Wall clock time and date at job start Tue Mar 31 2020 22:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08998 * 115.54375 * 2 1 4 4 C 1.52998 * 117.49754 * 145.66312 * 2 1 3 5 5 C 1.52996 * 117.49906 * 214.28855 * 2 1 3 6 6 H 1.08990 * 117.49939 * 145.01978 * 5 2 1 7 7 C 1.50702 * 117.49834 * 0.02562 * 5 2 1 8 8 O 1.21282 * 120.00262 * 359.97438 * 7 5 2 9 9 N 1.34777 * 120.00122 * 180.02562 * 7 5 2 10 10 C 1.46923 * 120.62709 * 359.71818 * 9 7 5 11 11 C 1.53627 * 108.54359 * 126.37049 * 10 9 7 12 12 C 1.53041 * 109.23911 * 54.85648 * 11 10 9 13 13 C 1.53001 * 109.44672 * 178.49967 * 12 11 10 14 14 N 1.46901 * 109.46741 * 185.49285 * 13 12 11 15 15 C 1.46899 * 111.00286 * 75.83543 * 14 13 12 16 16 C 1.46905 * 110.99693 * 199.78238 * 14 13 12 17 17 C 1.50702 * 109.47186 * 169.99855 * 16 14 13 18 18 O 1.21288 * 119.99937 * 0.02562 * 17 16 14 19 19 N 1.34774 * 119.99866 * 179.97438 * 17 16 14 20 20 C 1.37098 * 119.99818 * 180.02562 * 19 17 16 21 21 H 1.08002 * 120.00060 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99861 * 180.02562 * 20 19 17 23 23 N 1.31417 * 119.99795 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 120.00214 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.46942 * 90.00219 * 24 22 20 26 26 H 1.48496 * 109.47084 * 210.00270 * 24 22 20 27 27 H 1.48498 * 109.47047 * 329.99995 * 24 22 20 28 28 C 1.53042 * 109.53645 * 298.50762 * 12 11 10 29 29 C 1.46927 * 120.63251 * 180.02562 * 9 7 5 30 30 H 1.09003 * 109.46903 * 325.72645 * 1 2 3 31 31 H 1.08996 * 109.46663 * 205.72439 * 1 2 3 32 32 H 1.08995 * 109.47120 * 85.72492 * 1 2 3 33 33 H 1.08990 * 117.50038 * 214.98139 * 4 2 1 34 34 H 1.09007 * 117.49873 * 0.02562 * 4 2 1 35 35 H 1.09001 * 109.58587 * 246.20400 * 10 9 7 36 36 H 1.08998 * 109.59024 * 6.62653 * 10 9 7 37 37 H 1.08995 * 109.63164 * 294.86167 * 11 10 9 38 38 H 1.09005 * 109.43048 * 174.71863 * 11 10 9 39 39 H 1.09003 * 109.46270 * 58.53033 * 12 11 10 40 40 H 1.09000 * 109.46878 * 305.49094 * 13 12 11 41 41 H 1.09001 * 109.47526 * 65.49173 * 13 12 11 42 42 H 1.08994 * 109.47424 * 65.77626 * 15 14 13 43 43 H 1.08997 * 109.47163 * 185.78413 * 15 14 13 44 44 H 1.09009 * 109.46432 * 305.77748 * 15 14 13 45 45 H 1.09005 * 109.47091 * 290.00316 * 16 14 13 46 46 H 1.09000 * 109.47440 * 49.99775 * 16 14 13 47 47 H 0.97002 * 120.00219 * 0.02562 * 19 17 16 48 48 H 0.97004 * 119.99581 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.50072 * 301.41830 * 28 12 11 50 50 H 1.09007 * 109.49570 * 181.31555 * 28 12 11 51 51 H 1.09005 * 109.58293 * 353.36431 * 29 9 7 52 52 H 1.08987 * 109.58942 * 113.79318 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1206 0.7655 5 6 2.2366 -1.1213 -0.7645 6 1 3.1715 -0.8756 -1.2679 7 6 1.3721 -2.1408 -1.4605 8 8 0.1639 -2.0535 -1.4009 9 7 1.9416 -3.1503 -2.1482 10 6 3.4037 -3.2666 -2.2337 11 6 3.8095 -4.6752 -1.7742 12 6 3.0475 -5.7141 -2.6000 13 6 3.4759 -7.1192 -2.1719 14 7 2.8450 -8.1126 -3.0511 15 6 3.5103 -8.1552 -4.3601 16 6 2.8343 -9.4404 -2.4227 17 6 1.9715 -10.3729 -3.2332 18 8 1.4201 -9.9711 -4.2360 19 7 1.8134 -11.6536 -2.8444 20 6 1.0289 -12.5021 -3.5821 21 1 0.5378 -12.1443 -4.4750 22 6 0.8654 -13.8223 -3.1809 23 7 0.1138 -14.6358 -3.8883 24 14 1.7153 -14.4414 -1.6368 25 1 0.8254 -14.2360 -0.4659 26 1 2.0148 -15.8885 -1.7831 27 1 2.9811 -13.6919 -1.4342 28 6 1.5436 -5.5475 -2.3703 29 6 1.1121 -4.1517 -2.8324 30 1 -0.3633 0.8493 0.5787 31 1 -0.3632 -0.9258 0.4460 32 1 -0.3633 0.0766 -1.0248 33 1 3.1715 -0.8746 1.2687 34 1 1.6112 -1.8582 1.2688 35 1 3.7232 -3.1091 -3.2638 36 1 3.8680 -2.5219 -1.5871 37 1 3.5671 -4.8002 -0.7189 38 1 4.8814 -4.8096 -1.9202 39 1 3.2712 -5.5727 -3.6574 40 1 4.5600 -7.2063 -2.2442 41 1 3.1651 -7.2959 -1.1421 42 1 4.5297 -8.5212 -4.2379 43 1 2.9618 -8.8224 -5.0249 44 1 3.5330 -7.1532 -4.7888 45 1 3.8513 -9.8306 -2.3806 46 1 2.4337 -9.3609 -1.4121 47 1 2.2547 -11.9751 -2.0426 48 1 0.0000 -15.5576 -3.6084 49 1 1.3224 -5.6644 -1.3093 50 1 1.0026 -6.3027 -2.9406 51 1 0.0637 -3.9912 -2.5807 52 1 1.2489 -4.0647 -3.9101 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267715082.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:32 Heat of formation + Delta-G solvation = -59.117392 kcal Electronic energy + Delta-G solvation = -29627.950327 eV Core-core repulsion = 25627.454687 eV Total energy + Delta-G solvation = -4000.495641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47936 -40.51832 -39.36354 -37.77199 -37.08108 -35.91239 -34.10631 -33.73185 -32.09995 -29.90516 -29.46723 -28.52771 -26.81371 -25.77113 -24.84596 -23.62654 -22.64346 -21.85876 -21.23706 -20.92899 -20.16637 -19.53517 -18.41822 -17.77325 -16.83230 -16.74612 -16.58007 -16.46908 -16.07331 -15.93266 -15.66404 -15.38996 -14.98495 -14.91019 -14.78989 -14.40238 -14.28879 -14.15940 -14.00889 -13.81312 -13.62484 -13.54657 -13.24678 -13.07471 -13.02596 -12.67637 -12.60003 -12.41092 -12.36843 -12.36362 -12.15731 -11.98652 -11.74602 -11.48509 -11.46282 -11.27960 -11.16922 -10.89675 -10.50358 -10.33515 -10.22325 -9.61244 -9.11295 -8.40696 -6.01100 1.29228 1.35450 1.43851 1.51375 1.98265 2.00588 2.23028 2.66138 2.87031 3.15269 3.28751 3.50412 3.73032 3.79651 3.90434 3.94523 3.99940 4.13552 4.13672 4.22148 4.33826 4.36434 4.43672 4.47936 4.49266 4.53669 4.58679 4.64018 4.76701 4.80572 4.82958 4.86568 4.88549 4.93079 4.96971 4.99907 5.03659 5.08120 5.17988 5.19671 5.27099 5.29794 5.50957 5.52779 5.54838 5.65652 5.92916 6.06945 6.28971 6.46633 6.61329 6.90177 7.21794 7.41687 7.99923 8.77065 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021564 B = 0.001984 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.165769 B =14110.698442 C =14359.363283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.128 4.128 3 H 0.137 0.863 4 C -0.137 4.137 5 C -0.196 4.196 6 H 0.153 0.847 7 C 0.531 3.469 8 O -0.583 6.583 9 N -0.607 5.607 10 C 0.104 3.896 11 C -0.120 4.120 12 C -0.075 4.075 13 C 0.062 3.938 14 N -0.540 5.540 15 C 0.028 3.972 16 C 0.055 3.945 17 C 0.451 3.549 18 O -0.605 6.605 19 N -0.595 5.595 20 C -0.325 4.325 21 H 0.054 0.946 22 C -0.018 4.018 23 N -0.936 5.936 24 Si 0.965 3.035 25 H -0.258 1.258 26 H -0.275 1.275 27 H -0.231 1.231 28 C -0.111 4.111 29 C 0.114 3.886 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.044 0.956 33 H 0.135 0.865 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.115 0.885 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.052 0.948 50 H 0.063 0.937 51 H 0.063 0.937 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.357 28.410 12.854 35.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.146 4.146 3 H 0.154 0.846 4 C -0.174 4.174 5 C -0.217 4.217 6 H 0.171 0.829 7 C 0.321 3.679 8 O -0.464 6.464 9 N -0.339 5.339 10 C -0.017 4.017 11 C -0.159 4.159 12 C -0.094 4.094 13 C -0.065 4.065 14 N -0.264 5.264 15 C -0.120 4.120 16 C -0.076 4.076 17 C 0.239 3.761 18 O -0.488 6.488 19 N -0.237 5.237 20 C -0.454 4.454 21 H 0.072 0.928 22 C -0.216 4.216 23 N -0.577 5.577 24 Si 0.785 3.215 25 H -0.183 1.183 26 H -0.201 1.201 27 H -0.154 1.154 28 C -0.149 4.149 29 C -0.009 4.009 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.153 0.847 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.097 0.903 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.133 0.867 47 H 0.224 0.776 48 H 0.088 0.912 49 H 0.071 0.929 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.787 28.656 12.078 34.434 hybrid contribution 0.226 -1.595 0.098 1.614 sum 15.013 27.062 12.176 33.256 Atomic orbital electron populations 1.21268 0.93481 1.00760 1.01100 1.22498 0.95269 0.94950 1.01903 0.84551 1.23146 1.03816 1.00625 0.89796 1.22382 1.02474 1.00325 0.96495 0.82911 1.20391 0.87871 0.81682 0.77962 1.90689 1.16751 1.75821 1.63093 1.48232 1.08453 1.26077 1.51124 1.22128 0.77783 0.98592 1.03218 1.21981 1.01174 0.92881 0.99842 1.21085 0.94102 0.93700 1.00502 1.22264 0.97102 0.90845 0.96302 1.61437 1.55950 1.05028 1.03973 1.22415 0.95772 1.02502 0.91294 1.21849 0.98637 0.88996 0.98103 1.20973 0.85242 0.82589 0.87317 1.90514 1.52419 1.76456 1.29441 1.42058 1.45727 1.09867 1.26018 1.18984 1.25806 0.92285 1.08375 0.92765 1.26128 0.97715 0.95267 1.02503 1.69815 1.39756 1.06765 1.41359 0.85357 0.79899 0.78748 0.77458 1.18283 1.20057 1.15395 1.21719 0.97322 0.95014 1.00849 1.21510 0.95242 0.87785 0.96389 0.91783 0.94223 0.93724 0.84668 0.90020 0.90203 0.86954 0.91374 0.88127 0.91008 0.92563 0.90325 0.95037 0.93336 0.90256 0.90507 0.86665 0.77605 0.91229 0.92932 0.91852 0.91804 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 8.43 71.99 0.61 -1.42 16 2 C -0.13 -1.61 6.41 -10.79 -0.07 -1.68 16 3 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.14 -1.41 9.88 30.60 0.30 -1.11 16 5 C -0.20 -2.47 4.97 -11.54 -0.06 -2.53 16 6 H 0.15 0.95 6.81 -2.39 -0.02 0.94 16 7 C 0.53 11.28 7.46 87.66 0.65 11.93 16 8 O -0.58 -17.47 12.52 -3.04 -0.04 -17.51 16 9 N -0.61 -11.03 2.97 -817.99 -2.43 -13.46 16 10 C 0.10 1.03 6.33 86.51 0.55 1.58 16 11 C -0.12 -1.22 5.38 30.82 0.17 -1.05 16 12 C -0.07 -1.26 2.21 -10.77 -0.02 -1.28 16 13 C 0.06 1.16 4.39 86.30 0.38 1.53 16 14 N -0.54 -15.30 3.88 -927.02 -3.60 -18.90 16 15 C 0.03 0.81 9.03 127.69 1.15 1.97 16 16 C 0.06 1.67 5.43 85.56 0.46 2.14 16 17 C 0.45 20.37 7.52 87.66 0.66 21.03 16 18 O -0.60 -33.40 13.88 -3.05 -0.04 -33.44 16 19 N -0.59 -28.19 5.09 -306.99 -1.56 -29.76 16 20 C -0.33 -19.21 10.16 84.04 0.85 -18.36 16 21 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 22 C -0.02 -1.00 5.50 84.93 0.47 -0.54 16 23 N -0.94 -57.03 13.96 21.66 0.30 -56.73 16 24 Si 0.97 39.06 27.74 68.60 1.90 40.96 16 25 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 26 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 27 H -0.23 -7.79 6.52 99.48 0.65 -7.15 16 28 C -0.11 -2.50 5.27 30.69 0.16 -2.34 16 29 C 0.11 2.56 6.43 86.38 0.56 3.11 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.91 7.02 -2.39 -0.02 0.89 16 32 H 0.04 1.02 7.26 -2.39 -0.02 1.00 16 33 H 0.14 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.08 1.17 8.05 -2.38 -0.02 1.15 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.11 0.54 5.67 -2.39 -0.01 0.53 16 37 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.07 1.27 6.69 -2.39 -0.02 1.25 16 40 H 0.06 0.84 8.00 -2.39 -0.02 0.82 16 41 H 0.08 1.37 7.73 -2.39 -0.02 1.35 16 42 H 0.03 0.78 8.13 -2.39 -0.02 0.77 16 43 H 0.05 1.89 5.91 -2.39 -0.01 1.87 16 44 H 0.08 1.93 6.65 -2.38 -0.02 1.91 16 45 H 0.08 1.92 8.11 -2.38 -0.02 1.90 16 46 H 0.12 2.90 7.83 -2.39 -0.02 2.88 16 47 H 0.39 15.23 5.76 -92.71 -0.53 14.70 16 48 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 49 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.06 1.84 7.73 -2.38 -0.02 1.82 16 51 H 0.06 1.78 7.01 -2.38 -0.02 1.76 16 52 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -83.11 400.72 1.68 -81.43 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.32 Total: 34.40 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: 6.82 Total: 13.01 kcal Atomic # 7 Polarization: -111.56 SS G_CDS: -7.28 Total: -118.84 kcal Atomic # 8 Polarization: -50.87 SS G_CDS: -0.08 Total: -50.95 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 1.90 Total: 40.96 kcal Total: -83.11 1.68 -81.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267715082.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.316 kcal (2) G-P(sol) polarization free energy of solvation -83.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds