Wall clock time and date at job start Tue Mar 31 2020 21:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.52473 * 2 1 4 4 C 1.53045 * 109.49889 * 120.08050 * 2 1 3 5 5 C 1.53039 * 109.53687 * 181.31601 * 4 2 1 6 6 C 1.53189 * 109.31435 * 298.63587 * 5 4 2 7 7 N 1.46918 * 108.77599 * 54.63375 * 6 5 4 8 8 C 1.34784 * 120.62920 * 126.36980 * 7 6 5 9 9 O 1.21346 * 120.00101 * 188.61572 * 8 7 6 10 10 C 1.49453 * 119.99752 * 8.61294 * 8 7 6 11 11 O 1.21340 * 120.00159 * 6.69566 * 10 8 7 12 12 N 1.34777 * 119.99593 * 186.69975 * 10 8 7 13 13 C 1.47425 * 125.65075 * 0.04103 * 12 10 8 14 14 C 1.55125 * 104.94064 * 203.96762 * 13 12 10 15 15 C 1.55153 * 101.48666 * 323.22322 * 14 13 12 16 16 C 1.53005 * 110.71569 * 276.83037 * 15 14 13 17 17 C 1.52998 * 110.72278 * 153.73744 * 15 14 13 18 18 N 1.46491 * 109.47580 * 182.43820 * 17 15 14 19 19 C 1.36935 * 120.00557 * 179.72240 * 18 17 15 20 20 H 1.08003 * 119.99768 * 0.27494 * 19 18 17 21 21 C 1.38804 * 120.00518 * 180.27775 * 19 18 17 22 22 N 1.31626 * 119.99871 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00243 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47239 * 60.00039 * 23 21 19 25 25 H 1.48508 * 109.47163 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47016 * 299.99778 * 23 21 19 27 27 C 1.47029 * 125.64726 * 179.97438 * 12 10 8 28 28 C 1.46930 * 118.74348 * 306.64455 * 7 6 5 29 29 H 1.09000 * 109.47179 * 299.91988 * 1 2 3 30 30 H 1.08999 * 109.46913 * 59.91801 * 1 2 3 31 31 H 1.09000 * 109.47226 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.45872 * 61.29126 * 4 2 1 33 33 H 1.09001 * 109.45996 * 301.33720 * 4 2 1 34 34 H 1.09002 * 109.49150 * 178.68189 * 5 4 2 35 35 H 1.09004 * 109.52501 * 58.60553 * 5 4 2 36 36 H 1.08999 * 109.58208 * 294.84892 * 6 5 4 37 37 H 1.09000 * 109.70179 * 174.49476 * 6 5 4 38 38 H 1.09000 * 110.36580 * 322.92963 * 13 12 10 39 39 H 1.08998 * 110.36414 * 85.25411 * 13 12 10 40 40 H 1.09002 * 111.16059 * 205.12416 * 14 13 12 41 41 H 1.08997 * 110.93426 * 81.21623 * 14 13 12 42 42 H 1.09000 * 109.47086 * 297.55471 * 16 15 14 43 43 H 1.08996 * 109.47266 * 57.56532 * 16 15 14 44 44 H 1.09001 * 109.46750 * 177.56378 * 16 15 14 45 45 H 1.08998 * 109.47392 * 62.43004 * 17 15 14 46 46 H 1.09006 * 109.46430 * 302.43897 * 17 15 14 47 47 H 0.97006 * 119.99479 * 0.02562 * 18 17 15 48 48 H 0.96996 * 119.99745 * 179.97438 * 22 21 19 49 49 H 1.09005 * 109.87972 * 59.55298 * 27 12 10 50 50 H 1.09002 * 109.87711 * 298.39225 * 27 12 10 51 51 H 1.08993 * 109.58720 * 173.13951 * 28 7 6 52 52 H 1.08993 * 109.58313 * 293.57193 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0409 -0.7231 1.2484 5 6 3.5709 -0.6950 1.2660 6 6 4.1053 -1.4266 0.0307 7 7 3.5046 -0.8291 -1.1695 8 6 4.2812 -0.3856 -2.1779 9 8 3.7891 0.2448 -3.0906 10 6 5.7484 -0.6701 -2.1719 11 8 6.2212 -1.4011 -1.3267 12 7 6.5463 -0.1146 -3.1053 13 6 6.1066 0.7886 -4.1844 14 6 7.1862 0.6470 -5.2892 15 6 8.4774 0.4970 -4.4421 16 6 9.0078 1.8677 -4.0165 17 6 9.5456 -0.2781 -5.2160 18 7 10.7295 -0.4541 -4.3712 19 6 11.8200 -1.1281 -4.8523 20 1 11.8090 -1.5262 -5.8563 21 6 12.9395 -1.2999 -4.0499 22 7 12.9530 -0.8143 -2.8265 23 14 14.4268 -2.2200 -4.7061 24 1 14.9504 -1.5218 -5.9075 25 1 15.4815 -2.2651 -3.6615 26 1 14.0312 -3.6041 -5.0709 27 6 7.9997 -0.3079 -3.2152 28 6 2.0415 -0.7187 -1.2472 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6967 -1.7572 1.2354 33 1 1.6582 -0.2245 2.1389 34 1 3.9334 -1.1897 2.1671 35 1 3.9164 0.3388 1.2544 36 1 3.8375 -2.4817 0.0868 37 1 5.1898 -1.3268 -0.0149 38 1 5.1321 0.4807 -4.5633 39 1 6.0674 1.8171 -3.8257 40 1 7.2298 1.5396 -5.9134 41 1 7.0102 -0.2425 -5.8940 42 1 9.2757 2.4444 -4.9018 43 1 8.2372 2.3978 -3.4569 44 1 9.8885 1.7372 -3.3878 45 1 9.8188 0.2771 -6.1133 46 1 9.1525 -1.2547 -5.4986 47 1 10.7391 -0.0969 -3.4694 48 1 13.7352 -0.9347 -2.2657 49 1 8.2233 -1.3655 -3.3558 50 1 8.4917 0.0608 -2.3152 51 1 1.7647 -0.1496 -2.1345 52 1 1.6021 -1.7149 -1.2975 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270807139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:10 Heat of formation + Delta-G solvation = -67.037518 kcal Electronic energy + Delta-G solvation = -30463.439582 eV Core-core repulsion = 26462.600499 eV Total energy + Delta-G solvation = -4000.839083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.23989 -40.69864 -39.25921 -38.81840 -36.56415 -34.90038 -34.25809 -32.88029 -32.29191 -30.38552 -28.79331 -27.86572 -27.53565 -26.78267 -25.31160 -23.81497 -23.29852 -23.15176 -21.17126 -20.37058 -20.11272 -19.15572 -18.24075 -18.01457 -17.48723 -17.20440 -16.64041 -16.31668 -16.22045 -15.58377 -15.42746 -15.34472 -15.24774 -15.14753 -14.78051 -14.64794 -14.28769 -14.19312 -14.03387 -13.68400 -13.58201 -13.41280 -13.16481 -13.06395 -12.91601 -12.81806 -12.73699 -12.68941 -12.41082 -12.20116 -12.05813 -12.03632 -11.83731 -11.78841 -11.62458 -11.49101 -11.35300 -11.27490 -10.92468 -10.33118 -9.92156 -9.76080 -8.97189 -7.93062 -5.21260 0.22738 1.10420 1.47610 1.50583 1.56492 1.98862 2.25662 2.57127 3.00415 3.38597 3.46452 3.55459 3.72298 3.78053 3.83268 3.90028 4.04003 4.12003 4.26029 4.28361 4.34138 4.36407 4.38579 4.54442 4.64048 4.64438 4.69762 4.73786 4.77060 4.82478 4.86564 4.88223 4.93627 4.96854 5.04932 5.05152 5.06793 5.10876 5.15290 5.19005 5.25924 5.27815 5.30671 5.38895 5.47596 5.48668 5.51807 5.92526 6.16154 6.28869 6.51767 6.80555 7.35771 8.11663 8.34642 9.30256 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020544 B = 0.002391 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.633751 B =11710.164347 C =12580.600789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.062 0.938 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.065 3.935 7 N -0.577 5.577 8 C 0.514 3.486 9 O -0.532 6.532 10 C 0.507 3.493 11 O -0.539 6.539 12 N -0.582 5.582 13 C 0.097 3.903 14 C -0.112 4.112 15 C -0.070 4.070 16 C -0.125 4.125 17 C 0.167 3.833 18 N -0.742 5.742 19 C -0.243 4.243 20 H 0.076 0.924 21 C -0.076 4.076 22 N -0.969 5.969 23 Si 0.972 3.028 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.280 1.280 27 C 0.126 3.874 28 C 0.109 3.891 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.038 0.962 45 H 0.036 0.964 46 H 0.018 0.982 47 H 0.375 0.625 48 H 0.250 0.750 49 H 0.053 0.947 50 H 0.056 0.944 51 H 0.086 0.914 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.773 4.038 4.320 28.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.122 4.122 3 H 0.081 0.919 4 C -0.150 4.150 5 C -0.169 4.169 6 C -0.056 4.056 7 N -0.309 5.309 8 C 0.297 3.703 9 O -0.410 6.410 10 C 0.291 3.709 11 O -0.419 6.419 12 N -0.315 5.315 13 C -0.024 4.024 14 C -0.150 4.150 15 C -0.071 4.071 16 C -0.183 4.183 17 C 0.041 3.959 18 N -0.385 5.385 19 C -0.375 4.375 20 H 0.094 0.906 21 C -0.268 4.268 22 N -0.620 5.620 23 Si 0.801 3.199 24 H -0.202 1.202 25 H -0.224 1.224 26 H -0.207 1.207 27 C 0.004 3.996 28 C -0.012 4.012 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.135 0.865 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.036 0.964 47 H 0.208 0.792 48 H 0.059 0.941 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.105 0.895 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -27.754 3.863 4.195 28.334 hybrid contribution 1.426 -0.599 0.340 1.584 sum -26.328 3.264 4.535 26.915 Atomic orbital electron populations 1.21729 0.92497 1.02870 1.02650 1.21396 0.97316 0.99282 0.94166 0.91940 1.21623 0.94189 1.01508 0.97666 1.21925 0.96928 1.00637 0.97452 1.22866 1.02337 0.97486 0.82916 1.48070 1.07572 1.57935 1.17360 1.19766 0.86828 0.80336 0.83398 1.90660 1.74848 1.39289 1.36166 1.20185 0.87887 0.81259 0.81537 1.90522 1.76294 1.38234 1.36885 1.48506 1.08348 1.45661 1.28948 1.22887 0.99725 0.93724 0.86055 1.22974 0.90713 1.04817 0.96477 1.21719 0.95578 0.95817 0.93945 1.21689 1.00278 0.94403 1.01883 1.20793 0.85879 0.96129 0.93127 1.42576 1.13452 1.67094 1.15424 1.19591 0.93360 1.26495 0.98042 0.90599 1.25547 1.01439 1.03211 0.96649 1.69811 1.30556 1.52526 1.09118 0.85229 0.79099 0.78612 0.76918 1.20221 1.22350 1.20654 1.22003 0.78575 1.00063 0.98960 1.21934 0.76902 1.02222 1.00112 0.91353 0.92264 0.91509 0.90668 0.90255 0.89086 0.92666 0.90379 0.86563 0.87697 0.89816 0.86504 0.89970 0.90876 0.91458 0.94327 0.94609 0.96424 0.79205 0.94100 0.92889 0.92530 0.89537 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.20 71.98 0.66 -0.53 16 2 C -0.10 -1.29 2.86 -10.86 -0.03 -1.32 16 3 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 4 C -0.11 -1.28 5.17 30.62 0.16 -1.12 16 5 C -0.13 -2.01 6.08 30.67 0.19 -1.83 16 6 C 0.07 1.34 5.99 86.36 0.52 1.86 16 7 N -0.58 -12.74 2.98 -821.33 -2.45 -15.19 16 8 C 0.51 13.99 7.69 87.27 0.67 14.66 16 9 O -0.53 -15.03 13.20 -3.24 -0.04 -15.07 16 10 C 0.51 15.99 7.77 87.27 0.68 16.66 16 11 O -0.54 -19.29 13.51 -3.22 -0.04 -19.34 16 12 N -0.58 -17.69 3.33 -812.93 -2.71 -20.39 16 13 C 0.10 2.32 5.87 86.93 0.51 2.83 16 14 C -0.11 -2.53 6.04 32.06 0.19 -2.34 16 15 C -0.07 -2.14 0.61 -51.00 -0.03 -2.17 16 16 C -0.13 -3.69 8.23 71.98 0.59 -3.10 16 17 C 0.17 6.47 5.08 86.38 0.44 6.91 16 18 N -0.74 -37.30 5.15 -343.47 -1.77 -39.07 16 19 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 20 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 22 N -0.97 -59.97 13.06 21.65 0.28 -59.69 16 23 Si 0.97 46.64 29.55 68.60 2.03 48.66 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 C 0.13 4.40 5.60 86.72 0.49 4.89 16 28 C 0.11 1.79 5.70 86.22 0.49 2.28 16 29 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.12 3.12 4.30 -48.28 -0.21 2.92 16 38 H 0.11 2.51 6.00 -2.39 -0.01 2.49 16 39 H 0.08 1.81 7.77 -2.39 -0.02 1.80 16 40 H 0.12 2.02 8.04 -2.39 -0.02 2.00 16 41 H 0.08 1.84 8.05 -2.39 -0.02 1.82 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 1.70 7.52 -2.39 -0.02 1.68 16 44 H 0.04 1.39 6.90 -2.39 -0.02 1.38 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.02 0.71 8.12 -2.38 -0.02 0.69 16 47 H 0.38 20.15 6.29 -92.70 -0.58 19.56 16 48 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 49 H 0.05 2.13 7.80 -2.38 -0.02 2.11 16 50 H 0.06 2.17 7.84 -2.39 -0.02 2.16 16 51 H 0.09 1.58 7.00 -2.39 -0.02 1.56 16 52 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -69.11 398.93 2.26 -66.85 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.12 Total: 32.24 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 6.83 Total: 20.99 kcal Atomic # 7 Polarization: -127.70 SS G_CDS: -6.64 Total: -134.34 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.09 Total: -34.40 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.66 kcal Total: -69.11 2.26 -66.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270807139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.188 kcal (2) G-P(sol) polarization free energy of solvation -69.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds