Wall clock time and date at job start Tue Mar 31 2020 20:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.05395 * 2 1 4 4 C 1.54263 * 110.03170 * 238.57794 * 2 1 3 5 5 C 1.54889 * 104.19848 * 264.32756 * 4 2 1 6 6 C 1.54896 * 102.74604 * 322.05543 * 5 4 2 7 7 C 1.53885 * 110.03160 * 121.41253 * 2 1 3 8 8 C 1.52994 * 110.03411 * 238.61895 * 7 2 1 9 9 C 1.50702 * 110.03225 * 0.02562 * 7 2 1 10 10 O 1.21273 * 119.99875 * 112.41794 * 9 7 2 11 11 N 1.34779 * 120.00018 * 292.42551 * 9 7 2 12 12 C 1.46496 * 120.00115 * 174.96561 * 11 9 7 13 13 C 1.50700 * 109.46993 * 179.97438 * 12 11 9 14 14 C 1.31007 * 119.99584 * 124.99923 * 13 12 11 15 15 C 1.50700 * 119.99584 * 179.97438 * 14 13 12 16 16 N 1.46901 * 109.46877 * 125.00099 * 15 14 13 17 17 C 1.46905 * 111.00042 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47141 * 180.02562 * 17 16 15 19 19 O 1.21290 * 119.99891 * 359.97438 * 18 17 16 20 20 N 1.34771 * 119.99735 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00069 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99628 * 359.97438 * 21 20 18 23 23 C 1.38941 * 120.00303 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99898 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00319 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47129 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47388 * 119.99712 * 25 23 21 28 28 H 1.48505 * 109.47266 * 239.99940 * 25 23 21 29 29 H 1.09001 * 109.47452 * 305.16995 * 1 2 3 30 30 H 1.08994 * 109.47384 * 65.17102 * 1 2 3 31 31 H 1.09002 * 109.47008 * 185.17283 * 1 2 3 32 32 H 1.09002 * 110.48705 * 23.01011 * 4 2 1 33 33 H 1.09003 * 110.48044 * 145.51573 * 4 2 1 34 34 H 1.08986 * 110.75749 * 80.37300 * 5 4 2 35 35 H 1.09000 * 110.75593 * 203.56384 * 5 4 2 36 36 H 1.08997 * 110.49119 * 279.26177 * 6 5 4 37 37 H 1.09007 * 110.48328 * 156.62168 * 6 5 4 38 38 H 1.08995 * 109.47240 * 180.69268 * 8 7 2 39 39 H 1.09003 * 109.47064 * 300.69341 * 8 7 2 40 40 H 1.09003 * 109.47404 * 60.69066 * 8 7 2 41 41 H 0.97003 * 119.99590 * 354.95873 * 11 9 7 42 42 H 1.09005 * 109.47105 * 59.99463 * 12 11 9 43 43 H 1.08994 * 109.47099 * 299.99725 * 12 11 9 44 44 H 1.07998 * 120.00310 * 304.99687 * 13 12 11 45 45 H 1.07998 * 120.00106 * 359.97438 * 14 13 12 46 46 H 1.08997 * 109.47384 * 4.99773 * 15 14 13 47 47 H 1.09005 * 109.46664 * 244.99848 * 15 14 13 48 48 H 1.00893 * 111.00057 * 303.95221 * 16 15 14 49 49 H 1.08998 * 109.46684 * 300.00361 * 17 16 15 50 50 H 1.09003 * 109.46563 * 59.99842 * 17 16 15 51 51 H 0.97001 * 120.00300 * 359.97438 * 20 18 17 52 52 H 0.97000 * 119.99944 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7556 -1.2368 5 6 2.3280 -2.1903 -0.7190 6 6 2.8875 -1.9406 0.7037 7 6 2.0571 -0.7535 1.2339 8 6 2.9398 0.1707 2.0749 9 6 0.9037 -1.2596 2.0613 10 8 0.6979 -2.4515 2.1498 11 7 0.1009 -0.3876 2.7030 12 6 -1.0838 -0.8711 3.4163 13 6 -1.8035 0.2953 4.0430 14 6 -3.0714 0.4987 3.7834 15 6 -3.7912 1.6647 4.4106 16 7 -4.4083 2.4827 3.3580 17 6 -5.1211 3.6311 3.9336 18 6 -5.7400 4.4445 2.8263 19 8 -5.6006 4.1017 1.6712 20 7 -6.4476 5.5535 3.1194 21 6 -7.0111 6.2933 2.1121 22 1 -6.8877 5.9876 1.0836 23 6 -7.7410 7.4363 2.4143 24 7 -7.8916 7.8080 3.6658 25 14 -8.5082 8.4447 1.0418 26 1 -8.1937 7.8188 -0.2676 27 1 -9.9808 8.4932 1.2268 28 1 -7.9594 9.8243 1.0749 29 1 -0.3634 0.5919 0.8400 30 1 -0.3634 0.4315 -0.9326 31 1 -0.3633 -1.0235 0.0927 32 1 1.3061 -0.7697 -2.0254 33 1 2.9798 -0.2987 -1.5979 34 1 1.4031 -2.7652 -0.6750 35 1 3.0651 -2.6943 -1.3440 36 1 3.9440 -1.6767 0.6573 37 1 2.7401 -2.8197 1.3312 38 1 3.3179 -0.3753 2.9391 39 1 3.7774 0.5211 1.4716 40 1 2.3532 1.0249 2.4130 41 1 0.3077 0.5600 2.6925 42 1 -0.7790 -1.5705 4.1948 43 1 -1.7493 -1.3750 2.7155 44 1 -1.2741 0.9634 4.7061 45 1 -3.6007 -0.1692 3.1200 46 1 -3.0805 2.2709 4.9723 47 1 -4.5647 1.2946 5.0836 48 1 -3.7203 2.7844 2.6845 49 1 -5.9038 3.2743 4.6031 50 1 -4.4199 4.2510 4.4922 51 1 -6.5587 5.8279 4.0431 52 1 -8.4014 8.6058 3.8768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268588530.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:57 Heat of formation + Delta-G solvation = -72.366993 kcal Electronic energy + Delta-G solvation = -28694.505083 eV Core-core repulsion = 24693.434896 eV Total energy + Delta-G solvation = -4001.070186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -41.12785 -38.37330 -37.91476 -36.71394 -35.30666 -33.94787 -33.07348 -31.89913 -31.28200 -31.14621 -28.45455 -26.70365 -26.10378 -24.59678 -24.21839 -22.87781 -21.94186 -20.71226 -20.26416 -19.34321 -19.01689 -17.91529 -16.99145 -16.61168 -16.24042 -15.76459 -15.64911 -15.55891 -14.93088 -14.67744 -14.45151 -14.21472 -13.90873 -13.72265 -13.57996 -13.56494 -13.39693 -13.10932 -12.92229 -12.88096 -12.63879 -12.54641 -12.21175 -11.90777 -11.71647 -11.61637 -11.49689 -11.30544 -11.17176 -11.11283 -11.06682 -10.97625 -10.87337 -10.80191 -10.35880 -10.24569 -9.99867 -9.54705 -9.53386 -9.10048 -8.50822 -8.11435 -7.98339 -6.43876 -3.84748 1.79264 2.43441 3.09665 3.14860 3.25624 3.32947 3.88249 4.06014 4.09269 4.14973 4.27126 4.30874 4.62262 4.72929 4.82789 4.84172 4.88778 4.99117 5.05582 5.05981 5.16554 5.22024 5.22804 5.24215 5.35611 5.38485 5.42144 5.44254 5.56305 5.59871 5.60882 5.64235 5.65892 5.71474 5.77329 5.79324 5.85825 5.90812 5.93769 6.04343 6.09190 6.14968 6.22731 6.41074 6.50756 7.14513 7.25754 7.53531 7.60731 7.99621 8.04355 8.58872 9.15835 9.51951 10.03205 10.73896 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.001748 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.795675 B =16011.125668 C =17119.099218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.083 4.083 3 H 0.081 0.919 4 C -0.121 4.121 5 C -0.123 4.123 6 C -0.107 4.107 7 C -0.084 4.084 8 C -0.140 4.140 9 C 0.533 3.467 10 O -0.541 6.541 11 N -0.726 5.726 12 C 0.153 3.847 13 C -0.191 4.191 14 C -0.109 4.109 15 C 0.082 3.918 16 N -0.666 5.666 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.402 0.598 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.114 0.886 45 H 0.119 0.881 46 H 0.032 0.968 47 H 0.082 0.918 48 H 0.350 0.650 49 H 0.087 0.913 50 H 0.044 0.956 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.106 -15.611 0.204 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.158 4.158 5 C -0.161 4.161 6 C -0.145 4.145 7 C -0.087 4.087 8 C -0.197 4.197 9 C 0.320 3.680 10 O -0.418 6.418 11 N -0.379 5.379 12 C 0.030 3.970 13 C -0.211 4.211 14 C -0.128 4.128 15 C -0.047 4.047 16 N -0.298 5.298 17 C -0.082 4.082 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.200 5.200 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.237 0.763 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.132 0.868 45 H 0.137 0.863 46 H 0.050 0.950 47 H 0.100 0.900 48 H 0.170 0.830 49 H 0.105 0.895 50 H 0.062 0.938 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 21.349 -16.918 -0.477 27.244 hybrid contribution 0.193 1.861 0.403 1.913 sum 21.542 -15.058 -0.073 26.283 Atomic orbital electron populations 1.22205 0.94296 1.02294 1.02823 1.21805 0.96295 0.99188 0.92909 0.90042 1.22455 1.00948 0.95525 0.96880 1.22470 1.01225 0.96690 0.95710 1.22362 0.98070 0.97195 0.96831 1.21558 0.94211 0.97463 0.95442 1.21916 0.99530 0.98518 0.99766 1.20334 0.82984 0.86187 0.78532 1.90676 1.72478 1.16023 1.62632 1.46183 1.26771 1.10895 1.54043 1.20287 0.86240 0.94864 0.95645 1.22820 0.96010 0.99711 1.02509 1.22994 0.94995 0.97211 0.97612 1.21078 0.97081 0.92784 0.93712 1.60027 1.32739 1.22178 1.14860 1.21691 0.98297 0.91597 0.96651 1.19792 0.84542 0.83351 0.89737 1.90526 1.64128 1.71070 1.20981 1.41871 1.46023 1.22168 1.09976 1.19757 1.28300 1.04672 0.90111 0.87848 1.25271 0.97711 0.97688 0.97344 1.69621 1.41476 1.25962 1.17241 0.85793 0.78553 0.79157 0.80803 1.19202 1.20723 1.20772 0.91546 0.92036 0.92452 0.91270 0.91436 0.91219 0.91495 0.91059 0.89954 0.92051 0.91191 0.92141 0.76278 0.90925 0.91079 0.86833 0.86266 0.94980 0.89951 0.83027 0.89491 0.93831 0.77451 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 7.80 37.16 0.29 -1.10 16 2 C -0.08 -0.61 3.16 -89.50 -0.28 -0.89 16 3 H 0.08 0.51 7.67 -51.93 -0.40 0.11 16 4 C -0.12 -0.84 6.37 -25.07 -0.16 -1.00 16 5 C -0.12 -0.96 6.91 -24.73 -0.17 -1.13 16 6 C -0.11 -0.85 5.67 -25.07 -0.14 -0.99 16 7 C -0.08 -0.64 0.81 -154.54 -0.13 -0.77 16 8 C -0.14 -0.80 7.99 37.15 0.30 -0.51 16 9 C 0.53 5.38 4.61 -10.98 -0.05 5.33 16 10 O -0.54 -7.45 15.44 5.56 0.09 -7.37 16 11 N -0.73 -6.10 3.74 -61.48 -0.23 -6.33 16 12 C 0.15 1.37 6.12 -5.20 -0.03 1.34 16 13 C -0.19 -1.61 9.24 -36.03 -0.33 -1.95 16 14 C -0.11 -1.09 9.38 -36.03 -0.34 -1.43 16 15 C 0.08 0.95 6.12 -4.98 -0.03 0.92 16 16 N -0.67 -10.43 6.11 -116.33 -0.71 -11.14 16 17 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 18 C 0.44 10.31 7.82 -10.99 -0.09 10.23 16 19 O -0.58 -15.77 15.78 5.55 0.09 -15.68 16 20 N -0.56 -14.19 5.29 -10.97 -0.06 -14.25 16 21 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 25 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.07 0.57 5.94 -51.93 -0.31 0.26 16 30 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 31 H 0.06 0.60 7.14 -51.93 -0.37 0.23 16 32 H 0.07 0.49 7.81 -51.93 -0.41 0.09 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.65 8.14 -51.94 -0.42 0.23 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.45 7.85 -51.93 -0.41 0.04 16 37 H 0.08 0.80 6.91 -51.93 -0.36 0.45 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.33 8.13 -51.93 -0.42 -0.09 16 40 H 0.06 0.29 7.23 -51.93 -0.38 -0.08 16 41 H 0.40 2.68 6.74 -40.82 -0.28 2.40 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.72 7.79 -51.93 -0.40 0.31 16 44 H 0.11 0.85 7.84 -52.49 -0.41 0.44 16 45 H 0.12 1.27 7.84 -52.49 -0.41 0.86 16 46 H 0.03 0.33 7.79 -51.93 -0.40 -0.07 16 47 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.35 5.67 8.42 -39.30 -0.33 5.34 16 49 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 50 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 52 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 415.34 15.07 6.26 6.26 Total: -1.00 -32.60 415.34 -9.22 -41.82 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -8.92 Total: 13.52 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.43 Total: 0.91 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.27 Total: -55.37 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.17 Total: -23.05 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.60 -9.22 -41.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268588530.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.542 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds