Wall clock time and date at job start Tue Mar 31 2020 20:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.05395 * 2 1 4 4 C 1.54263 * 110.03170 * 238.57794 * 2 1 3 5 5 C 1.54889 * 104.19848 * 264.32756 * 4 2 1 6 6 C 1.54896 * 102.74604 * 322.05543 * 5 4 2 7 7 C 1.53885 * 110.03160 * 121.41253 * 2 1 3 8 8 C 1.52994 * 110.03411 * 238.61895 * 7 2 1 9 9 C 1.50702 * 110.03225 * 0.02562 * 7 2 1 10 10 O 1.21273 * 119.99875 * 112.41794 * 9 7 2 11 11 N 1.34779 * 120.00018 * 292.42551 * 9 7 2 12 12 C 1.46496 * 120.00115 * 174.96561 * 11 9 7 13 13 C 1.50700 * 109.46993 * 179.97438 * 12 11 9 14 14 C 1.31007 * 119.99584 * 124.99923 * 13 12 11 15 15 C 1.50700 * 119.99584 * 179.97438 * 14 13 12 16 16 N 1.46901 * 109.46877 * 125.00099 * 15 14 13 17 17 C 1.46905 * 111.00042 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47141 * 180.02562 * 17 16 15 19 19 O 1.21290 * 119.99891 * 359.97438 * 18 17 16 20 20 N 1.34771 * 119.99735 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00069 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99628 * 359.97438 * 21 20 18 23 23 C 1.38941 * 120.00303 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99898 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00319 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47129 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47388 * 119.99712 * 25 23 21 28 28 H 1.48505 * 109.47266 * 239.99940 * 25 23 21 29 29 H 1.09001 * 109.47452 * 305.16995 * 1 2 3 30 30 H 1.08994 * 109.47384 * 65.17102 * 1 2 3 31 31 H 1.09002 * 109.47008 * 185.17283 * 1 2 3 32 32 H 1.09002 * 110.48705 * 23.01011 * 4 2 1 33 33 H 1.09003 * 110.48044 * 145.51573 * 4 2 1 34 34 H 1.08986 * 110.75749 * 80.37300 * 5 4 2 35 35 H 1.09000 * 110.75593 * 203.56384 * 5 4 2 36 36 H 1.08997 * 110.49119 * 279.26177 * 6 5 4 37 37 H 1.09007 * 110.48328 * 156.62168 * 6 5 4 38 38 H 1.08995 * 109.47240 * 180.69268 * 8 7 2 39 39 H 1.09003 * 109.47064 * 300.69341 * 8 7 2 40 40 H 1.09003 * 109.47404 * 60.69066 * 8 7 2 41 41 H 0.97003 * 119.99590 * 354.95873 * 11 9 7 42 42 H 1.09005 * 109.47105 * 59.99463 * 12 11 9 43 43 H 1.08994 * 109.47099 * 299.99725 * 12 11 9 44 44 H 1.07998 * 120.00310 * 304.99687 * 13 12 11 45 45 H 1.07998 * 120.00106 * 359.97438 * 14 13 12 46 46 H 1.08997 * 109.47384 * 4.99773 * 15 14 13 47 47 H 1.09005 * 109.46664 * 244.99848 * 15 14 13 48 48 H 1.00893 * 111.00057 * 303.95221 * 16 15 14 49 49 H 1.08998 * 109.46684 * 300.00361 * 17 16 15 50 50 H 1.09003 * 109.46563 * 59.99842 * 17 16 15 51 51 H 0.97001 * 120.00300 * 359.97438 * 20 18 17 52 52 H 0.97000 * 119.99944 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7556 -1.2368 5 6 2.3280 -2.1903 -0.7190 6 6 2.8875 -1.9406 0.7037 7 6 2.0571 -0.7535 1.2339 8 6 2.9398 0.1707 2.0749 9 6 0.9037 -1.2596 2.0613 10 8 0.6979 -2.4515 2.1498 11 7 0.1009 -0.3876 2.7030 12 6 -1.0838 -0.8711 3.4163 13 6 -1.8035 0.2953 4.0430 14 6 -3.0714 0.4987 3.7834 15 6 -3.7912 1.6647 4.4106 16 7 -4.4083 2.4827 3.3580 17 6 -5.1211 3.6311 3.9336 18 6 -5.7400 4.4445 2.8263 19 8 -5.6006 4.1017 1.6712 20 7 -6.4476 5.5535 3.1194 21 6 -7.0111 6.2933 2.1121 22 1 -6.8877 5.9876 1.0836 23 6 -7.7410 7.4363 2.4143 24 7 -7.8916 7.8080 3.6658 25 14 -8.5082 8.4447 1.0418 26 1 -8.1937 7.8188 -0.2676 27 1 -9.9808 8.4932 1.2268 28 1 -7.9594 9.8243 1.0749 29 1 -0.3634 0.5919 0.8400 30 1 -0.3634 0.4315 -0.9326 31 1 -0.3633 -1.0235 0.0927 32 1 1.3061 -0.7697 -2.0254 33 1 2.9798 -0.2987 -1.5979 34 1 1.4031 -2.7652 -0.6750 35 1 3.0651 -2.6943 -1.3440 36 1 3.9440 -1.6767 0.6573 37 1 2.7401 -2.8197 1.3312 38 1 3.3179 -0.3753 2.9391 39 1 3.7774 0.5211 1.4716 40 1 2.3532 1.0249 2.4130 41 1 0.3077 0.5600 2.6925 42 1 -0.7790 -1.5705 4.1948 43 1 -1.7493 -1.3750 2.7155 44 1 -1.2741 0.9634 4.7061 45 1 -3.6007 -0.1692 3.1200 46 1 -3.0805 2.2709 4.9723 47 1 -4.5647 1.2946 5.0836 48 1 -3.7203 2.7844 2.6845 49 1 -5.9038 3.2743 4.6031 50 1 -4.4199 4.2510 4.4922 51 1 -6.5587 5.8279 4.0431 52 1 -8.4014 8.6058 3.8768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268588530.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:55 Heat of formation + Delta-G solvation = -94.622468 kcal Electronic energy + Delta-G solvation = -28695.470152 eV Core-core repulsion = 24693.434896 eV Total energy + Delta-G solvation = -4002.035256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.84971 -40.16313 -38.65491 -37.72941 -36.38924 -35.83603 -34.03916 -33.24843 -32.48987 -31.89235 -29.57777 -27.62347 -27.18643 -25.90655 -25.07735 -23.92379 -22.71450 -21.38038 -21.22264 -20.85321 -19.95032 -19.77113 -17.99025 -17.63699 -17.27919 -16.98324 -16.56797 -16.43828 -16.31408 -15.98924 -15.67312 -15.41406 -15.14263 -14.99252 -14.58932 -14.27019 -14.23001 -13.98783 -13.89374 -13.62371 -13.56729 -13.43194 -13.30218 -13.19110 -13.07439 -12.90581 -12.69310 -12.40747 -12.36360 -12.12458 -12.08142 -11.85247 -11.69980 -11.59598 -11.51689 -11.46194 -11.41131 -10.79484 -10.40186 -10.29609 -10.01671 -9.89082 -9.33771 -8.47039 -5.95708 1.01378 1.36704 1.42314 1.56387 1.64774 2.04980 2.29505 2.37408 2.99757 3.20372 3.45655 3.53077 3.54187 3.67421 3.78209 4.07182 4.09628 4.27976 4.31664 4.32769 4.35880 4.37985 4.45464 4.47052 4.52749 4.56563 4.59272 4.63806 4.67978 4.79558 4.82523 4.85047 4.91658 4.94970 5.03913 5.07288 5.14296 5.18717 5.24900 5.28783 5.40203 5.41197 5.43956 5.45892 5.63296 5.70471 5.89130 6.10203 6.41519 6.54506 6.59948 7.12599 7.24251 7.56159 8.11468 8.70483 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016382 B = 0.001748 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.795675 B =16011.125668 C =17119.099218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.080 4.080 3 H 0.102 0.898 4 C -0.118 4.118 5 C -0.125 4.125 6 C -0.107 4.107 7 C -0.081 4.081 8 C -0.138 4.138 9 C 0.529 3.471 10 O -0.585 6.585 11 N -0.716 5.716 12 C 0.153 3.847 13 C -0.163 4.163 14 C -0.124 4.124 15 C 0.088 3.912 16 N -0.684 5.684 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.270 1.270 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.413 0.587 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.135 0.865 45 H 0.107 0.893 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.345 0.655 49 H 0.105 0.895 50 H 0.071 0.929 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.601 -14.216 0.905 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.099 4.099 3 H 0.121 0.879 4 C -0.156 4.156 5 C -0.163 4.163 6 C -0.145 4.145 7 C -0.084 4.084 8 C -0.195 4.195 9 C 0.317 3.683 10 O -0.465 6.465 11 N -0.369 5.369 12 C 0.030 3.970 13 C -0.182 4.182 14 C -0.144 4.144 15 C -0.040 4.040 16 N -0.316 5.316 17 C -0.067 4.067 18 C 0.224 3.776 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.251 0.749 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.152 0.848 45 H 0.125 0.875 46 H 0.071 0.929 47 H 0.106 0.894 48 H 0.164 0.836 49 H 0.123 0.877 50 H 0.088 0.912 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.847 -15.502 0.266 27.611 hybrid contribution -0.246 1.330 0.198 1.367 sum 22.601 -14.172 0.464 26.681 Atomic orbital electron populations 1.22179 0.95724 1.00633 1.02865 1.21839 0.94981 1.00271 0.92801 0.87950 1.22469 1.01707 0.94819 0.96580 1.22458 1.00364 0.97241 0.96203 1.22377 0.99376 0.96469 0.96270 1.21591 0.93503 0.97811 0.95502 1.21942 0.99771 0.98254 0.99549 1.20856 0.83460 0.85691 0.78295 1.90657 1.73697 1.17969 1.64201 1.46098 1.26122 1.11342 1.53309 1.20214 0.86297 0.95176 0.95334 1.22820 0.95202 0.98848 1.01367 1.22818 0.95547 0.97330 0.98688 1.21101 0.97619 0.92540 0.92772 1.60011 1.33488 1.21749 1.16363 1.21547 0.99198 0.91702 0.94278 1.20915 0.83134 0.82757 0.90781 1.90494 1.65257 1.71933 1.23404 1.41939 1.46625 1.22812 1.09663 1.19696 1.30446 1.06297 0.89844 0.90377 1.26039 0.97494 0.98066 0.99730 1.69675 1.41544 1.26400 1.18445 0.84871 0.78016 0.77806 0.77645 1.19842 1.19686 1.19499 0.91416 0.92038 0.94950 0.91731 0.89468 0.93873 0.90198 0.88864 0.92382 0.92346 0.89440 0.90939 0.74949 0.91115 0.92662 0.84755 0.87504 0.92932 0.89406 0.83617 0.87718 0.91163 0.76904 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 7.80 71.98 0.56 -2.14 16 2 C -0.08 -1.05 3.16 -10.07 -0.03 -1.08 16 3 H 0.10 0.96 7.67 -2.39 -0.02 0.95 16 4 C -0.12 -1.50 6.37 31.67 0.20 -1.30 16 5 C -0.13 -1.92 6.91 31.89 0.22 -1.70 16 6 C -0.11 -1.64 5.67 31.67 0.18 -1.46 16 7 C -0.08 -1.15 0.81 -52.20 -0.04 -1.20 16 8 C -0.14 -1.22 7.99 71.98 0.58 -0.65 16 9 C 0.53 10.70 4.61 87.66 0.40 11.10 16 10 O -0.59 -16.93 15.44 -3.01 -0.05 -16.98 16 11 N -0.72 -11.49 3.74 -466.80 -1.75 -13.24 16 12 C 0.15 2.69 6.12 85.63 0.52 3.22 16 13 C -0.16 -2.46 9.24 25.64 0.24 -2.22 16 14 C -0.12 -2.35 9.38 25.64 0.24 -2.11 16 15 C 0.09 1.82 6.12 85.56 0.52 2.34 16 16 N -0.68 -20.53 6.11 -521.96 -3.19 -23.73 16 17 C 0.07 2.13 6.17 85.56 0.53 2.66 16 18 C 0.44 20.49 7.82 87.66 0.69 21.18 16 19 O -0.62 -34.46 15.78 -3.06 -0.05 -34.51 16 20 N -0.57 -29.08 5.29 -307.00 -1.62 -30.70 16 21 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 24 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 25 Si 0.99 42.64 29.55 68.60 2.03 44.66 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 29 H 0.07 1.11 5.94 -2.39 -0.01 1.10 16 30 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 31 H 0.03 0.71 7.14 -2.39 -0.02 0.69 16 32 H 0.06 0.88 7.81 -2.39 -0.02 0.86 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 0.99 7.85 -2.39 -0.02 0.98 16 37 H 0.06 1.18 6.91 -2.38 -0.02 1.17 16 38 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.09 0.51 8.13 -2.39 -0.02 0.49 16 40 H 0.07 0.47 7.23 -2.39 -0.02 0.46 16 41 H 0.41 4.72 6.74 -92.71 -0.63 4.10 16 42 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 1.17 7.79 -2.39 -0.02 1.15 16 44 H 0.13 1.54 7.84 -2.91 -0.02 1.52 16 45 H 0.11 2.29 7.84 -2.91 -0.02 2.27 16 46 H 0.05 0.90 7.79 -2.39 -0.02 0.89 16 47 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 48 H 0.35 10.90 8.42 -89.70 -0.76 10.14 16 49 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 50 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 52 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -72.58 415.34 0.56 -72.02 By element: Atomic # 1 Polarization: 44.14 SS G_CDS: -1.18 Total: 42.96 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 6.09 Total: 8.37 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -6.28 Total: -116.52 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.09 Total: -51.49 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -72.58 0.56 -72.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268588530.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.606 kcal (2) G-P(sol) polarization free energy of solvation -72.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds