Wall clock time and date at job start Tue Mar 31 2020 21:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.52400 * 2 1 4 4 C 1.53038 * 109.49650 * 239.92314 * 2 1 3 5 5 C 1.53036 * 109.53883 * 178.68212 * 4 2 1 6 6 C 1.53193 * 109.31424 * 61.36346 * 5 4 2 7 7 N 1.46930 * 108.77510 * 305.36785 * 6 5 4 8 8 C 1.34777 * 120.62882 * 233.58679 * 7 6 5 9 9 O 1.21354 * 119.99893 * 171.30054 * 8 7 6 10 10 C 1.49450 * 119.99926 * 351.29498 * 8 7 6 11 11 O 1.21343 * 120.00278 * 353.11840 * 10 8 7 12 12 N 1.34779 * 119.99556 * 173.12228 * 10 8 7 13 13 C 1.48116 * 127.03750 * 359.68196 * 12 10 8 14 14 C 1.54597 * 103.42358 * 219.29163 * 13 12 10 15 15 C 1.54624 * 102.91137 * 322.86593 * 14 13 12 16 16 C 1.53000 * 110.32817 * 262.81044 * 15 14 13 17 17 C 1.52997 * 110.41527 * 140.63968 * 15 14 13 18 18 N 1.46496 * 109.46950 * 182.87485 * 17 15 14 19 19 C 1.36939 * 119.99847 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99808 * 0.02562 * 19 18 17 21 21 C 1.38814 * 120.00020 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00016 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99732 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47087 * 60.00431 * 23 21 19 25 25 H 1.48502 * 109.46734 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47306 * 300.00107 * 23 21 19 27 27 C 1.47490 * 127.02926 * 180.02562 * 12 10 8 28 28 C 1.46928 * 118.73777 * 53.60463 * 7 6 5 29 29 H 1.09000 * 109.47271 * 299.91902 * 1 2 3 30 30 H 1.08999 * 109.46865 * 59.91568 * 1 2 3 31 31 H 1.08997 * 109.47271 * 179.91568 * 1 2 3 32 32 H 1.08998 * 109.46117 * 298.70182 * 4 2 1 33 33 H 1.08994 * 109.46552 * 58.66416 * 4 2 1 34 34 H 1.09001 * 109.50329 * 301.41429 * 5 4 2 35 35 H 1.09004 * 109.50204 * 181.31185 * 5 4 2 36 36 H 1.08998 * 109.59017 * 185.57690 * 6 5 4 37 37 H 1.09004 * 109.58905 * 65.14953 * 6 5 4 38 38 H 1.09001 * 110.66149 * 337.76829 * 13 12 10 39 39 H 1.08996 * 110.66317 * 100.88961 * 13 12 10 40 40 H 1.09001 * 110.83490 * 204.45105 * 14 13 12 41 41 H 1.08998 * 110.57895 * 81.16646 * 14 13 12 42 42 H 1.08999 * 109.47718 * 177.06966 * 16 15 14 43 43 H 1.09000 * 109.47104 * 297.07951 * 16 15 14 44 44 H 1.09003 * 109.47009 * 57.06846 * 16 15 14 45 45 H 1.09005 * 109.46647 * 302.87388 * 17 15 14 46 46 H 1.08992 * 109.47368 * 62.87150 * 17 15 14 47 47 H 0.97000 * 120.00485 * 359.97438 * 18 17 15 48 48 H 0.96996 * 119.99622 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.91369 * 273.87213 * 27 12 10 50 50 H 1.09000 * 109.91660 * 34.96380 * 27 12 10 51 51 H 1.09002 * 109.58062 * 186.60538 * 28 7 6 52 52 H 1.08998 * 109.58487 * 66.18129 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0408 -0.7230 -1.2484 5 6 3.5708 -0.6949 -1.2661 6 6 4.1053 -1.4266 -0.0309 7 7 3.5046 -0.8291 1.1695 8 6 4.2812 -0.3864 2.1782 9 8 3.7894 0.2453 3.0902 10 6 5.7478 -0.6736 2.1735 11 8 6.2195 -1.4086 1.3312 12 7 6.5465 -0.1161 3.1051 13 6 6.1410 0.8027 4.1938 14 6 7.2959 1.8290 4.2462 15 6 8.5433 0.9602 3.9631 16 6 9.2261 0.5673 5.2747 17 6 9.5229 1.7112 3.0592 18 7 10.6630 0.8453 2.7488 19 6 11.6747 1.3057 1.9490 20 1 11.6323 2.3074 1.5474 21 6 12.7553 0.4854 1.6553 22 7 12.8073 -0.7352 2.1451 23 14 14.1357 1.1138 0.5648 24 1 14.7536 2.3112 1.1891 25 1 15.1624 0.0528 0.4051 26 1 13.5883 1.4767 -0.7670 27 6 8.0044 -0.2907 3.2447 28 6 2.0413 -0.7238 1.2495 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0276 -0.0015 32 1 1.6967 -1.7572 -1.2354 33 1 1.6582 -0.2244 -2.1389 34 1 3.9159 0.3389 -1.2541 35 1 3.9334 -1.1896 -2.1672 36 1 5.1896 -1.3246 0.0136 37 1 3.8375 -2.4818 -0.0869 38 1 5.2000 1.2960 3.9502 39 1 6.0620 0.2670 5.1397 40 1 7.3616 2.2888 5.2323 41 1 7.1701 2.5871 3.4732 42 1 10.0719 -0.0867 5.0625 43 1 9.5790 1.4644 5.7835 44 1 8.5137 0.0444 5.9128 45 1 9.0198 1.9949 2.1348 46 1 9.8755 2.6069 3.5706 47 1 10.7013 -0.0543 3.1098 48 1 13.5622 -1.3085 1.9395 49 1 8.2167 -1.1798 3.8383 50 1 8.4632 -0.3834 2.2603 51 1 1.7638 -0.1580 2.1389 52 1 1.6053 -1.7216 1.2979 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270807138.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:04 Heat of formation + Delta-G solvation = -65.079887 kcal Electronic energy + Delta-G solvation = -30641.355210 eV Core-core repulsion = 26640.601017 eV Total energy + Delta-G solvation = -4000.754194 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.21287 -40.68542 -39.25514 -38.81705 -36.54898 -34.89995 -34.27062 -32.88141 -32.31176 -30.40352 -28.78640 -27.76920 -27.55459 -26.75389 -25.33733 -23.83283 -23.30557 -23.18209 -21.17410 -20.35481 -20.10297 -19.17053 -18.23958 -17.95137 -17.63492 -16.98632 -16.67304 -16.48582 -16.09888 -15.63283 -15.55992 -15.27459 -15.20878 -15.13865 -14.83235 -14.51973 -14.41425 -14.12135 -13.90916 -13.71661 -13.54834 -13.45547 -13.13232 -13.05238 -12.87913 -12.83711 -12.74581 -12.64537 -12.40002 -12.20622 -12.07015 -12.02861 -11.87194 -11.78176 -11.65711 -11.42602 -11.35770 -11.28463 -10.93809 -10.28624 -9.97457 -9.77892 -8.98612 -7.94435 -5.22595 0.23119 1.09863 1.46240 1.49370 1.55343 1.99043 2.25617 2.55935 3.00917 3.38297 3.50893 3.60157 3.71532 3.76637 3.82646 3.89718 4.03070 4.15961 4.26946 4.28814 4.35073 4.37677 4.39068 4.53989 4.63692 4.65698 4.70155 4.73190 4.75396 4.82364 4.85963 4.87744 4.93957 4.96037 5.03601 5.04193 5.05615 5.11948 5.14648 5.23375 5.25887 5.29729 5.31988 5.38166 5.47596 5.48618 5.53104 5.92552 6.19483 6.27657 6.52110 6.80876 7.34565 8.10047 8.33909 9.28823 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.002721 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.708668 B =10288.269130 C =11504.077119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.061 0.939 4 C -0.112 4.112 5 C -0.132 4.132 6 C 0.066 3.934 7 N -0.577 5.577 8 C 0.515 3.485 9 O -0.531 6.531 10 C 0.510 3.490 11 O -0.541 6.541 12 N -0.587 5.587 13 C 0.094 3.906 14 C -0.114 4.114 15 C -0.071 4.071 16 C -0.126 4.126 17 C 0.167 3.833 18 N -0.740 5.740 19 C -0.246 4.246 20 H 0.073 0.927 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.972 3.028 24 H -0.276 1.276 25 H -0.295 1.295 26 H -0.281 1.281 27 C 0.119 3.881 28 C 0.110 3.890 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.114 0.886 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.007 0.993 46 H 0.032 0.968 47 H 0.376 0.624 48 H 0.251 0.749 49 H 0.072 0.928 50 H 0.053 0.947 51 H 0.087 0.913 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.150 1.529 0.218 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 H 0.080 0.920 4 C -0.149 4.149 5 C -0.171 4.171 6 C -0.055 4.055 7 N -0.309 5.309 8 C 0.298 3.702 9 O -0.409 6.409 10 C 0.294 3.706 11 O -0.421 6.421 12 N -0.319 5.319 13 C -0.027 4.027 14 C -0.153 4.153 15 C -0.072 4.072 16 C -0.183 4.183 17 C 0.040 3.960 18 N -0.384 5.384 19 C -0.377 4.377 20 H 0.091 0.909 21 C -0.266 4.266 22 N -0.619 5.619 23 Si 0.801 3.199 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.208 1.208 27 C -0.003 4.003 28 C -0.011 4.011 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.131 0.869 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.025 0.975 46 H 0.050 0.950 47 H 0.209 0.791 48 H 0.060 0.940 49 H 0.090 0.910 50 H 0.071 0.929 51 H 0.105 0.895 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -27.152 1.555 0.094 27.196 hybrid contribution 1.407 -0.354 -0.700 1.611 sum -25.745 1.201 -0.606 25.780 Atomic orbital electron populations 1.21726 0.92430 1.02917 1.02643 1.21474 0.97364 0.99200 0.94151 0.92044 1.21618 0.94021 1.01588 0.97699 1.21933 0.97077 1.00546 0.97501 1.22838 1.02178 0.97552 0.82916 1.48073 1.07624 1.57937 1.17313 1.19768 0.86776 0.80332 0.83357 1.90637 1.74703 1.39071 1.36534 1.20157 0.87914 0.81347 0.81190 1.90537 1.76322 1.38300 1.36955 1.48805 1.08561 1.45580 1.28955 1.23076 0.99708 0.90397 0.89496 1.22799 0.91162 0.96769 1.04529 1.21578 0.95533 0.94083 0.96011 1.21751 0.99908 1.02041 0.94598 1.20833 0.87239 0.93053 0.94867 1.42557 1.21228 1.15233 1.59341 1.19568 0.98498 0.98044 1.21634 0.90917 1.25534 1.01453 0.96564 1.03069 1.69802 1.32626 1.08626 1.50799 0.85239 0.78910 0.76954 0.78819 1.20176 1.22136 1.20765 1.22203 0.78525 0.98743 1.00876 1.22037 0.76763 1.02268 1.00061 0.92218 0.91416 0.91414 0.90513 0.90313 0.92896 0.89168 0.86859 0.90134 0.87312 0.88786 0.86456 0.90853 0.94294 0.91125 0.90455 0.97491 0.95017 0.79087 0.94019 0.91001 0.92877 0.89456 0.89280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.20 71.98 0.66 -0.60 16 2 C -0.10 -1.38 2.87 -10.72 -0.03 -1.41 16 3 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 4 C -0.11 -1.38 5.17 30.62 0.16 -1.22 16 5 C -0.13 -2.24 6.08 30.67 0.19 -2.06 16 6 C 0.07 1.45 5.98 86.36 0.52 1.97 16 7 N -0.58 -13.24 2.97 -820.47 -2.44 -15.68 16 8 C 0.52 14.43 7.69 87.27 0.67 15.10 16 9 O -0.53 -15.27 13.22 -3.26 -0.04 -15.31 16 10 C 0.51 16.63 7.81 87.27 0.68 17.31 16 11 O -0.54 -20.22 13.52 -3.22 -0.04 -20.26 16 12 N -0.59 -18.18 3.29 -811.69 -2.67 -20.85 16 13 C 0.09 2.24 6.51 86.61 0.56 2.80 16 14 C -0.11 -2.64 6.16 31.69 0.20 -2.44 16 15 C -0.07 -2.19 0.67 -51.30 -0.03 -2.23 16 16 C -0.13 -3.57 8.03 71.98 0.58 -2.99 16 17 C 0.17 6.66 4.91 86.38 0.42 7.09 16 18 N -0.74 -37.77 4.88 -343.46 -1.68 -39.44 16 19 C -0.25 -13.93 9.99 84.03 0.84 -13.09 16 20 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 21 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 22 N -0.97 -60.02 13.06 21.65 0.28 -59.74 16 23 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 26 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 27 C 0.12 4.14 5.77 86.52 0.50 4.64 16 28 C 0.11 1.84 5.73 86.36 0.49 2.34 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.11 3.26 4.33 -46.52 -0.20 3.06 16 37 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.11 2.62 5.62 -2.39 -0.01 2.61 16 39 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.12 2.01 7.85 -2.39 -0.02 1.99 16 41 H 0.07 1.76 7.86 -2.39 -0.02 1.74 16 42 H 0.04 1.36 6.99 -2.39 -0.02 1.34 16 43 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 46 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.38 20.29 6.27 -92.71 -0.58 19.71 16 48 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 49 H 0.07 2.46 7.68 -2.39 -0.02 2.44 16 50 H 0.05 2.31 7.33 -2.39 -0.02 2.29 16 51 H 0.09 1.62 7.01 -2.39 -0.02 1.60 16 52 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -70.37 399.09 2.44 -67.93 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.13 Total: 33.02 kcal Atomic # 6 Polarization: 14.50 SS G_CDS: 6.87 Total: 21.37 kcal Atomic # 7 Polarization: -129.21 SS G_CDS: -6.51 Total: -135.72 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.09 Total: -35.58 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -70.37 2.44 -67.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270807138.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.848 kcal (2) G-P(sol) polarization free energy of solvation -70.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds