Wall clock time and date at job start Tue Mar 31 2020 21:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.52400 * 2 1 4 4 C 1.53038 * 109.49650 * 239.92314 * 2 1 3 5 5 C 1.53036 * 109.53883 * 178.68212 * 4 2 1 6 6 C 1.53193 * 109.31424 * 61.36346 * 5 4 2 7 7 N 1.46930 * 108.77510 * 305.36785 * 6 5 4 8 8 C 1.34777 * 120.62882 * 233.58679 * 7 6 5 9 9 O 1.21354 * 119.99893 * 171.30054 * 8 7 6 10 10 C 1.49450 * 119.99926 * 351.29498 * 8 7 6 11 11 O 1.21343 * 120.00278 * 353.11840 * 10 8 7 12 12 N 1.34779 * 119.99556 * 173.12228 * 10 8 7 13 13 C 1.48116 * 127.03750 * 359.68196 * 12 10 8 14 14 C 1.54597 * 103.42358 * 219.29163 * 13 12 10 15 15 C 1.54624 * 102.91137 * 322.86593 * 14 13 12 16 16 C 1.53000 * 110.32817 * 262.81044 * 15 14 13 17 17 C 1.52997 * 110.41527 * 140.63968 * 15 14 13 18 18 N 1.46496 * 109.46950 * 182.87485 * 17 15 14 19 19 C 1.36939 * 119.99847 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99808 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00020 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00016 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99732 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47087 * 60.00431 * 23 21 19 25 25 H 1.48502 * 109.46734 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47306 * 300.00107 * 23 21 19 27 27 C 1.47490 * 127.02926 * 180.02562 * 12 10 8 28 28 C 1.46928 * 118.73777 * 53.60463 * 7 6 5 29 29 H 1.09000 * 109.47271 * 299.91902 * 1 2 3 30 30 H 1.08999 * 109.46865 * 59.91568 * 1 2 3 31 31 H 1.08997 * 109.47271 * 179.91568 * 1 2 3 32 32 H 1.08998 * 109.46117 * 298.70182 * 4 2 1 33 33 H 1.08994 * 109.46552 * 58.66416 * 4 2 1 34 34 H 1.09001 * 109.50329 * 301.41429 * 5 4 2 35 35 H 1.09004 * 109.50204 * 181.31185 * 5 4 2 36 36 H 1.08998 * 109.59017 * 185.57690 * 6 5 4 37 37 H 1.09004 * 109.58905 * 65.14953 * 6 5 4 38 38 H 1.09001 * 110.66149 * 337.76829 * 13 12 10 39 39 H 1.08996 * 110.66317 * 100.88961 * 13 12 10 40 40 H 1.09001 * 110.83490 * 204.45105 * 14 13 12 41 41 H 1.08998 * 110.57895 * 81.16646 * 14 13 12 42 42 H 1.08999 * 109.47718 * 177.06966 * 16 15 14 43 43 H 1.09000 * 109.47104 * 297.07951 * 16 15 14 44 44 H 1.09003 * 109.47009 * 57.06846 * 16 15 14 45 45 H 1.09005 * 109.46647 * 302.87388 * 17 15 14 46 46 H 1.08992 * 109.47368 * 62.87150 * 17 15 14 47 47 H 0.97000 * 120.00485 * 359.97438 * 18 17 15 48 48 H 0.96996 * 119.99622 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.91369 * 273.87213 * 27 12 10 50 50 H 1.09000 * 109.91660 * 34.96380 * 27 12 10 51 51 H 1.09002 * 109.58062 * 186.60538 * 28 7 6 52 52 H 1.08998 * 109.58487 * 66.18129 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7230 -1.2484 5 6 3.5708 -0.6949 -1.2661 6 6 4.1053 -1.4266 -0.0309 7 7 3.5046 -0.8291 1.1695 8 6 4.2812 -0.3864 2.1782 9 8 3.7894 0.2453 3.0902 10 6 5.7478 -0.6736 2.1735 11 8 6.2195 -1.4086 1.3312 12 7 6.5465 -0.1161 3.1051 13 6 6.1410 0.8027 4.1938 14 6 7.2959 1.8290 4.2462 15 6 8.5433 0.9602 3.9631 16 6 9.2261 0.5673 5.2747 17 6 9.5229 1.7112 3.0592 18 7 10.6630 0.8453 2.7488 19 6 11.6747 1.3057 1.9490 20 1 11.6323 2.3074 1.5474 21 6 12.7553 0.4854 1.6553 22 7 12.8073 -0.7352 2.1451 23 14 14.1357 1.1138 0.5648 24 1 14.7536 2.3112 1.1891 25 1 15.1624 0.0528 0.4051 26 1 13.5883 1.4767 -0.7670 27 6 8.0044 -0.2907 3.2447 28 6 2.0413 -0.7238 1.2495 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0276 -0.0015 32 1 1.6967 -1.7572 -1.2354 33 1 1.6582 -0.2244 -2.1389 34 1 3.9159 0.3389 -1.2541 35 1 3.9334 -1.1896 -2.1672 36 1 5.1896 -1.3246 0.0136 37 1 3.8375 -2.4818 -0.0869 38 1 5.2000 1.2960 3.9502 39 1 6.0620 0.2670 5.1397 40 1 7.3616 2.2888 5.2323 41 1 7.1701 2.5871 3.4732 42 1 10.0719 -0.0867 5.0625 43 1 9.5790 1.4644 5.7835 44 1 8.5137 0.0444 5.9128 45 1 9.0198 1.9949 2.1348 46 1 9.8755 2.6069 3.5706 47 1 10.7013 -0.0543 3.1098 48 1 13.5622 -1.3085 1.9395 49 1 8.2167 -1.1798 3.8383 50 1 8.4632 -0.3834 2.2603 51 1 1.7638 -0.1580 2.1389 52 1 1.6053 -1.7216 1.2979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270807138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:06 Heat of formation + Delta-G solvation = -45.663998 kcal Electronic energy + Delta-G solvation = -30640.513274 eV Core-core repulsion = 26640.601017 eV Total energy + Delta-G solvation = -3999.912258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.43 seconds Orbital eigenvalues (eV) -41.09983 -39.56655 -38.04313 -37.83655 -34.91124 -33.93782 -32.68717 -32.12098 -30.51486 -29.10508 -27.77553 -26.86681 -26.12818 -25.55414 -23.76012 -22.57665 -22.52072 -21.86692 -20.39180 -19.27256 -18.72305 -17.37558 -17.08932 -16.74190 -16.40869 -15.85918 -15.59121 -15.13939 -14.71269 -14.68396 -14.44136 -14.12715 -13.97174 -13.69158 -13.55618 -13.35506 -13.16241 -13.04822 -12.89768 -12.56661 -12.45649 -12.21873 -12.17738 -12.03673 -11.80196 -11.50227 -11.46094 -11.35634 -11.16005 -10.98216 -10.82703 -10.76479 -10.69126 -10.54362 -10.32476 -10.25262 -9.94895 -9.60405 -9.16528 -8.94055 -8.85763 -8.64649 -6.90524 -5.74550 -3.03102 1.39844 2.18603 3.16033 3.31406 3.45927 3.50272 3.51220 4.08710 4.38257 4.44960 4.55034 4.59568 4.76794 4.78154 4.82328 5.01136 5.06000 5.10430 5.19265 5.26990 5.36311 5.40355 5.42773 5.43793 5.48205 5.58959 5.66505 5.67648 5.70460 5.76521 5.79704 5.83400 5.91910 5.95329 5.98620 6.06306 6.08254 6.10636 6.12644 6.18555 6.37440 6.37856 6.49157 6.65700 6.77186 6.84459 6.94272 7.37584 7.63124 7.71620 7.98510 8.44281 9.55576 10.12208 10.47059 11.48237 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.002721 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.708668 B =10288.269130 C =11504.077119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.116 4.116 5 C -0.136 4.136 6 C 0.068 3.932 7 N -0.583 5.583 8 C 0.515 3.485 9 O -0.522 6.522 10 C 0.519 3.481 11 O -0.513 6.513 12 N -0.584 5.584 13 C 0.091 3.909 14 C -0.126 4.126 15 C -0.079 4.079 16 C -0.132 4.132 17 C 0.167 3.833 18 N -0.730 5.730 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.113 3.887 28 C 0.113 3.887 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.143 0.857 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.019 0.981 46 H 0.024 0.976 47 H 0.384 0.616 48 H 0.256 0.744 49 H 0.072 0.928 50 H 0.096 0.904 51 H 0.094 0.906 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.938 0.569 -0.063 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.094 0.906 4 C -0.154 4.154 5 C -0.174 4.174 6 C -0.054 4.054 7 N -0.316 5.316 8 C 0.298 3.702 9 O -0.398 6.398 10 C 0.303 3.697 11 O -0.391 6.391 12 N -0.316 5.316 13 C -0.031 4.031 14 C -0.165 4.165 15 C -0.081 4.081 16 C -0.190 4.190 17 C 0.039 3.961 18 N -0.375 5.375 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.009 4.009 28 C -0.009 4.009 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.160 0.840 37 H 0.087 0.913 38 H 0.124 0.876 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.037 0.963 46 H 0.042 0.958 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.115 0.885 51 H 0.112 0.888 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.887 0.552 -0.185 24.894 hybrid contribution 0.780 -0.058 -0.572 0.969 sum -24.108 0.494 -0.757 24.124 Atomic orbital electron populations 1.21762 0.94243 1.02079 1.02150 1.21504 0.95989 1.00261 0.94856 0.90633 1.21627 0.95682 1.00724 0.97377 1.21958 0.95587 1.01625 0.98273 1.22901 1.03702 0.96528 0.82235 1.47937 1.06561 1.59156 1.17982 1.20122 0.87655 0.79759 0.82672 1.90652 1.74919 1.38251 1.36001 1.19621 0.86838 0.81682 0.81564 1.90524 1.75477 1.37137 1.36010 1.48671 1.09327 1.45278 1.28345 1.22921 0.99758 0.90789 0.89674 1.22799 0.93491 0.97405 1.02757 1.21688 0.95217 0.94509 0.96644 1.21809 1.00440 1.01891 0.94835 1.20702 0.87911 0.93000 0.94455 1.42384 1.20420 1.14950 1.59766 1.19159 0.97934 0.97973 1.22025 0.91318 1.24723 0.98821 0.96206 1.01099 1.69640 1.32030 1.07423 1.49059 0.86274 0.81981 0.77467 0.80493 1.21322 1.21714 1.21313 1.22434 0.77394 0.97865 1.03186 1.21796 0.78641 1.01069 0.99400 0.92340 0.92215 0.92442 0.91712 0.91643 0.91558 0.90312 0.84028 0.91330 0.87590 0.90741 0.89736 0.90651 0.91103 0.92275 0.93360 0.96314 0.95840 0.78108 0.93457 0.91012 0.88534 0.88808 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.20 37.16 0.34 -0.50 16 2 C -0.11 -0.82 2.87 -90.50 -0.26 -1.08 16 3 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 4 C -0.12 -0.85 5.17 -26.69 -0.14 -0.99 16 5 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 6 C 0.07 0.74 5.98 -3.71 -0.02 0.72 16 7 N -0.58 -6.83 2.97 -173.27 -0.52 -7.35 16 8 C 0.51 7.23 7.69 -11.58 -0.09 7.14 16 9 O -0.52 -7.71 13.22 5.49 0.07 -7.64 16 10 C 0.52 8.24 7.81 -11.58 -0.09 8.15 16 11 O -0.51 -9.08 13.52 5.50 0.07 -9.01 16 12 N -0.58 -8.98 3.29 -170.50 -0.56 -9.54 16 13 C 0.09 1.16 6.51 -2.31 -0.02 1.14 16 14 C -0.13 -1.59 6.16 -25.04 -0.15 -1.75 16 15 C -0.08 -1.25 0.67 -153.14 -0.10 -1.35 16 16 C -0.13 -1.96 8.03 37.16 0.30 -1.67 16 17 C 0.17 3.31 4.91 -4.05 -0.02 3.29 16 18 N -0.73 -18.11 4.88 -59.91 -0.29 -18.40 16 19 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.11 1.90 5.77 -2.99 -0.02 1.88 16 28 C 0.11 1.04 5.73 -3.71 -0.02 1.02 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.14 1.94 4.33 -54.72 -0.24 1.70 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 1.37 5.62 -51.93 -0.29 1.08 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 41 H 0.07 0.97 7.86 -51.93 -0.41 0.56 16 42 H 0.07 1.23 6.99 -51.93 -0.36 0.87 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.38 9.94 6.27 -40.82 -0.26 9.68 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.07 1.19 7.68 -51.93 -0.40 0.79 16 50 H 0.10 1.97 7.33 -51.93 -0.38 1.59 16 51 H 0.09 0.93 7.01 -51.93 -0.36 0.57 16 52 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -31.60 399.09 -9.20 -40.80 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.99 Total: 7.68 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.70 Total: 7.35 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -0.64 Total: -62.71 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.15 Total: -16.65 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.60 -9.20 -40.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270807138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.865 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds