 43 H 0.114 0.886 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.079 0.921 50 H 0.114 0.886 51 H 0.109 0.891 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.041 26.801 8.694 29.911 hybrid contribution 1.810 -1.110 1.291 2.485 sum 11.851 25.691 9.985 30.003 Atomic orbital electron populations 1.21365 0.91403 1.01470 1.02638 1.22384 0.96705 0.93465 1.01288 0.87219 1.23077 1.03078 1.01956 0.90670 1.22313 1.02060 1.01344 0.95898 0.86022 1.19662 0.87934 0.81085 0.78164 1.90701 1.14545 1.74671 1.61480 1.48126 1.07106 1.26954 1.51926 1.21839 0.79967 0.97876 1.01736 1.22030 1.00160 0.94016 1.00609 1.21105 0.95533 0.93255 0.99984 1.22188 0.96067 0.91830 0.96881 1.61514 1.54271 1.04925 1.03278 1.22580 0.95855 1.02443 0.91762 1.21927 0.98689 0.89715 0.98493 1.19653 0.86130 0.82505 0.87797 1.90519 1.50778 1.75569 1.27151 1.42221 1.45637 1.09746 1.25596 1.19421 1.24115 0.90660 1.09007 0.86275 1.25040 0.97293 0.95870 0.98027 1.69626 1.37882 1.06076 1.38612 0.86675 0.79745 0.79406 0.83565 1.19615 1.20225 1.19590 1.21878 0.95824 0.95981 1.02141 1.21715 0.96167 0.87209 0.96081 0.93306 0.91710 0.91366 0.87882 0.88205 0.91344 0.89700 0.91347 0.90839 0.90781 0.94918 0.91172 0.96778 0.88554 0.92167 0.93522 0.89414 0.79780 0.91649 0.92107 0.88588 0.89056 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 8.43 37.16 0.31 -0.71 16 2 C -0.12 -0.89 6.41 -90.62 -0.58 -1.47 16 3 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.15 -1.00 9.88 -26.73 -0.26 -1.26 16 5 C -0.20 -1.49 4.97 -91.77 -0.46 -1.95 16 6 H 0.12 0.67 6.81 -51.93 -0.35 0.32 16 7 C 0.54 5.91 7.46 -10.98 -0.08 5.83 16 8 O -0.54 -7.61 12.52 5.56 0.07 -7.54 16 9 N -0.61 -5.89 2.97 -172.48 -0.51 -6.40 16 10 C 0.11 0.74 6.33 -3.49 -0.02 0.72 16 11 C -0.13 -0.93 5.38 -26.38 -0.14 -1.07 16 12 C -0.08 -0.77 2.21 -90.58 -0.20 -0.97 16 13 C 0.06 0.65 4.39 -3.82 -0.02 0.64 16 14 N -0.52 -7.77 3.88 -244.36 -0.95 -8.72 16 15 C 0.02 0.32 9.03 60.06 0.54 0.86 16 16 C 0.04 0.71 5.43 -4.97 -0.03 0.68 16 17 C 0.45 10.14 7.52 -10.99 -0.08 10.06 16 18 O -0.56 -14.61 13.88 5.55 0.08 -14.53 16 19 N -0.59 -14.03 5.09 -10.96 -0.06 -14.08 16 20 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.78 13.96 55.50 0.77 -25.00 16 24 Si 0.88 19.36 27.74 -169.99 -4.71 14.65 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 27 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 28 C -0.12 -1.35 5.27 -26.59 -0.14 -1.49 16 29 C 0.11 1.20 6.43 -3.69 -0.02 1.18 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.70 7.02 -51.93 -0.36 0.34 16 32 H 0.07 0.73 7.26 -51.93 -0.38 0.36 16 33 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.43 5.67 -51.93 -0.29 0.13 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.75 6.69 -51.93 -0.35 0.40 16 40 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 41 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 42 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 43 H 0.10 1.81 5.91 -51.93 -0.31 1.51 16 44 H 0.06 0.77 6.65 -51.92 -0.35 0.43 16 45 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 46 H 0.09 1.27 7.83 -51.93 -0.41 0.86 16 47 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 48 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 50 H 0.10 1.32 7.73 -51.92 -0.40 0.92 16 51 H 0.09 1.15 7.01 -51.93 -0.36 0.78 16 52 H 0.07 0.69 8.14 -51.94 -0.42 0.27 16 LS Contribution 400.72 15.07 6.04 6.04 Total: -1.00 -33.41 400.72 -9.51 -42.92 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -8.81 Total: 9.30 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.43 Total: 3.36 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.74 Total: -54.20 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.15 Total: -22.06 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.41 -9.51 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267715082.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.053 kcal (2) G-P(sol) polarization free energy of solvation -33.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds