Wall clock time and date at job start Tue Mar 31 2020 21:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.47004 * 2 1 4 4 C 1.52998 * 109.47096 * 119.99568 * 2 1 3 5 5 C 1.52995 * 109.47341 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47209 * 300.00515 * 5 4 2 7 7 H 1.09003 * 109.47018 * 299.99758 * 6 5 4 8 8 C 1.50698 * 109.47492 * 179.97438 * 6 5 4 9 9 O 1.21283 * 119.99914 * 359.97438 * 8 6 5 10 10 N 1.34770 * 120.00404 * 179.97438 * 8 6 5 11 11 C 1.46507 * 120.00270 * 179.97438 * 10 8 6 12 12 C 1.50697 * 109.47113 * 179.97438 * 11 10 8 13 13 C 1.31001 * 119.99601 * 127.00198 * 12 11 10 14 14 C 1.50693 * 120.00265 * 7.56479 * 13 12 11 15 15 N 1.46900 * 109.47562 * 127.15626 * 14 13 12 16 16 C 1.46896 * 111.00315 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47310 * 180.02562 * 16 15 14 18 18 O 1.21294 * 120.00005 * 359.97438 * 17 16 15 19 19 N 1.34770 * 120.00239 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00254 * 179.97438 * 19 17 16 21 21 H 1.07994 * 119.99693 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00252 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99594 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00003 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47285 * 60.00561 * 24 22 20 26 26 H 1.48500 * 109.47085 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47123 * 300.00199 * 24 22 20 28 28 C 1.52998 * 109.47389 * 59.99514 * 6 5 4 29 29 C 1.52995 * 109.47341 * 300.00405 * 28 6 5 30 30 H 1.09000 * 109.47349 * 300.00078 * 1 2 3 31 31 H 1.08998 * 109.46809 * 60.00205 * 1 2 3 32 32 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46841 * 60.00332 * 4 2 1 34 34 H 1.09000 * 109.47311 * 300.00378 * 4 2 1 35 35 H 1.09000 * 109.47484 * 179.97438 * 5 4 2 36 36 H 1.09003 * 109.46933 * 60.00326 * 5 4 2 37 37 H 0.97005 * 120.00273 * 0.02562 * 10 8 6 38 38 H 1.08998 * 109.46794 * 59.99836 * 11 10 8 39 39 H 1.08995 * 109.46704 * 299.99897 * 11 10 8 40 40 H 1.07997 * 120.00388 * 307.00639 * 12 11 10 41 41 H 1.08005 * 119.99600 * 187.55742 * 13 12 11 42 42 H 1.09001 * 109.47398 * 7.15550 * 14 13 12 43 43 H 1.08997 * 109.47445 * 247.15729 * 14 13 12 44 44 H 1.00898 * 110.99921 * 303.95786 * 15 14 13 45 45 H 1.09007 * 109.47294 * 299.99604 * 16 15 14 46 46 H 1.08992 * 109.47572 * 60.00051 * 16 15 14 47 47 H 0.97003 * 120.00113 * 359.97438 * 19 17 16 48 48 H 0.97001 * 119.99487 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.46841 * 60.00135 * 28 6 5 50 50 H 1.09000 * 109.47311 * 180.02562 * 28 6 5 51 51 H 1.09003 * 109.46933 * 299.99674 * 29 28 6 52 52 H 1.09000 * 109.47484 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0806 -1.4415 0.0005 7 1 3.7176 -2.4693 0.0002 8 6 5.5875 -1.4404 0.0005 9 8 6.1936 -0.9144 0.9099 10 7 6.2619 -2.0240 -1.0100 11 6 7.7269 -2.0224 -1.0103 12 6 8.2298 -2.7337 -2.2400 13 6 9.0911 -2.1439 -3.0315 14 6 9.7086 -0.8300 -2.6277 15 7 11.1717 -0.9293 -2.7138 16 6 11.8091 0.3360 -2.3259 17 6 13.3062 0.1961 -2.4271 18 8 13.7942 -0.8545 -2.7867 19 7 14.1028 1.2380 -2.1172 20 6 15.4648 1.1106 -2.2089 21 1 15.8992 0.1754 -2.5298 22 6 16.2862 2.1850 -1.8899 23 7 15.7575 3.3231 -1.4999 24 14 18.1418 2.0116 -2.0154 25 1 18.5144 1.6781 -3.4137 26 1 18.7862 3.2905 -1.6226 27 1 18.6002 0.9281 -1.1092 28 6 3.5706 -0.7203 -1.2488 29 6 2.0406 -0.7208 -1.2492 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -1.7488 1.2493 34 1 1.6767 -0.2073 2.1392 35 1 3.9334 -1.2340 2.1399 36 1 3.9330 0.3072 1.2499 37 1 5.7772 -2.4443 -1.7376 38 1 8.0909 -2.5353 -0.1200 39 1 8.0891 -0.9944 -1.0110 40 1 7.8800 -3.7295 -2.4689 41 1 9.3588 -2.5995 -3.9735 42 1 9.4203 -0.5925 -1.6037 43 1 9.3579 -0.0432 -3.2955 44 1 11.5158 -1.6941 -2.1529 45 1 11.4731 1.1312 -2.9914 46 1 11.5354 0.5811 -1.2997 47 1 13.7126 2.0781 -1.8294 48 1 16.3309 4.0730 -1.2768 49 1 3.9335 0.3075 -1.2486 50 1 3.9340 -1.2342 -2.1388 51 1 1.6777 -1.7487 -1.2494 52 1 1.6773 -0.2075 -2.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274519585.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:08 Heat of formation + Delta-G solvation = -82.176291 kcal Electronic energy + Delta-G solvation = -27953.697571 eV Core-core repulsion = 23952.202022 eV Total energy + Delta-G solvation = -4001.495549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -40.55812 -38.54665 -38.27368 -37.01411 -35.04599 -33.90033 -33.37225 -32.60840 -31.20733 -31.15992 -28.31517 -27.34334 -25.85725 -24.69880 -23.14518 -23.10327 -22.50824 -20.61974 -20.16303 -19.43655 -18.83437 -17.87091 -17.25359 -16.92669 -16.19422 -15.80619 -15.44838 -15.21250 -14.81719 -14.72209 -14.68505 -14.53946 -14.33157 -13.99004 -13.74454 -13.58331 -13.47974 -13.27382 -13.12548 -12.78454 -12.61978 -12.52276 -12.23767 -11.94133 -11.76852 -11.61744 -11.56353 -11.45429 -11.39422 -11.12036 -11.05161 -10.92852 -10.79178 -10.47256 -10.42541 -10.19519 -10.03866 -9.55274 -9.48202 -9.13458 -8.44264 -8.04262 -7.93975 -6.39614 -3.80546 1.77453 2.39446 3.06412 3.21901 3.27421 3.31949 3.92800 4.13966 4.15227 4.17798 4.24284 4.39358 4.57386 4.61301 4.63425 4.75174 4.84447 4.91328 4.99068 5.01311 5.03026 5.08904 5.17659 5.19986 5.27073 5.33401 5.36021 5.40233 5.45874 5.56100 5.60055 5.63899 5.64637 5.72557 5.74975 5.79504 5.81271 5.85173 5.90566 5.98964 6.04215 6.12765 6.27575 6.35601 6.52161 7.18593 7.22479 7.56950 7.65098 7.97408 8.07987 8.63242 9.19612 9.56186 10.07673 10.78038 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.001488 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.919368 B =18809.716935 C =19480.175848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.114 4.114 5 C -0.100 4.100 6 C -0.104 4.104 7 H 0.096 0.904 8 C 0.513 3.487 9 O -0.538 6.538 10 N -0.725 5.725 11 C 0.137 3.863 12 C -0.191 4.191 13 C -0.108 4.108 14 C 0.069 3.931 15 N -0.664 5.664 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C -0.111 4.111 29 C -0.112 4.112 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.400 0.600 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.351 0.649 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.064 0.936 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.586 -8.363 1.616 33.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.138 4.138 6 C -0.126 4.126 7 H 0.114 0.886 8 C 0.299 3.701 9 O -0.414 6.414 10 N -0.377 5.377 11 C 0.014 3.986 12 C -0.211 4.211 13 C -0.128 4.128 14 C -0.059 4.059 15 N -0.296 5.296 16 C -0.083 4.083 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.149 4.149 29 C -0.150 4.150 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.234 0.766 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.136 0.864 41 H 0.141 0.859 42 H 0.060 0.940 43 H 0.098 0.902 44 H 0.170 0.830 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.083 0.917 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -31.666 -8.344 1.435 32.778 hybrid contribution 0.413 0.229 0.646 0.800 sum -31.252 -8.116 2.080 32.356 Atomic orbital electron populations 1.21831 0.95206 1.01761 1.01706 1.21186 0.95441 0.99916 0.94908 0.91051 1.21620 0.95099 1.00722 0.97705 1.21350 0.94805 1.01446 0.96212 1.21358 0.91109 1.02045 0.98068 0.88620 1.20743 0.90081 0.77689 0.81547 1.90729 1.70417 1.44473 1.35778 1.46029 1.07174 1.59076 1.25445 1.20538 0.79527 1.01405 0.97095 1.22767 1.01977 0.99789 0.96553 1.22963 0.95370 0.95946 0.98482 1.21266 0.88921 0.95955 0.99793 1.60050 1.02506 1.05765 1.61300 1.21692 0.94595 0.92718 0.99285 1.19782 0.87470 0.85506 0.84632 1.90520 1.75822 1.28528 1.51929 1.41851 1.06620 1.12679 1.58799 1.19663 0.80885 0.99864 1.42625 0.87961 1.25265 1.00756 0.94844 0.97037 1.69609 1.36544 1.02674 1.45453 0.85909 0.81979 0.77349 0.78917 1.19882 1.20979 1.19921 1.21541 0.96271 1.01219 0.95866 1.21584 0.94526 1.00963 0.97880 0.92686 0.92713 0.92732 0.91926 0.91601 0.91181 0.91087 0.76595 0.90999 0.89959 0.86404 0.85880 0.93997 0.90151 0.82983 0.89528 0.93737 0.77430 0.91821 0.91201 0.91412 0.91727 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.20 37.16 0.34 -0.30 16 2 C -0.10 -0.48 2.72 -90.62 -0.25 -0.73 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.11 -0.63 5.20 -26.73 -0.14 -0.76 16 5 C -0.10 -0.74 4.49 -26.74 -0.12 -0.87 16 6 C -0.10 -0.70 2.53 -91.78 -0.23 -0.93 16 7 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 8 C 0.51 5.09 7.15 -10.99 -0.08 5.01 16 9 O -0.54 -7.77 15.98 5.55 0.09 -7.68 16 10 N -0.73 -5.84 5.44 -61.47 -0.33 -6.18 16 11 C 0.14 1.33 5.76 -5.19 -0.03 1.30 16 12 C -0.19 -1.64 9.63 -36.03 -0.35 -1.99 16 13 C -0.11 -1.11 9.77 -36.03 -0.35 -1.46 16 14 C 0.07 0.86 5.77 -4.98 -0.03 0.83 16 15 N -0.66 -10.91 6.11 -116.35 -0.71 -11.62 16 16 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 17 C 0.44 10.64 7.82 -10.99 -0.09 10.55 16 18 O -0.58 -16.13 15.78 5.55 0.09 -16.05 16 19 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 20 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.84 13.05 55.50 0.72 -24.11 16 24 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 C -0.11 -0.60 5.10 -26.73 -0.14 -0.73 16 29 C -0.11 -0.51 5.20 -26.74 -0.14 -0.64 16 30 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.40 2.10 7.88 -40.82 -0.32 1.78 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.93 5.30 -51.93 -0.28 0.65 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 42 H 0.04 0.51 5.30 -51.93 -0.28 0.24 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.35 6.00 8.42 -39.29 -0.33 5.66 16 45 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.07 0.28 7.56 -51.93 -0.39 -0.11 16 51 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 52 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 418.35 15.07 6.30 6.30 Total: -1.00 -33.56 418.35 -9.82 -43.38 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -9.03 Total: 12.29 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.86 Total: 2.00 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.38 Total: -56.52 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.18 Total: -23.73 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.56 -9.82 -43.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274519585.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.792 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds