Wall clock time and date at job start Tue Mar 31 2020 21:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.52473 * 2 1 4 4 C 1.53045 * 109.49889 * 120.08050 * 2 1 3 5 5 C 1.53039 * 109.53687 * 181.31601 * 4 2 1 6 6 C 1.53189 * 109.31435 * 298.63587 * 5 4 2 7 7 N 1.46918 * 108.77599 * 54.63375 * 6 5 4 8 8 C 1.34784 * 120.62920 * 126.36980 * 7 6 5 9 9 O 1.21346 * 120.00101 * 188.61572 * 8 7 6 10 10 C 1.49453 * 119.99752 * 8.61294 * 8 7 6 11 11 O 1.21340 * 120.00159 * 6.69566 * 10 8 7 12 12 N 1.34777 * 119.99593 * 186.69975 * 10 8 7 13 13 C 1.47425 * 125.65075 * 0.04103 * 12 10 8 14 14 C 1.55125 * 104.94064 * 203.96762 * 13 12 10 15 15 C 1.55153 * 101.48666 * 323.22322 * 14 13 12 16 16 C 1.53005 * 110.71569 * 276.83037 * 15 14 13 17 17 C 1.52998 * 110.72278 * 153.73744 * 15 14 13 18 18 N 1.46491 * 109.47580 * 182.43820 * 17 15 14 19 19 C 1.36935 * 120.00557 * 179.72240 * 18 17 15 20 20 H 1.08003 * 119.99768 * 0.27494 * 19 18 17 21 21 C 1.38804 * 120.00518 * 180.27775 * 19 18 17 22 22 N 1.31626 * 119.99871 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00243 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47239 * 60.00039 * 23 21 19 25 25 H 1.48508 * 109.47163 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47016 * 299.99778 * 23 21 19 27 27 C 1.47029 * 125.64726 * 179.97438 * 12 10 8 28 28 C 1.46930 * 118.74348 * 306.64455 * 7 6 5 29 29 H 1.09000 * 109.47179 * 299.91988 * 1 2 3 30 30 H 1.08999 * 109.46913 * 59.91801 * 1 2 3 31 31 H 1.09000 * 109.47226 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.45872 * 61.29126 * 4 2 1 33 33 H 1.09001 * 109.45996 * 301.33720 * 4 2 1 34 34 H 1.09002 * 109.49150 * 178.68189 * 5 4 2 35 35 H 1.09004 * 109.52501 * 58.60553 * 5 4 2 36 36 H 1.08999 * 109.58208 * 294.84892 * 6 5 4 37 37 H 1.09000 * 109.70179 * 174.49476 * 6 5 4 38 38 H 1.09000 * 110.36580 * 322.92963 * 13 12 10 39 39 H 1.08998 * 110.36414 * 85.25411 * 13 12 10 40 40 H 1.09002 * 111.16059 * 205.12416 * 14 13 12 41 41 H 1.08997 * 110.93426 * 81.21623 * 14 13 12 42 42 H 1.09000 * 109.47086 * 297.55471 * 16 15 14 43 43 H 1.08996 * 109.47266 * 57.56532 * 16 15 14 44 44 H 1.09001 * 109.46750 * 177.56378 * 16 15 14 45 45 H 1.08998 * 109.47392 * 62.43004 * 17 15 14 46 46 H 1.09006 * 109.46430 * 302.43897 * 17 15 14 47 47 H 0.97006 * 119.99479 * 0.02562 * 18 17 15 48 48 H 0.96996 * 119.99745 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.87972 * 59.55298 * 27 12 10 50 50 H 1.09002 * 109.87711 * 298.39225 * 27 12 10 51 51 H 1.08993 * 109.58720 * 173.13951 * 28 7 6 52 52 H 1.08993 * 109.58313 * 293.57193 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0409 -0.7231 1.2484 5 6 3.5709 -0.6950 1.2660 6 6 4.1053 -1.4266 0.0307 7 7 3.5046 -0.8291 -1.1695 8 6 4.2812 -0.3856 -2.1779 9 8 3.7891 0.2448 -3.0906 10 6 5.7484 -0.6701 -2.1719 11 8 6.2212 -1.4011 -1.3267 12 7 6.5463 -0.1146 -3.1053 13 6 6.1066 0.7886 -4.1844 14 6 7.1862 0.6470 -5.2892 15 6 8.4774 0.4970 -4.4421 16 6 9.0078 1.8677 -4.0165 17 6 9.5456 -0.2781 -5.2160 18 7 10.7295 -0.4541 -4.3712 19 6 11.8200 -1.1281 -4.8523 20 1 11.8090 -1.5262 -5.8563 21 6 12.9395 -1.2999 -4.0499 22 7 12.9530 -0.8143 -2.8265 23 14 14.4268 -2.2200 -4.7061 24 1 14.9504 -1.5218 -5.9075 25 1 15.4815 -2.2651 -3.6615 26 1 14.0312 -3.6041 -5.0709 27 6 7.9997 -0.3079 -3.2152 28 6 2.0415 -0.7187 -1.2472 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6967 -1.7572 1.2354 33 1 1.6582 -0.2245 2.1389 34 1 3.9334 -1.1897 2.1671 35 1 3.9164 0.3388 1.2544 36 1 3.8375 -2.4817 0.0868 37 1 5.1898 -1.3268 -0.0149 38 1 5.1321 0.4807 -4.5633 39 1 6.0674 1.8171 -3.8257 40 1 7.2298 1.5396 -5.9134 41 1 7.0102 -0.2425 -5.8940 42 1 9.2757 2.4444 -4.9018 43 1 8.2372 2.3978 -3.4569 44 1 9.8885 1.7372 -3.3878 45 1 9.8188 0.2771 -6.1133 46 1 9.1525 -1.2547 -5.4986 47 1 10.7391 -0.0969 -3.4694 48 1 13.7352 -0.9347 -2.2657 49 1 8.2233 -1.3655 -3.3558 50 1 8.4917 0.0608 -2.3152 51 1 1.7647 -0.1496 -2.1345 52 1 1.6021 -1.7149 -1.2975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270807139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:15 Heat of formation + Delta-G solvation = -47.851763 kcal Electronic energy + Delta-G solvation = -30462.607625 eV Core-core repulsion = 26462.600499 eV Total energy + Delta-G solvation = -4000.007126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.14693 -39.60719 -38.06728 -37.86587 -34.94732 -33.96534 -32.68365 -32.15890 -30.52032 -29.08438 -27.79076 -26.92040 -26.25083 -25.53340 -23.78229 -22.60195 -22.48652 -21.88708 -20.41414 -19.29574 -18.77100 -17.37334 -17.11910 -16.79021 -16.34214 -16.05209 -15.52836 -15.22193 -14.67815 -14.64165 -14.49239 -14.13112 -13.95543 -13.84024 -13.57286 -13.30713 -13.16736 -13.09635 -12.92821 -12.75231 -12.46179 -12.20419 -12.18503 -12.01510 -11.78481 -11.62800 -11.51679 -11.38716 -11.19397 -11.01754 -10.82033 -10.78693 -10.70880 -10.52391 -10.33442 -10.30113 -9.96348 -9.61088 -9.20967 -8.97495 -8.86418 -8.60341 -6.91447 -5.75138 -3.03916 1.37119 2.17256 3.13258 3.29837 3.45555 3.49931 3.50874 4.06313 4.35299 4.42707 4.51676 4.58027 4.70079 4.74048 4.78089 4.98438 5.05076 5.07561 5.16738 5.23982 5.34028 5.38531 5.39664 5.42298 5.45932 5.58609 5.63400 5.65703 5.67329 5.73698 5.77357 5.80002 5.92112 5.92537 6.01617 6.04370 6.05678 6.09446 6.13692 6.17488 6.32226 6.37239 6.44774 6.64319 6.74015 6.82473 6.91914 7.31874 7.60561 7.70929 7.95495 8.43566 9.54887 10.11475 10.46181 11.47586 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020544 B = 0.002391 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.633751 B =11710.164347 C =12580.600789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.067 3.933 7 N -0.583 5.583 8 C 0.514 3.486 9 O -0.521 6.521 10 C 0.515 3.485 11 O -0.515 6.515 12 N -0.580 5.580 13 C 0.094 3.906 14 C -0.125 4.125 15 C -0.078 4.078 16 C -0.132 4.132 17 C 0.169 3.831 18 N -0.731 5.731 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.118 3.882 28 C 0.113 3.887 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.143 0.857 38 H 0.101 0.899 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.071 0.929 45 H 0.026 0.974 46 H 0.021 0.979 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.094 0.906 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.533 3.677 5.050 26.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.174 4.174 6 C -0.054 4.054 7 N -0.317 5.317 8 C 0.297 3.703 9 O -0.397 6.397 10 C 0.298 3.702 11 O -0.393 6.393 12 N -0.313 5.313 13 C -0.028 4.028 14 C -0.163 4.163 15 C -0.079 4.079 16 C -0.190 4.190 17 C 0.041 3.959 18 N -0.376 5.376 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.003 4.003 28 C -0.009 4.009 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.160 0.840 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.044 0.956 46 H 0.039 0.961 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.100 0.900 50 H 0.095 0.905 51 H 0.112 0.888 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.458 3.500 4.955 26.171 hybrid contribution 0.806 -0.453 0.097 0.929 sum -24.652 3.048 5.052 25.349 Atomic orbital electron populations 1.21762 0.94196 1.02112 1.02160 1.21427 0.96033 1.00260 0.94893 0.90694 1.21629 0.95650 1.00763 0.97379 1.21953 0.95637 1.01532 0.98274 1.22909 1.03712 0.96573 0.82245 1.47931 1.06559 1.59179 1.17986 1.20114 0.87689 0.79763 0.82732 1.90675 1.75043 1.38394 1.35592 1.19673 0.86876 0.81660 0.81948 1.90507 1.75505 1.37267 1.36046 1.48419 1.09233 1.45289 1.28346 1.22758 0.99616 0.93615 0.86808 1.22962 0.93450 1.03128 0.96778 1.21846 0.95234 0.96449 0.94338 1.21767 1.01057 0.94499 1.01657 1.20642 0.86591 0.95638 0.93060 1.42377 1.12470 1.67507 1.15204 1.19162 0.92612 1.27437 0.97922 0.91257 1.24731 0.98429 1.01510 0.96224 1.69644 1.30067 1.50597 1.07826 0.86269 0.82670 0.79680 0.77553 1.21317 1.21728 1.21303 1.22281 0.77172 1.01750 0.99088 1.21703 0.78691 1.01130 0.99404 0.92217 0.92316 0.92418 0.91683 0.91652 0.90349 0.91634 0.91349 0.84003 0.88130 0.91130 0.89515 0.90361 0.92279 0.93500 0.91023 0.95645 0.96092 0.78098 0.93453 0.89956 0.90469 0.88799 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.20 37.16 0.34 -0.46 16 2 C -0.11 -0.78 2.86 -90.72 -0.26 -1.04 16 3 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 4 C -0.12 -0.80 5.17 -26.69 -0.14 -0.94 16 5 C -0.14 -1.12 6.08 -26.61 -0.16 -1.28 16 6 C 0.07 0.70 5.99 -3.72 -0.02 0.68 16 7 N -0.58 -6.62 2.98 -173.55 -0.52 -7.14 16 8 C 0.51 7.05 7.69 -11.58 -0.09 6.96 16 9 O -0.52 -7.59 13.20 5.50 0.07 -7.51 16 10 C 0.52 7.93 7.77 -11.58 -0.09 7.84 16 11 O -0.51 -8.78 13.51 5.51 0.07 -8.70 16 12 N -0.58 -8.75 3.33 -170.89 -0.57 -9.32 16 13 C 0.09 1.20 5.87 -2.41 -0.01 1.19 16 14 C -0.12 -1.56 6.04 -24.47 -0.15 -1.70 16 15 C -0.08 -1.21 0.61 -152.68 -0.09 -1.30 16 16 C -0.13 -2.00 8.23 37.16 0.31 -1.70 16 17 C 0.17 3.27 5.08 -4.05 -0.02 3.25 16 18 N -0.73 -17.98 5.15 -59.92 -0.31 -18.29 16 19 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 20 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.07 13.06 55.49 0.72 -27.35 16 23 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 27 C 0.12 1.99 5.60 -3.06 -0.02 1.97 16 28 C 0.11 1.01 5.70 -3.93 -0.02 0.99 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.14 1.84 4.30 -54.83 -0.24 1.60 16 38 H 0.10 1.30 6.00 -51.93 -0.31 0.98 16 39 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 40 H 0.09 0.92 8.04 -51.93 -0.42 0.50 16 41 H 0.08 0.97 8.05 -51.93 -0.42 0.55 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.62 7.52 -51.93 -0.39 0.23 16 44 H 0.07 1.27 6.90 -51.93 -0.36 0.91 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 47 H 0.38 9.92 6.29 -40.82 -0.26 9.66 16 48 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 49 H 0.08 1.56 7.80 -51.93 -0.41 1.16 16 50 H 0.08 1.39 7.84 -51.93 -0.41 0.98 16 51 H 0.09 0.92 7.00 -51.93 -0.36 0.55 16 52 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 398.93 15.07 6.01 6.01 Total: -1.00 -31.33 398.93 -9.22 -40.55 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -9.01 Total: 7.14 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.67 Total: 7.19 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -0.67 Total: -62.09 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: 0.15 Total: -16.22 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.33 -9.22 -40.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270807139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.303 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds