Wall clock time and date at job start Tue Mar 31 2020 20:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.52997 * 109.47441 * 239.99409 * 2 1 3 5 5 C 1.52998 * 109.47441 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46992 * 60.00327 * 5 4 2 7 7 C 1.53005 * 109.46953 * 300.00086 * 6 5 4 8 8 C 1.52998 * 109.47342 * 60.00128 * 7 6 5 9 9 H 1.08998 * 109.47126 * 59.99583 * 8 7 6 10 10 C 1.50700 * 109.47092 * 180.02562 * 8 7 6 11 11 O 1.21283 * 119.99803 * 119.99700 * 10 8 7 12 12 N 1.34777 * 119.99675 * 300.27576 * 10 8 7 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 14 14 C 1.52999 * 109.46992 * 179.97438 * 13 12 10 15 15 C 1.53941 * 113.73383 * 271.72823 * 14 13 12 16 16 N 1.47962 * 86.18113 * 221.92150 * 15 14 13 17 17 C 1.46895 * 111.00365 * 137.58139 * 16 15 14 18 18 C 1.50708 * 109.46864 * 70.64135 * 17 16 15 19 19 O 1.21292 * 120.00150 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99951 * 180.02562 * 18 17 16 21 21 C 1.37089 * 120.00039 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99948 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00141 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99775 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00045 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47442 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47344 * 120.00398 * 25 23 21 28 28 H 1.48504 * 109.47323 * 240.00354 * 25 23 21 29 29 C 1.47961 * 90.76325 * 24.68564 * 16 15 14 30 30 H 1.09005 * 109.46870 * 300.00495 * 1 2 3 31 31 H 1.09004 * 109.46783 * 60.00154 * 1 2 3 32 32 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46774 * 59.99875 * 4 2 1 34 34 H 1.09001 * 109.47109 * 300.01087 * 4 2 1 35 35 H 1.08998 * 109.47156 * 300.00035 * 5 4 2 36 36 H 1.09005 * 109.46870 * 180.02562 * 5 4 2 37 37 H 1.08994 * 109.47190 * 180.02562 * 6 5 4 38 38 H 1.09006 * 109.47262 * 59.99583 * 6 5 4 39 39 H 1.09006 * 109.46726 * 299.99825 * 7 6 5 40 40 H 1.09004 * 109.46966 * 180.02562 * 7 6 5 41 41 H 0.97000 * 119.99894 * 359.71837 * 12 10 8 42 42 H 1.08995 * 109.47421 * 299.99467 * 13 12 10 43 43 H 1.09001 * 109.47621 * 60.00103 * 13 12 10 44 44 H 1.08995 * 112.93975 * 43.43261 * 14 13 12 45 45 H 1.09001 * 113.75721 * 336.23431 * 15 14 13 46 46 H 1.08998 * 113.76060 * 107.60468 * 15 14 13 47 47 H 1.08999 * 109.47608 * 190.63768 * 17 16 15 48 48 H 1.08996 * 109.47317 * 310.64087 * 17 16 15 49 49 H 0.97000 * 119.99742 * 359.97438 * 20 18 17 50 50 H 0.96993 * 119.99729 * 179.97438 * 24 23 21 51 51 H 1.08999 * 113.76170 * 220.99157 * 29 16 15 52 52 H 1.09000 * 113.85354 * 89.64414 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5700 -0.7208 -1.2494 6 6 4.0805 -1.4416 -0.0002 7 6 3.5704 -0.7202 1.2490 8 6 2.0405 -0.7208 1.2494 9 1 1.6775 -1.7486 1.2496 10 6 1.5381 -0.0098 2.4794 11 8 0.8405 0.9760 2.3676 12 7 1.8688 -0.4661 3.7038 13 6 1.3854 0.2287 4.8995 14 6 1.9000 -0.4887 6.1491 15 6 0.9778 -1.6203 6.6378 16 7 1.2432 -1.1133 8.0022 17 6 0.0126 -1.0907 8.8041 18 6 -0.4019 -2.5030 9.1280 19 8 0.2622 -3.4365 8.7295 20 7 -1.5111 -2.7288 9.8595 21 6 -1.8885 -4.0135 10.1536 22 1 -1.2966 -4.8446 9.7995 23 6 -3.0318 -4.2463 10.9082 24 7 -3.7516 -3.2350 11.3395 25 14 -3.5455 -5.9968 11.3096 26 1 -2.5735 -6.9473 10.7123 27 1 -3.5736 -6.1789 12.7832 28 1 -4.8977 -6.2558 10.7530 29 6 1.5505 0.2305 7.4645 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6767 -0.2076 -2.1392 34 1 1.6766 -1.7490 -1.2491 35 1 3.9330 0.3070 -1.2498 36 1 3.9333 -1.2343 -2.1397 37 1 5.1705 -1.4408 -0.0002 38 1 3.7175 -2.4694 0.0001 39 1 3.9335 0.3076 1.2487 40 1 3.9345 -1.2335 2.1391 41 1 2.4267 -1.2545 3.7931 42 1 1.7488 1.2562 4.8945 43 1 0.2954 0.2288 4.9040 44 1 2.9482 -0.7771 6.0720 45 1 -0.0594 -1.5089 6.3219 46 1 1.3742 -2.6193 6.4557 47 1 0.1919 -0.5435 9.7296 48 1 -0.7800 -0.5998 8.2395 49 1 -2.0424 -1.9823 10.1778 50 1 -4.5499 -3.3975 11.8659 51 1 2.4042 0.7103 7.9430 52 1 0.6818 0.8846 7.3900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268867775.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:12 Heat of formation + Delta-G solvation = -65.171370 kcal Electronic energy + Delta-G solvation = -29168.441117 eV Core-core repulsion = 25167.682956 eV Total energy + Delta-G solvation = -4000.758161 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.73435 -39.97466 -38.07937 -37.64896 -35.00961 -33.90700 -32.74074 -31.88047 -31.28686 -30.49835 -27.60947 -26.55436 -25.98412 -24.89967 -23.75046 -22.52874 -21.61257 -20.85556 -20.10928 -19.46921 -19.18552 -17.90329 -17.32829 -16.44341 -16.20383 -15.60349 -15.45863 -15.19033 -14.90162 -14.77737 -14.63246 -14.49645 -14.33133 -14.15796 -13.67780 -13.57945 -13.22342 -12.93992 -12.79797 -12.51948 -12.49096 -12.17771 -12.07848 -11.80181 -11.72156 -11.54963 -11.49365 -11.32625 -11.21937 -11.09252 -10.92036 -10.78975 -10.63414 -10.59363 -10.43733 -10.35262 -10.22949 -9.62831 -9.52459 -9.19982 -8.66473 -8.23953 -7.97407 -6.42740 -3.83550 2.47698 2.97739 3.15355 3.25927 3.33055 3.87993 3.98371 4.19208 4.21953 4.27783 4.33377 4.42565 4.64433 4.74614 4.76828 4.85964 4.94454 5.02259 5.02708 5.11513 5.12805 5.16639 5.22231 5.35785 5.40954 5.43621 5.45371 5.55572 5.59289 5.60773 5.64900 5.71280 5.71373 5.72854 5.75372 5.80421 5.83268 5.88783 5.95924 6.03277 6.14703 6.16566 6.25338 6.29168 6.40628 6.61382 7.19284 7.32570 7.54300 8.04820 8.07657 8.60246 9.16938 9.53159 10.04698 10.75117 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.001896 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.443627 B =14764.671716 C =15312.967823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.068 4.068 3 H 0.075 0.925 4 C -0.116 4.116 5 C -0.122 4.122 6 C -0.118 4.118 7 C -0.111 4.111 8 C -0.103 4.103 9 H 0.097 0.903 10 C 0.516 3.484 11 O -0.537 6.537 12 N -0.727 5.727 13 C 0.128 3.872 14 C -0.134 4.134 15 C 0.026 3.974 16 N -0.453 5.453 17 C 0.010 3.990 18 C 0.444 3.556 19 O -0.580 6.580 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.008 3.992 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.402 0.598 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.054 0.946 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.090 0.910 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.334 8.884 -21.893 27.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.087 4.087 3 H 0.093 0.907 4 C -0.153 4.153 5 C -0.160 4.160 6 C -0.156 4.156 7 C -0.148 4.148 8 C -0.124 4.124 9 H 0.115 0.885 10 C 0.303 3.697 11 O -0.414 6.414 12 N -0.378 5.378 13 C 0.004 3.996 14 C -0.153 4.153 15 C -0.102 4.102 16 N -0.176 5.176 17 C -0.122 4.122 18 C 0.229 3.771 19 O -0.464 6.464 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.121 4.121 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.236 0.764 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.122 0.878 45 H 0.085 0.915 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.109 0.891 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.545 8.620 -21.656 26.958 hybrid contribution -1.194 -0.371 0.278 1.280 sum 12.351 8.249 -21.378 26.031 Atomic orbital electron populations 1.22079 0.94640 1.01587 1.03477 1.20884 0.96270 0.99374 0.92168 0.90682 1.21638 0.95302 1.00814 0.97567 1.21566 0.95825 1.00828 0.97734 1.21530 1.00416 0.99487 0.94138 1.21535 0.92890 1.01679 0.98738 1.21424 0.96928 1.00973 0.93114 0.88496 1.20670 0.79910 0.84571 0.84568 1.90638 1.37692 1.26485 1.86593 1.46061 1.53878 1.32231 1.05662 1.21424 0.99354 0.96018 0.82792 1.23341 1.01361 0.97559 0.93042 1.23866 0.98080 0.99348 0.88936 1.68402 1.28928 1.09791 1.10439 1.22463 0.92258 0.97708 0.99783 1.19690 0.83487 0.89624 0.84294 1.90513 1.54783 1.44397 1.56709 1.41882 1.22619 1.09029 1.46613 1.19742 1.08035 0.84539 1.30465 0.87892 1.25273 0.96232 0.99575 0.96960 1.69620 1.16981 1.30772 1.36918 0.85797 0.78452 0.81964 0.78113 1.19231 1.20731 1.20758 1.23960 1.01517 0.93162 0.93504 0.89815 0.93075 0.93450 0.91716 0.91859 0.91951 0.91953 0.91627 0.91638 0.91380 0.91359 0.76395 0.91257 0.91321 0.87771 0.91500 0.88834 0.89135 0.92806 0.77495 0.91916 0.89147 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 8.87 37.16 0.33 -1.19 16 2 C -0.07 -0.56 1.89 -90.62 -0.17 -0.74 16 3 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 4 C -0.12 -0.75 5.20 -26.73 -0.14 -0.89 16 5 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 6 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 7 C -0.11 -0.69 5.10 -26.73 -0.14 -0.82 16 8 C -0.10 -0.81 2.06 -91.77 -0.19 -1.00 16 9 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 10 C 0.52 5.42 6.86 -10.98 -0.08 5.35 16 11 O -0.54 -7.52 13.65 5.55 0.08 -7.44 16 12 N -0.73 -6.64 5.44 -60.30 -0.33 -6.97 16 13 C 0.13 1.30 5.53 -4.04 -0.02 1.28 16 14 C -0.13 -1.42 3.94 -89.68 -0.35 -1.77 16 15 C 0.03 0.39 6.31 -2.76 -0.02 0.37 16 16 N -0.45 -7.36 5.95 -239.71 -1.43 -8.78 16 17 C 0.01 0.18 5.31 -4.97 -0.03 0.15 16 18 C 0.44 10.55 7.59 -10.98 -0.08 10.47 16 19 O -0.58 -15.72 15.13 5.55 0.08 -15.64 16 20 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 21 C -0.30 -8.36 9.68 -14.94 -0.14 -8.51 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 25 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 C 0.01 0.10 7.54 -2.77 -0.02 0.08 16 30 H 0.08 1.01 5.51 -51.93 -0.29 0.72 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.36 7.56 -51.93 -0.39 -0.03 16 41 H 0.40 2.86 7.88 -40.82 -0.32 2.53 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.80 7.83 -51.93 -0.41 0.40 16 44 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.07 1.02 7.53 -51.93 -0.39 0.63 16 46 H 0.09 1.52 8.09 -51.93 -0.42 1.10 16 47 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 48 H 0.05 0.87 7.69 -51.93 -0.40 0.47 16 49 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 50 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 LS Contribution 407.91 15.07 6.15 6.15 Total: -1.00 -32.98 407.91 -10.46 -43.44 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -9.19 Total: 9.96 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -1.46 Total: 1.61 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -1.09 Total: -54.18 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: 0.16 Total: -23.08 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.98 -10.46 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268867775.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.730 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds