Wall clock time and date at job start Tue Mar 31 2020 21:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.52332 * 2 1 4 4 C 1.53037 * 109.49890 * 239.91549 * 2 1 3 5 5 C 1.53032 * 109.53660 * 178.68160 * 4 2 1 6 6 C 1.52763 * 109.38338 * 61.24570 * 5 4 2 7 7 N 1.46932 * 109.00649 * 305.58253 * 6 5 4 8 8 C 1.34775 * 120.63052 * 233.58523 * 7 6 5 9 9 O 1.21349 * 119.99491 * 171.62813 * 8 7 6 10 10 C 1.49446 * 120.00270 * 351.62643 * 8 7 6 11 11 O 1.21350 * 120.00146 * 353.49617 * 10 8 7 12 12 N 1.34777 * 120.00024 * 173.49440 * 10 8 7 13 13 C 1.46497 * 119.99790 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.45068 * 60.03423 * 13 12 10 15 15 C 1.53038 * 109.46042 * 180.02562 * 13 12 10 16 16 C 1.53195 * 109.31477 * 58.65532 * 15 13 12 17 17 N 1.46927 * 108.77523 * 54.63351 * 16 15 13 18 18 C 1.36942 * 120.62549 * 126.39536 * 17 16 15 19 19 H 1.07993 * 119.99315 * 215.27564 * 18 17 16 20 20 C 1.38810 * 119.99909 * 35.27623 * 18 17 16 21 21 N 1.31611 * 120.00235 * 13.35126 * 20 18 17 22 22 Si 1.86805 * 119.99418 * 193.35326 * 20 18 17 23 23 H 1.48501 * 109.47281 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47011 * 120.00248 * 22 20 18 25 25 H 1.48506 * 109.47052 * 240.00042 * 22 20 18 26 26 C 1.46918 * 118.73934 * 306.39441 * 17 16 15 27 27 C 1.53049 * 109.46323 * 300.06621 * 13 12 10 28 28 C 1.46921 * 118.73453 * 53.31254 * 7 6 5 29 29 H 1.09007 * 109.47121 * 299.92076 * 1 2 3 30 30 H 1.08996 * 109.47062 * 59.92289 * 1 2 3 31 31 H 1.09006 * 109.47206 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46313 * 298.70624 * 4 2 1 33 33 H 1.08998 * 109.45420 * 58.66515 * 4 2 1 34 34 H 1.09009 * 109.49803 * 181.31861 * 5 4 2 35 35 H 1.09000 * 109.50570 * 301.41566 * 5 4 2 36 36 H 1.09007 * 109.50905 * 185.70837 * 6 5 4 37 37 H 1.08997 * 109.43667 * 65.42264 * 6 5 4 38 38 H 0.97000 * 120.00147 * 359.97438 * 12 10 8 39 39 H 1.09005 * 109.47184 * 179.97438 * 14 13 12 40 40 H 1.08994 * 109.47436 * 299.96388 * 14 13 12 41 41 H 1.08993 * 109.47098 * 59.96815 * 14 13 12 42 42 H 1.09001 * 109.50025 * 298.70378 * 15 13 12 43 43 H 1.09002 * 109.52831 * 178.62225 * 15 13 12 44 44 H 1.08998 * 109.58693 * 174.42722 * 16 15 13 45 45 H 1.09002 * 109.58387 * 294.85084 * 16 15 13 46 46 H 0.97006 * 120.00014 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.58880 * 293.82113 * 26 17 16 48 48 H 1.09005 * 109.70413 * 173.46259 * 26 17 16 49 49 H 1.08998 * 109.49190 * 61.29691 * 27 13 12 50 50 H 1.09000 * 109.49996 * 181.39465 * 27 13 12 51 51 H 1.09002 * 109.58915 * 66.42787 * 28 7 6 52 52 H 1.09000 * 109.58695 * 186.71521 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5708 -0.6950 -1.2659 6 6 4.1055 -1.4216 -0.0331 7 7 3.5046 -0.8290 1.1697 8 6 4.2811 -0.3855 2.1780 9 8 3.7875 0.2372 3.0952 10 6 5.7500 -0.6604 2.1666 11 8 6.2257 -1.3815 1.3143 12 7 6.5465 -0.1075 3.1028 13 6 7.9863 -0.3775 3.0918 14 6 8.5845 0.1022 1.7679 15 6 8.6531 0.3650 4.2520 16 6 8.0275 -0.0931 5.5732 17 7 8.1230 -1.5568 5.6591 18 6 8.6945 -2.1557 6.7500 19 1 9.2709 -3.0609 6.6287 20 6 8.5330 -1.5994 8.0114 21 7 7.6297 -0.6623 8.2066 22 14 9.5979 -2.1807 9.4318 23 1 10.5285 -3.2347 8.9538 24 1 10.3782 -1.0359 9.9663 25 1 8.7330 -2.7342 10.5047 26 6 7.5937 -2.3654 4.5526 27 6 8.2242 -1.8818 3.2435 28 6 2.0413 -0.7238 1.2497 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6968 -1.7573 -1.2352 33 1 1.6582 -0.2245 -2.1388 34 1 3.9335 -1.1897 -2.1670 35 1 3.9160 0.3388 -1.2540 36 1 5.1896 -1.3159 0.0102 37 1 3.8413 -2.4774 -0.0913 38 1 6.1663 0.4692 3.7838 39 1 9.6560 -0.0981 1.7596 40 1 8.1097 -0.4269 0.9417 41 1 8.4142 1.1732 1.6592 42 1 8.5033 1.4380 4.1313 43 1 9.7207 0.1454 4.2595 44 1 8.5647 0.3578 6.4076 45 1 6.9802 0.2072 5.6051 46 1 7.5165 -0.2738 9.0882 47 1 6.5110 -2.2504 4.5013 48 1 7.8425 -3.4146 4.7123 49 1 7.7690 -2.4084 2.4047 50 1 9.2958 -2.0808 3.2603 51 1 1.6052 -1.7216 1.2981 52 1 1.7636 -0.1600 2.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270255812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:07 Heat of formation + Delta-G solvation = -45.225761 kcal Electronic energy + Delta-G solvation = -31473.452404 eV Core-core repulsion = 27473.559150 eV Total energy + Delta-G solvation = -3999.893254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.02784 -39.50316 -37.78684 -37.37719 -34.63221 -33.75083 -32.11081 -31.95722 -30.83385 -29.99357 -27.46461 -27.38276 -26.22105 -24.18581 -23.53578 -22.48989 -22.31256 -21.07446 -20.47599 -19.65349 -18.78744 -17.59179 -16.87163 -16.63201 -15.91469 -15.39506 -15.29466 -14.88263 -14.68741 -14.52130 -14.31898 -13.92739 -13.86446 -13.61353 -13.43542 -13.32270 -13.18388 -13.00682 -12.84463 -12.47585 -12.36506 -12.12876 -11.78102 -11.71105 -11.36179 -11.36055 -11.25068 -11.22295 -11.09470 -10.96341 -10.76038 -10.72574 -10.62427 -10.35241 -10.27258 -9.94633 -9.70686 -9.54205 -8.95077 -8.77210 -8.70297 -8.48082 -6.55027 -5.78923 -3.28991 1.58573 2.44442 3.34354 3.36456 3.44576 3.46817 3.62477 4.38210 4.49016 4.51895 4.56666 4.63396 4.83619 5.09104 5.18198 5.21410 5.26641 5.33164 5.34248 5.40447 5.45431 5.46712 5.49359 5.57230 5.58604 5.70487 5.78016 5.84073 5.87137 5.89693 5.97077 6.00618 6.12849 6.14436 6.23928 6.30269 6.31525 6.35435 6.50991 6.60336 6.64365 6.81529 6.89210 7.02662 7.09300 7.25474 7.52821 7.55479 7.82190 7.91545 8.23338 8.50212 9.22598 9.83423 10.45200 11.29221 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.002905 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.354989 B = 9635.110461 C =10361.983603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.074 0.926 4 C -0.116 4.116 5 C -0.135 4.135 6 C 0.068 3.932 7 N -0.586 5.586 8 C 0.506 3.494 9 O -0.518 6.518 10 C 0.512 3.488 11 O -0.519 6.519 12 N -0.671 5.671 13 C 0.180 3.820 14 C -0.161 4.161 15 C -0.146 4.146 16 C 0.174 3.826 17 N -0.589 5.589 18 C -0.257 4.257 19 H 0.062 0.938 20 C 0.009 3.991 21 N -0.899 5.899 22 Si 0.901 3.099 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.149 3.851 27 C -0.143 4.143 28 C 0.111 3.889 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.145 0.855 37 H 0.065 0.935 38 H 0.413 0.587 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.020 0.980 46 H 0.253 0.747 47 H 0.013 0.987 48 H 0.052 0.948 49 H 0.073 0.927 50 H 0.067 0.933 51 H 0.070 0.930 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.880 2.489 -19.946 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.174 4.174 6 C -0.053 4.053 7 N -0.319 5.319 8 C 0.289 3.711 9 O -0.394 6.394 10 C 0.293 3.707 11 O -0.398 6.398 12 N -0.323 5.323 13 C 0.096 3.904 14 C -0.219 4.219 15 C -0.186 4.186 16 C 0.048 3.952 17 N -0.312 5.312 18 C -0.387 4.387 19 H 0.080 0.920 20 C -0.191 4.191 21 N -0.542 5.542 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.217 1.217 26 C 0.022 3.978 27 C -0.183 4.183 28 C -0.011 4.011 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.162 0.838 37 H 0.084 0.916 38 H 0.250 0.750 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.038 0.962 46 H 0.064 0.936 47 H 0.031 0.969 48 H 0.071 0.929 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.818 2.394 -19.839 21.842 hybrid contribution 0.110 0.008 1.125 1.131 sum -8.708 2.403 -18.713 20.780 Atomic orbital electron populations 1.21767 0.94313 1.02093 1.02100 1.21494 0.95965 1.00168 0.94891 0.90744 1.21621 0.95687 1.00738 0.97337 1.21883 0.95685 1.01461 0.98330 1.22814 1.03793 0.96514 0.82222 1.47903 1.06427 1.59663 1.17947 1.20346 0.88160 0.79861 0.82716 1.90771 1.75040 1.38287 1.35266 1.19910 0.86993 0.81232 0.82591 1.90379 1.75249 1.37655 1.36555 1.46065 1.08430 1.47941 1.29827 1.20474 0.77628 0.96731 0.95608 1.22230 1.01080 1.00702 0.97861 1.22544 1.01042 0.98032 0.96991 1.20676 0.97162 0.84623 0.92761 1.43942 1.68601 1.00394 1.18219 1.19147 1.25058 1.09731 0.84775 0.92028 1.25250 0.97166 0.99269 0.97379 1.70011 1.32736 1.29530 1.21908 0.86252 0.79991 0.78152 0.82523 1.20188 1.21546 1.21668 1.20849 0.94832 0.94943 0.87135 1.22412 1.01693 0.93982 1.00178 1.21780 0.78977 1.01067 0.99274 0.92291 0.92318 0.92433 0.91732 0.91820 0.90575 0.91785 0.83841 0.91630 0.74967 0.91781 0.90867 0.93128 0.92546 0.90647 0.90168 0.96190 0.93649 0.96891 0.92936 0.90837 0.91441 0.91163 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.11 -0.90 2.87 -90.50 -0.26 -1.16 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -0.88 5.17 -26.70 -0.14 -1.01 16 5 C -0.14 -1.14 6.06 -26.84 -0.16 -1.30 16 6 C 0.07 0.73 5.96 -3.93 -0.02 0.71 16 7 N -0.59 -7.43 2.98 -173.53 -0.52 -7.95 16 8 C 0.51 7.93 7.74 -11.59 -0.09 7.84 16 9 O -0.52 -9.42 15.92 5.50 0.09 -9.33 16 10 C 0.51 8.14 7.17 -11.59 -0.08 8.05 16 11 O -0.52 -8.16 9.39 5.50 0.05 -8.10 16 12 N -0.67 -11.09 4.09 -48.00 -0.20 -11.28 16 13 C 0.18 2.96 0.66 -131.78 -0.09 2.88 16 14 C -0.16 -2.24 8.40 37.16 0.31 -1.93 16 15 C -0.15 -2.61 4.96 -26.61 -0.13 -2.74 16 16 C 0.17 3.97 4.97 -3.71 -0.02 3.96 16 17 N -0.59 -14.61 2.95 -172.35 -0.51 -15.12 16 18 C -0.26 -7.05 9.52 -15.06 -0.14 -7.19 16 19 H 0.06 1.68 7.86 -52.49 -0.41 1.27 16 20 C 0.01 0.25 4.96 -17.43 -0.09 0.16 16 21 N -0.90 -26.02 11.53 55.49 0.64 -25.39 16 22 Si 0.90 21.65 29.57 -169.99 -5.03 16.62 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.15 3.24 6.25 -3.74 -0.02 3.21 16 27 C -0.14 -2.58 4.66 -26.63 -0.12 -2.70 16 28 C 0.11 1.20 5.73 -3.71 -0.02 1.18 16 29 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.54 8.14 -51.92 -0.42 0.11 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.14 1.78 4.29 -54.91 -0.24 1.54 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.41 7.13 6.76 -40.82 -0.28 6.86 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.05 6.17 -51.93 -0.32 0.73 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.08 2.06 6.51 -51.93 -0.34 1.72 16 45 H 0.02 0.48 6.94 -51.93 -0.36 0.12 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.01 0.30 7.74 -51.93 -0.40 -0.10 16 48 H 0.05 1.15 7.94 -51.93 -0.41 0.74 16 49 H 0.07 1.30 6.20 -51.93 -0.32 0.98 16 50 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 51 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 52 H 0.09 1.14 7.00 -51.93 -0.36 0.78 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -30.23 389.88 -9.25 -39.48 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.92 Total: 5.88 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -0.74 Total: 9.31 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -0.58 Total: -59.73 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.14 Total: -17.44 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.23 -9.25 -39.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270255812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.741 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds