Wall clock time and date at job start Tue Mar 31 2020 21:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09003 * 109.47004 * 2 1 4 4 C 1.52998 * 109.47096 * 119.99568 * 2 1 3 5 5 C 1.52995 * 109.47341 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47209 * 300.00515 * 5 4 2 7 7 H 1.09003 * 109.47018 * 299.99758 * 6 5 4 8 8 C 1.50698 * 109.47492 * 179.97438 * 6 5 4 9 9 O 1.21283 * 119.99914 * 359.97438 * 8 6 5 10 10 N 1.34770 * 120.00404 * 179.97438 * 8 6 5 11 11 C 1.46507 * 120.00270 * 179.97438 * 10 8 6 12 12 C 1.50697 * 109.47113 * 179.97438 * 11 10 8 13 13 C 1.31001 * 119.99601 * 127.00198 * 12 11 10 14 14 C 1.50693 * 120.00265 * 7.56479 * 13 12 11 15 15 N 1.46900 * 109.47562 * 127.15626 * 14 13 12 16 16 C 1.46896 * 111.00315 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47310 * 180.02562 * 16 15 14 18 18 O 1.21294 * 120.00005 * 359.97438 * 17 16 15 19 19 N 1.34770 * 120.00239 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00254 * 179.97438 * 19 17 16 21 21 H 1.07994 * 119.99693 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00252 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99594 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00003 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47285 * 60.00561 * 24 22 20 26 26 H 1.48500 * 109.47085 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47123 * 300.00199 * 24 22 20 28 28 C 1.52998 * 109.47389 * 59.99514 * 6 5 4 29 29 C 1.52995 * 109.47341 * 300.00405 * 28 6 5 30 30 H 1.09000 * 109.47349 * 300.00078 * 1 2 3 31 31 H 1.08998 * 109.46809 * 60.00205 * 1 2 3 32 32 H 1.09003 * 109.47004 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46841 * 60.00332 * 4 2 1 34 34 H 1.09000 * 109.47311 * 300.00378 * 4 2 1 35 35 H 1.09000 * 109.47484 * 179.97438 * 5 4 2 36 36 H 1.09003 * 109.46933 * 60.00326 * 5 4 2 37 37 H 0.97005 * 120.00273 * 0.02562 * 10 8 6 38 38 H 1.08998 * 109.46794 * 59.99836 * 11 10 8 39 39 H 1.08995 * 109.46704 * 299.99897 * 11 10 8 40 40 H 1.07997 * 120.00388 * 307.00639 * 12 11 10 41 41 H 1.08005 * 119.99600 * 187.55742 * 13 12 11 42 42 H 1.09001 * 109.47398 * 7.15550 * 14 13 12 43 43 H 1.08997 * 109.47445 * 247.15729 * 14 13 12 44 44 H 1.00898 * 110.99921 * 303.95786 * 15 14 13 45 45 H 1.09007 * 109.47294 * 299.99604 * 16 15 14 46 46 H 1.08992 * 109.47572 * 60.00051 * 16 15 14 47 47 H 0.97003 * 120.00113 * 359.97438 * 19 17 16 48 48 H 0.97001 * 119.99487 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.46841 * 60.00135 * 28 6 5 50 50 H 1.09000 * 109.47311 * 180.02562 * 28 6 5 51 51 H 1.09003 * 109.46933 * 299.99674 * 29 28 6 52 52 H 1.09000 * 109.47484 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5700 -0.7206 1.2497 6 6 4.0806 -1.4415 0.0005 7 1 3.7176 -2.4693 0.0002 8 6 5.5875 -1.4404 0.0005 9 8 6.1936 -0.9144 0.9099 10 7 6.2619 -2.0240 -1.0100 11 6 7.7269 -2.0224 -1.0103 12 6 8.2298 -2.7337 -2.2400 13 6 9.0911 -2.1439 -3.0315 14 6 9.7086 -0.8300 -2.6277 15 7 11.1717 -0.9293 -2.7138 16 6 11.8091 0.3360 -2.3259 17 6 13.3062 0.1961 -2.4271 18 8 13.7942 -0.8545 -2.7867 19 7 14.1028 1.2380 -2.1172 20 6 15.4648 1.1106 -2.2089 21 1 15.8992 0.1754 -2.5298 22 6 16.2862 2.1850 -1.8899 23 7 15.7575 3.3231 -1.4999 24 14 18.1418 2.0116 -2.0154 25 1 18.5144 1.6781 -3.4137 26 1 18.7862 3.2905 -1.6226 27 1 18.6002 0.9281 -1.1092 28 6 3.5706 -0.7203 -1.2488 29 6 2.0406 -0.7208 -1.2492 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6767 -1.7488 1.2493 34 1 1.6767 -0.2073 2.1392 35 1 3.9334 -1.2340 2.1399 36 1 3.9330 0.3072 1.2499 37 1 5.7772 -2.4443 -1.7376 38 1 8.0909 -2.5353 -0.1200 39 1 8.0891 -0.9944 -1.0110 40 1 7.8800 -3.7295 -2.4689 41 1 9.3588 -2.5995 -3.9735 42 1 9.4203 -0.5925 -1.6037 43 1 9.3579 -0.0432 -3.2955 44 1 11.5158 -1.6941 -2.1529 45 1 11.4731 1.1312 -2.9914 46 1 11.5354 0.5811 -1.2997 47 1 13.7126 2.0781 -1.8294 48 1 16.3309 4.0730 -1.2768 49 1 3.9335 0.3075 -1.2486 50 1 3.9340 -1.2342 -2.1388 51 1 1.6777 -1.7487 -1.2494 52 1 1.6773 -0.2075 -2.1394 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274519585.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:06 Heat of formation + Delta-G solvation = -105.985484 kcal Electronic energy + Delta-G solvation = -27954.730015 eV Core-core repulsion = 23952.202022 eV Total energy + Delta-G solvation = -4002.527993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.27139 -40.19719 -39.06540 -38.04985 -36.27043 -35.76026 -34.15832 -33.41638 -33.20723 -31.65294 -29.42351 -28.21942 -26.94698 -26.11222 -24.49743 -23.54824 -23.09913 -21.28849 -21.17771 -20.65857 -20.01394 -19.65937 -18.24231 -17.80657 -17.43094 -16.89082 -16.71884 -16.43308 -16.09340 -15.81009 -15.64703 -15.23474 -15.14523 -15.09107 -14.86574 -14.84923 -14.56108 -14.13177 -13.91739 -13.75678 -13.49267 -13.38592 -13.18769 -13.09039 -13.06772 -12.88223 -12.69362 -12.44337 -12.36684 -12.12668 -12.00747 -11.90003 -11.86111 -11.59732 -11.51523 -11.25721 -10.91685 -10.79769 -10.38842 -10.34090 -10.03705 -9.93925 -9.33937 -8.47715 -5.97103 0.99707 1.39488 1.41303 1.52686 1.61854 2.02587 2.28401 2.35573 2.98299 3.19157 3.52489 3.62393 3.70988 3.76750 3.78947 4.04602 4.13263 4.16114 4.17975 4.26216 4.28666 4.41503 4.44503 4.50085 4.51793 4.52773 4.58553 4.64042 4.69048 4.75255 4.84664 4.95078 5.00129 5.01030 5.06138 5.14390 5.20738 5.26815 5.32893 5.36809 5.39371 5.43597 5.46771 5.56713 5.62077 5.71139 5.85563 6.06147 6.35829 6.55652 6.57937 7.10444 7.25342 7.53588 8.08572 8.69428 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.001488 C = 0.001437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.919368 B =18809.716935 C =19480.175848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.058 0.942 4 C -0.108 4.108 5 C -0.100 4.100 6 C -0.096 4.096 7 H 0.121 0.879 8 C 0.509 3.491 9 O -0.590 6.590 10 N -0.710 5.710 11 C 0.136 3.864 12 C -0.163 4.163 13 C -0.124 4.124 14 C 0.072 3.928 15 N -0.676 5.676 16 C 0.063 3.937 17 C 0.437 3.563 18 O -0.622 6.622 19 N -0.572 5.572 20 C -0.338 4.338 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.995 3.005 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.272 1.272 28 C -0.107 4.107 29 C -0.108 4.108 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.146 0.854 41 H 0.128 0.872 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.345 0.655 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.052 0.948 50 H 0.086 0.914 51 H 0.078 0.922 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.364 -9.287 0.718 35.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.077 0.923 4 C -0.145 4.145 5 C -0.138 4.138 6 C -0.117 4.117 7 H 0.139 0.861 8 C 0.296 3.704 9 O -0.471 6.471 10 N -0.363 5.363 11 C 0.012 3.988 12 C -0.182 4.182 13 C -0.143 4.143 14 C -0.056 4.056 15 N -0.308 5.308 16 C -0.069 4.069 17 C 0.224 3.776 18 O -0.509 6.509 19 N -0.209 5.209 20 C -0.467 4.467 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.145 4.145 29 C -0.145 4.145 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.255 0.745 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.163 0.837 41 H 0.146 0.854 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.163 0.837 45 H 0.123 0.877 46 H 0.080 0.920 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.104 0.896 51 H 0.097 0.903 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -33.495 -9.268 0.503 34.757 hybrid contribution 0.901 0.500 0.959 1.408 sum -32.594 -8.768 1.462 33.785 Atomic orbital electron populations 1.21805 0.94398 1.02253 1.01793 1.21187 0.96075 0.99272 0.95040 0.92342 1.21580 0.93352 1.01563 0.98043 1.21314 0.96316 0.99965 0.96211 1.21372 0.88561 1.03508 0.98280 0.86093 1.21375 0.91431 0.76661 0.80886 1.90708 1.71650 1.46831 1.37878 1.45890 1.06544 1.58333 1.25498 1.20434 0.80549 1.00495 0.97294 1.22839 1.00472 1.00191 0.94705 1.22836 0.96650 0.95428 0.99417 1.21306 0.86366 0.97717 1.00228 1.60067 1.04857 1.04603 1.61269 1.21551 0.90114 0.94323 1.00924 1.20821 0.89875 0.84283 0.82587 1.90484 1.77306 1.29894 1.53224 1.41927 1.06230 1.13355 1.59399 1.19666 0.82477 0.99757 1.44812 0.90201 1.26074 1.05034 0.94181 0.95941 1.69675 1.38159 1.03086 1.45162 0.84961 0.76480 0.77834 0.78889 1.19599 1.19436 1.19673 1.21540 0.97066 1.00227 0.95694 1.21573 0.93535 1.01767 0.97661 0.92916 0.92387 0.91992 0.90626 0.91801 0.92710 0.93421 0.74540 0.92183 0.91633 0.83665 0.85393 0.93743 0.89610 0.83689 0.87651 0.91951 0.76992 0.91257 0.92931 0.89563 0.90301 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.20 71.98 0.66 -0.34 16 2 C -0.10 -0.85 2.72 -10.79 -0.03 -0.88 16 3 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 4 C -0.11 -1.08 5.20 30.59 0.16 -0.92 16 5 C -0.10 -1.50 4.49 30.59 0.14 -1.36 16 6 C -0.10 -1.15 2.53 -11.54 -0.03 -1.18 16 7 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 8 C 0.51 9.83 7.15 87.66 0.63 10.46 16 9 O -0.59 -17.66 15.98 -3.04 -0.05 -17.71 16 10 N -0.71 -10.26 5.44 -466.79 -2.54 -12.80 16 11 C 0.14 2.49 5.76 85.63 0.49 2.98 16 12 C -0.16 -2.40 9.63 25.64 0.25 -2.15 16 13 C -0.12 -2.31 9.77 25.64 0.25 -2.06 16 14 C 0.07 1.69 5.77 85.55 0.49 2.19 16 15 N -0.68 -21.87 6.11 -522.01 -3.19 -25.07 16 16 C 0.06 2.26 6.17 85.56 0.53 2.79 16 17 C 0.44 21.43 7.82 87.66 0.69 22.12 16 18 O -0.62 -35.28 15.78 -3.07 -0.05 -35.33 16 19 N -0.57 -30.17 5.29 -306.99 -1.62 -31.79 16 20 C -0.34 -19.57 9.68 84.04 0.81 -18.76 16 21 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 24 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 C -0.11 -0.95 5.10 30.59 0.16 -0.79 16 29 C -0.11 -0.71 5.20 30.59 0.16 -0.55 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 36 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 37 H 0.42 3.11 7.88 -92.70 -0.73 2.38 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.46 5.30 -2.39 -0.01 1.44 16 40 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 42 H 0.04 1.05 5.30 -2.39 -0.01 1.04 16 43 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.34 11.79 8.42 -89.70 -0.76 11.03 16 45 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 46 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 47 H 0.40 19.88 7.90 -92.71 -0.73 19.15 16 48 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 49 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.09 0.45 7.56 -2.39 -0.02 0.43 16 51 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 52 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -74.71 418.35 -0.61 -75.32 By element: Atomic # 1 Polarization: 42.04 SS G_CDS: -1.29 Total: 40.75 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.82 Total: 11.32 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -7.07 Total: -119.88 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -0.10 Total: -53.04 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -74.71 -0.61 -75.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274519585.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.664 kcal (2) G-P(sol) polarization free energy of solvation -74.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds