Wall clock time and date at job start Tue Mar 31 2020 21:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.52332 * 2 1 4 4 C 1.53037 * 109.49890 * 239.91549 * 2 1 3 5 5 C 1.53032 * 109.53660 * 178.68160 * 4 2 1 6 6 C 1.52763 * 109.38338 * 61.24570 * 5 4 2 7 7 N 1.46932 * 109.00649 * 305.58253 * 6 5 4 8 8 C 1.34775 * 120.63052 * 233.58523 * 7 6 5 9 9 O 1.21349 * 119.99491 * 171.62813 * 8 7 6 10 10 C 1.49446 * 120.00270 * 351.62643 * 8 7 6 11 11 O 1.21350 * 120.00146 * 353.49617 * 10 8 7 12 12 N 1.34777 * 120.00024 * 173.49440 * 10 8 7 13 13 C 1.46497 * 119.99790 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.45068 * 60.03423 * 13 12 10 15 15 C 1.53038 * 109.46042 * 180.02562 * 13 12 10 16 16 C 1.53195 * 109.31477 * 58.65532 * 15 13 12 17 17 N 1.46927 * 108.77523 * 54.63351 * 16 15 13 18 18 C 1.36942 * 120.62549 * 126.39536 * 17 16 15 19 19 H 1.07993 * 119.99315 * 215.27564 * 18 17 16 20 20 C 1.38810 * 119.99909 * 35.27623 * 18 17 16 21 21 N 1.31611 * 120.00235 * 13.35126 * 20 18 17 22 22 Si 1.86805 * 119.99418 * 193.35326 * 20 18 17 23 23 H 1.48501 * 109.47281 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47011 * 120.00248 * 22 20 18 25 25 H 1.48506 * 109.47052 * 240.00042 * 22 20 18 26 26 C 1.46918 * 118.73934 * 306.39441 * 17 16 15 27 27 C 1.53049 * 109.46323 * 300.06621 * 13 12 10 28 28 C 1.46921 * 118.73453 * 53.31254 * 7 6 5 29 29 H 1.09007 * 109.47121 * 299.92076 * 1 2 3 30 30 H 1.08996 * 109.47062 * 59.92289 * 1 2 3 31 31 H 1.09006 * 109.47206 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46313 * 298.70624 * 4 2 1 33 33 H 1.08998 * 109.45420 * 58.66515 * 4 2 1 34 34 H 1.09009 * 109.49803 * 181.31861 * 5 4 2 35 35 H 1.09000 * 109.50570 * 301.41566 * 5 4 2 36 36 H 1.09007 * 109.50905 * 185.70837 * 6 5 4 37 37 H 1.08997 * 109.43667 * 65.42264 * 6 5 4 38 38 H 0.97000 * 120.00147 * 359.97438 * 12 10 8 39 39 H 1.09005 * 109.47184 * 179.97438 * 14 13 12 40 40 H 1.08994 * 109.47436 * 299.96388 * 14 13 12 41 41 H 1.08993 * 109.47098 * 59.96815 * 14 13 12 42 42 H 1.09001 * 109.50025 * 298.70378 * 15 13 12 43 43 H 1.09002 * 109.52831 * 178.62225 * 15 13 12 44 44 H 1.08998 * 109.58693 * 174.42722 * 16 15 13 45 45 H 1.09002 * 109.58387 * 294.85084 * 16 15 13 46 46 H 0.97006 * 120.00014 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.58880 * 293.82113 * 26 17 16 48 48 H 1.09005 * 109.70413 * 173.46259 * 26 17 16 49 49 H 1.08998 * 109.49190 * 61.29691 * 27 13 12 50 50 H 1.09000 * 109.49996 * 181.39465 * 27 13 12 51 51 H 1.09002 * 109.58915 * 66.42787 * 28 7 6 52 52 H 1.09000 * 109.58695 * 186.71521 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5708 -0.6950 -1.2659 6 6 4.1055 -1.4216 -0.0331 7 7 3.5046 -0.8290 1.1697 8 6 4.2811 -0.3855 2.1780 9 8 3.7875 0.2372 3.0952 10 6 5.7500 -0.6604 2.1666 11 8 6.2257 -1.3815 1.3143 12 7 6.5465 -0.1075 3.1028 13 6 7.9863 -0.3775 3.0918 14 6 8.5845 0.1022 1.7679 15 6 8.6531 0.3650 4.2520 16 6 8.0275 -0.0931 5.5732 17 7 8.1230 -1.5568 5.6591 18 6 8.6945 -2.1557 6.7500 19 1 9.2709 -3.0609 6.6287 20 6 8.5330 -1.5994 8.0114 21 7 7.6297 -0.6623 8.2066 22 14 9.5979 -2.1807 9.4318 23 1 10.5285 -3.2347 8.9538 24 1 10.3782 -1.0359 9.9663 25 1 8.7330 -2.7342 10.5047 26 6 7.5937 -2.3654 4.5526 27 6 8.2242 -1.8818 3.2435 28 6 2.0413 -0.7238 1.2497 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5150 -0.8893 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6968 -1.7573 -1.2352 33 1 1.6582 -0.2245 -2.1388 34 1 3.9335 -1.1897 -2.1670 35 1 3.9160 0.3388 -1.2540 36 1 5.1896 -1.3159 0.0102 37 1 3.8413 -2.4774 -0.0913 38 1 6.1663 0.4692 3.7838 39 1 9.6560 -0.0981 1.7596 40 1 8.1097 -0.4269 0.9417 41 1 8.4142 1.1732 1.6592 42 1 8.5033 1.4380 4.1313 43 1 9.7207 0.1454 4.2595 44 1 8.5647 0.3578 6.4076 45 1 6.9802 0.2072 5.6051 46 1 7.5165 -0.2738 9.0882 47 1 6.5110 -2.2504 4.5013 48 1 7.8425 -3.4146 4.7123 49 1 7.7690 -2.4084 2.4047 50 1 9.2958 -2.0808 3.2603 51 1 1.6052 -1.7216 1.2981 52 1 1.7636 -0.1600 2.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270255812.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:04 Heat of formation + Delta-G solvation = -63.233792 kcal Electronic energy + Delta-G solvation = -31474.233291 eV Core-core repulsion = 27473.559150 eV Total energy + Delta-G solvation = -4000.674141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.24024 -40.71179 -38.88425 -38.75179 -36.25867 -34.74378 -33.69817 -32.84812 -32.42536 -31.67512 -29.09329 -28.24651 -27.09974 -25.95156 -24.72494 -23.97189 -23.24216 -22.62615 -21.58937 -20.63255 -20.27623 -18.90553 -18.51725 -17.91440 -17.06577 -16.87701 -16.49585 -16.27980 -16.00838 -15.61052 -15.47791 -15.28277 -15.14522 -14.96726 -14.86878 -14.60526 -14.41277 -14.09023 -14.07024 -13.67274 -13.32181 -13.15815 -13.11615 -12.96141 -12.85137 -12.68687 -12.65603 -12.55741 -12.40569 -12.15842 -12.01359 -11.99982 -11.83084 -11.81199 -11.65474 -11.33952 -11.32512 -11.19748 -10.58244 -10.22841 -9.95151 -9.78825 -8.58115 -7.88507 -5.42621 0.34092 1.30676 1.44883 1.46678 1.57448 2.10827 2.47132 2.50184 3.25472 3.27441 3.68924 3.74193 3.82581 3.83510 3.93086 3.99418 4.08863 4.10887 4.31725 4.40631 4.46494 4.57456 4.62718 4.63855 4.70933 4.72779 4.78045 4.86030 4.88562 4.88995 4.91344 4.95969 4.99365 5.06491 5.13146 5.17368 5.17986 5.27046 5.29432 5.29775 5.34410 5.39136 5.43495 5.48399 5.60964 5.64770 5.71104 5.99267 6.28647 6.41763 6.69072 6.95981 7.15631 7.82800 8.39506 9.16814 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.002905 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.354989 B = 9635.110461 C =10361.983603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.062 0.938 4 C -0.112 4.112 5 C -0.130 4.130 6 C 0.064 3.936 7 N -0.577 5.577 8 C 0.499 3.501 9 O -0.555 6.555 10 C 0.512 3.488 11 O -0.516 6.516 12 N -0.677 5.677 13 C 0.182 3.818 14 C -0.150 4.150 15 C -0.132 4.132 16 C 0.182 3.818 17 N -0.605 5.605 18 C -0.268 4.268 19 H 0.060 0.940 20 C -0.042 4.042 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.266 1.266 24 H -0.287 1.287 25 H -0.294 1.294 26 C 0.150 3.850 27 C -0.129 4.129 28 C 0.105 3.895 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.131 0.869 37 H 0.075 0.925 38 H 0.407 0.593 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.047 0.953 45 H -0.001 1.001 46 H 0.250 0.750 47 H -0.005 1.005 48 H 0.045 0.955 49 H 0.080 0.920 50 H 0.073 0.927 51 H 0.084 0.916 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 2.127 -22.546 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.080 0.920 4 C -0.150 4.150 5 C -0.168 4.168 6 C -0.056 4.056 7 N -0.309 5.309 8 C 0.282 3.718 9 O -0.434 6.434 10 C 0.294 3.706 11 O -0.395 6.395 12 N -0.328 5.328 13 C 0.097 3.903 14 C -0.208 4.208 15 C -0.171 4.171 16 C 0.056 3.944 17 N -0.328 5.328 18 C -0.399 4.399 19 H 0.078 0.922 20 C -0.239 4.239 21 N -0.575 5.575 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.213 1.213 25 H -0.221 1.221 26 C 0.024 3.976 27 C -0.169 4.169 28 C -0.016 4.016 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.148 0.852 37 H 0.093 0.907 38 H 0.244 0.756 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.017 0.983 46 H 0.059 0.941 47 H 0.013 0.987 48 H 0.064 0.936 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.102 0.898 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.552 2.004 -22.513 24.166 hybrid contribution -0.052 0.049 1.893 1.895 sum -8.604 2.053 -20.620 22.437 Atomic orbital electron populations 1.21744 0.92814 1.02808 1.02515 1.21456 0.97125 0.99206 0.94168 0.91983 1.21619 0.94836 1.01312 0.97217 1.21856 0.96408 1.00855 0.97662 1.22900 1.03040 0.97319 0.82355 1.48095 1.07188 1.58071 1.17571 1.20382 0.88268 0.80083 0.83075 1.90752 1.75497 1.40319 1.36807 1.19966 0.87141 0.81103 0.82401 1.90393 1.75391 1.37401 1.36361 1.46103 1.08587 1.48191 1.29941 1.20476 0.77767 0.95393 0.96618 1.22126 1.01662 1.01421 0.95546 1.22346 1.00819 0.99557 0.94411 1.20489 0.95858 0.83612 0.94458 1.44191 1.68810 1.01398 1.18440 1.19439 1.24839 1.09752 0.85839 0.92190 1.25993 0.98442 0.99698 0.99755 1.70165 1.34374 1.30842 1.22153 0.85224 0.78321 0.77804 0.79160 1.19040 1.21330 1.22061 1.20880 0.93970 0.94471 0.88270 1.22251 1.01604 0.95255 0.97772 1.21982 0.77811 1.01924 0.99926 0.92834 0.90994 0.91556 0.90811 0.90087 0.88497 0.92504 0.85206 0.90681 0.75635 0.90266 0.91003 0.91789 0.90125 0.90127 0.93450 0.98338 0.94061 0.98717 0.93621 0.90119 0.90800 0.89780 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.20 71.98 0.66 -0.99 16 2 C -0.10 -1.55 2.87 -10.71 -0.03 -1.58 16 3 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 4 C -0.11 -1.37 5.17 30.62 0.16 -1.21 16 5 C -0.13 -1.86 6.06 30.53 0.19 -1.68 16 6 C 0.06 1.29 5.96 86.22 0.51 1.80 16 7 N -0.58 -14.40 2.98 -821.29 -2.45 -16.84 16 8 C 0.50 15.91 7.74 87.27 0.68 16.59 16 9 O -0.56 -21.07 15.92 -3.24 -0.05 -21.12 16 10 C 0.51 16.23 7.17 87.27 0.63 16.86 16 11 O -0.52 -15.69 9.39 -3.25 -0.03 -15.72 16 12 N -0.68 -22.38 4.09 -424.12 -1.73 -24.12 16 13 C 0.18 5.77 0.66 3.63 0.00 5.77 16 14 C -0.15 -3.76 8.40 71.98 0.60 -3.15 16 15 C -0.13 -4.59 4.96 30.67 0.15 -4.43 16 16 C 0.18 8.52 4.97 86.36 0.43 8.95 16 17 N -0.60 -30.67 2.95 -699.19 -2.07 -32.74 16 18 C -0.27 -14.95 9.52 84.03 0.80 -14.15 16 19 H 0.06 3.30 7.86 -2.91 -0.02 3.28 16 20 C -0.04 -2.39 4.96 84.86 0.42 -1.97 16 21 N -0.93 -55.59 11.53 21.65 0.25 -55.34 16 22 Si 0.97 45.18 29.57 68.60 2.03 47.20 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 C 0.15 6.62 6.25 86.35 0.54 7.16 16 27 C -0.13 -4.53 4.66 30.66 0.14 -4.39 16 28 C 0.11 2.21 5.73 86.37 0.49 2.70 16 29 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.13 3.03 4.29 -49.72 -0.21 2.82 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.41 14.51 6.76 -92.71 -0.63 13.88 16 39 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 40 H 0.07 1.86 6.17 -2.39 -0.01 1.84 16 41 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.05 2.51 6.51 -2.39 -0.02 2.50 16 45 H 0.00 -0.07 6.94 -2.39 -0.02 -0.09 16 46 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 47 H -0.01 -0.24 7.74 -2.39 -0.02 -0.26 16 48 H 0.05 2.03 7.94 -2.38 -0.02 2.01 16 49 H 0.08 2.73 6.20 -2.39 -0.01 2.72 16 50 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 51 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 52 H 0.07 1.87 7.00 -2.39 -0.02 1.85 16 Total: -1.00 -67.06 389.88 2.41 -64.66 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.08 Total: 27.73 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 6.38 Total: 26.28 kcal Atomic # 7 Polarization: -123.03 SS G_CDS: -6.00 Total: -129.03 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -0.08 Total: -36.83 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -67.06 2.41 -64.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270255812.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.423 kcal (2) G-P(sol) polarization free energy of solvation -67.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds