Wall clock time and date at job start Tue Mar 31 2020 21:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.49560 * 2 1 4 4 C 1.53033 * 109.50144 * 120.06692 * 2 1 3 5 5 C 1.53043 * 109.53943 * 181.31530 * 4 2 1 6 6 C 1.53184 * 109.31206 * 298.63231 * 5 4 2 7 7 N 1.46933 * 108.77535 * 54.63578 * 6 5 4 8 8 C 1.34779 * 120.63071 * 126.36620 * 7 6 5 9 9 O 1.21346 * 119.99929 * 352.31763 * 8 7 6 10 10 C 1.49441 * 119.99846 * 172.03948 * 8 7 6 11 11 O 1.21349 * 120.00568 * 353.63150 * 10 8 7 12 12 N 1.34784 * 120.00178 * 173.62567 * 10 8 7 13 13 C 1.47425 * 125.64361 * 3.65023 * 12 10 8 14 14 C 1.54910 * 104.83225 * 204.08867 * 13 12 10 15 15 C 1.55159 * 101.58387 * 322.99720 * 14 13 12 16 16 C 1.47015 * 125.64880 * 183.34661 * 12 10 8 17 17 H 1.09000 * 109.88665 * 59.55954 * 16 12 10 18 18 C 1.53002 * 109.88382 * 298.39166 * 16 12 10 19 19 N 1.46498 * 109.47484 * 182.54986 * 18 16 12 20 20 C 1.46503 * 119.99694 * 275.41031 * 19 18 16 21 21 C 1.36938 * 120.00103 * 95.40708 * 19 18 16 22 22 H 1.07999 * 119.99943 * 2.86340 * 21 19 18 23 23 C 1.38805 * 119.99812 * 182.86070 * 21 19 18 24 24 N 1.31617 * 120.00180 * 5.32481 * 23 21 19 25 25 Si 1.86798 * 120.00149 * 185.32231 * 23 21 19 26 26 H 1.48502 * 109.47097 * 60.00047 * 25 23 21 27 27 H 1.48496 * 109.47441 * 180.02562 * 25 23 21 28 28 H 1.48510 * 109.47106 * 300.00324 * 25 23 21 29 29 C 1.46921 * 118.73896 * 306.64185 * 7 6 5 30 30 H 1.09004 * 109.46614 * 299.93274 * 1 2 3 31 31 H 1.09000 * 109.47711 * 59.93406 * 1 2 3 32 32 H 1.08999 * 109.46849 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46470 * 61.29324 * 4 2 1 34 34 H 1.09005 * 109.44918 * 301.32567 * 4 2 1 35 35 H 1.08999 * 109.49721 * 178.68055 * 5 4 2 36 36 H 1.08996 * 109.52294 * 58.60360 * 5 4 2 37 37 H 1.08991 * 109.59063 * 294.84732 * 6 5 4 38 38 H 1.08997 * 109.58618 * 174.41863 * 6 5 4 39 39 H 1.08993 * 110.36868 * 322.93438 * 13 12 10 40 40 H 1.09004 * 110.36760 * 85.14425 * 13 12 10 41 41 H 1.09004 * 110.99868 * 81.06782 * 14 13 12 42 42 H 1.09000 * 111.00620 * 204.91666 * 14 13 12 43 43 H 1.08992 * 110.72447 * 153.86180 * 15 14 13 44 44 H 1.09006 * 110.71711 * 276.95923 * 15 14 13 45 45 H 1.09002 * 109.47236 * 302.55134 * 18 16 12 46 46 H 1.09003 * 109.46882 * 62.54752 * 18 16 12 47 47 H 1.08999 * 109.47168 * 359.33783 * 20 19 18 48 48 H 1.08994 * 109.46747 * 119.33361 * 20 19 18 49 49 H 1.08999 * 109.47117 * 239.33472 * 20 19 18 50 50 H 0.97010 * 120.00268 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.59090 * 173.14370 * 29 7 6 52 52 H 1.08999 * 109.58492 * 293.56982 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7227 1.2484 5 6 3.5709 -0.6946 1.2660 6 6 4.1053 -1.4267 0.0310 7 7 3.5045 -0.8294 -1.1695 8 6 4.2810 -0.3861 -2.1780 9 8 5.4865 -0.3489 -2.0443 10 6 3.6578 0.0537 -3.4631 11 8 2.4669 -0.0955 -3.6423 12 7 4.4184 0.6164 -4.4231 13 6 5.8816 0.7879 -4.3695 14 6 6.1777 1.9693 -5.3267 15 6 5.1467 1.7190 -6.4588 16 6 3.9270 1.1549 -5.6997 17 1 3.2075 1.9522 -5.5134 18 6 3.2722 0.0397 -6.5174 19 7 2.8404 0.5723 -7.8120 20 6 1.5431 1.2422 -7.9326 21 6 3.6494 0.4441 -8.9094 22 1 4.5848 -0.0900 -8.8312 23 6 3.2673 1.0006 -10.1222 24 7 2.1806 1.7398 -10.1938 25 14 4.2951 0.7004 -11.6528 26 1 4.3559 -0.7572 -11.9302 27 1 3.6779 1.3994 -12.8085 28 1 5.6691 1.2208 -11.4364 29 6 2.0415 -0.7190 -1.2471 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6968 -1.7569 1.2358 34 1 1.6583 -0.2236 2.1388 35 1 3.9335 -1.1891 2.1672 36 1 3.9164 0.3390 1.2541 37 1 3.8376 -2.4817 0.0873 38 1 5.1895 -1.3245 -0.0136 39 1 6.1980 1.0326 -3.3556 40 1 6.3826 -0.1167 -4.7144 41 1 5.9945 2.9252 -4.8357 42 1 7.1975 1.9170 -5.7082 43 1 4.8928 2.6517 -6.9624 44 1 5.5274 0.9883 -7.1724 45 1 3.9910 -0.7641 -6.6767 46 1 2.4081 -0.3473 -5.9773 47 1 1.0406 1.2378 -6.9654 48 1 1.6945 2.2712 -8.2587 49 1 0.9290 0.7161 -8.6635 50 1 1.9137 2.1291 -11.0413 51 1 1.7645 -0.1502 -2.1346 52 1 1.6021 -1.7152 -1.2971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275150261.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:27 Heat of formation + Delta-G solvation = -22.754869 kcal Electronic energy + Delta-G solvation = -31214.028605 eV Core-core repulsion = 27215.109762 eV Total energy + Delta-G solvation = -3998.918843 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.01504 -39.31587 -37.83149 -37.41001 -35.30734 -33.76486 -32.33136 -31.58644 -31.27788 -28.96848 -27.06943 -26.49758 -25.91681 -25.12909 -24.19173 -22.72296 -21.46282 -21.22654 -20.55046 -19.72184 -18.82563 -17.14333 -16.99068 -16.82642 -16.32329 -15.76854 -15.27242 -15.02568 -14.80279 -14.60173 -14.38619 -13.95874 -13.71959 -13.58762 -13.50571 -13.11987 -12.98238 -12.81048 -12.76857 -12.63947 -12.35480 -12.12563 -11.98637 -11.80115 -11.45651 -11.30612 -11.09626 -11.04985 -10.94275 -10.89570 -10.79738 -10.74012 -10.41815 -10.38785 -10.20754 -10.13521 -9.79467 -9.67662 -9.00597 -8.84976 -8.63015 -8.39269 -6.86830 -5.59032 -3.03646 1.51579 2.31644 3.26644 3.39903 3.43480 3.46287 3.47326 4.20661 4.45303 4.52491 4.56760 4.62313 4.74821 4.89052 5.00791 5.16618 5.21755 5.25616 5.29166 5.37904 5.44172 5.47297 5.48164 5.61803 5.64445 5.66555 5.68653 5.78964 5.79579 5.82695 5.90403 5.95924 6.01704 6.04513 6.13670 6.14971 6.22990 6.34271 6.43367 6.57006 6.68156 6.84363 6.89832 6.93771 7.03655 7.51886 7.66919 7.75428 7.76617 7.98680 8.13587 8.41612 9.30222 9.93122 10.36906 11.38479 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019158 B = 0.002902 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.202842 B = 9645.620789 C =10615.942422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.071 0.929 4 C -0.117 4.117 5 C -0.133 4.133 6 C 0.107 3.893 7 N -0.584 5.584 8 C 0.512 3.488 9 O -0.523 6.523 10 C 0.515 3.485 11 O -0.514 6.514 12 N -0.575 5.575 13 C 0.097 3.903 14 C -0.141 4.141 15 C -0.106 4.106 16 C 0.110 3.890 17 H 0.072 0.928 18 C 0.149 3.851 19 N -0.604 5.604 20 C 0.168 3.832 21 C -0.241 4.241 22 H 0.073 0.927 23 C -0.006 4.006 24 N -0.917 5.917 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.071 3.929 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.046 0.954 46 H 0.051 0.949 47 H -0.007 1.007 48 H 0.054 0.946 49 H 0.031 0.969 50 H 0.249 0.751 51 H 0.146 0.854 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.515 -2.797 22.666 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.127 4.127 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.172 4.172 6 C -0.015 4.015 7 N -0.318 5.318 8 C 0.296 3.704 9 O -0.399 6.399 10 C 0.298 3.702 11 O -0.393 6.393 12 N -0.307 5.307 13 C -0.025 4.025 14 C -0.179 4.179 15 C -0.144 4.144 16 C 0.006 3.994 17 H 0.090 0.910 18 C 0.020 3.980 19 N -0.327 5.327 20 C 0.024 3.976 21 C -0.371 4.371 22 H 0.091 0.909 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.050 4.050 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.011 0.989 48 H 0.072 0.928 49 H 0.050 0.950 50 H 0.060 0.940 51 H 0.163 0.837 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.401 -2.811 22.491 22.793 hybrid contribution 0.546 -0.161 -0.736 0.930 sum 2.948 -2.972 21.755 22.154 Atomic orbital electron populations 1.21737 0.94123 1.02123 1.02166 1.21456 0.96268 1.00029 0.94943 0.91043 1.21629 0.95017 1.00929 0.97851 1.21903 0.96289 1.01474 0.97486 1.21708 0.99732 0.96603 0.83447 1.47928 1.08016 1.58824 1.17013 1.20233 0.86764 0.78485 0.84964 1.90680 1.14107 1.53303 1.81809 1.19611 0.86384 0.79849 0.84366 1.90474 1.14511 1.55570 1.78728 1.48648 1.08966 1.55723 1.17404 1.22628 0.79647 0.98729 1.01499 1.22912 1.00308 0.97647 0.97068 1.22532 0.93027 1.02625 0.96184 1.22969 0.96916 0.98717 0.80808 0.91035 1.21048 0.97425 0.92991 0.86569 1.44012 1.18134 1.67134 1.03427 1.21067 0.84673 0.98282 0.93608 1.19249 1.01230 1.28924 0.87647 0.90937 1.24836 0.97854 0.99534 0.97940 1.70203 1.25100 1.36995 1.24238 0.86291 0.79340 0.77649 0.82991 1.21293 1.21695 1.21154 1.22925 0.77560 1.02742 1.01812 0.92520 0.91948 0.92472 0.91709 0.91746 0.90634 0.91473 0.91131 0.88846 0.88940 0.91105 0.91263 0.90110 0.89961 0.89637 0.93571 0.93028 0.98861 0.92780 0.95017 0.93968 0.83740 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.20 37.16 0.34 -0.80 16 2 C -0.11 -0.97 2.86 -90.72 -0.26 -1.23 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.12 -0.86 5.17 -26.69 -0.14 -1.00 16 5 C -0.13 -1.01 6.08 -26.61 -0.16 -1.18 16 6 C 0.11 1.02 6.45 -3.71 -0.02 0.99 16 7 N -0.58 -7.09 2.98 -173.55 -0.52 -7.61 16 8 C 0.51 7.51 7.69 -11.59 -0.09 7.42 16 9 O -0.52 -8.15 13.23 5.50 0.07 -8.08 16 10 C 0.51 8.45 7.59 -11.59 -0.09 8.36 16 11 O -0.51 -9.14 12.10 5.50 0.07 -9.07 16 12 N -0.57 -9.46 3.06 -163.51 -0.50 -9.96 16 13 C 0.10 1.38 6.09 -2.53 -0.02 1.37 16 14 C -0.14 -1.90 7.09 -24.58 -0.17 -2.07 16 15 C -0.11 -1.82 5.67 -24.89 -0.14 -1.96 16 16 C 0.11 2.05 3.18 -66.95 -0.21 1.83 16 17 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 18 C 0.15 3.18 5.04 -4.04 -0.02 3.16 16 19 N -0.60 -15.12 2.73 -181.12 -0.49 -15.62 16 20 C 0.17 4.28 9.00 59.85 0.54 4.81 16 21 C -0.24 -6.42 8.49 -15.06 -0.13 -6.55 16 22 H 0.07 1.86 7.31 -52.49 -0.38 1.48 16 23 C -0.01 -0.15 5.44 -17.43 -0.09 -0.25 16 24 N -0.92 -26.36 9.48 55.49 0.53 -25.84 16 25 Si 0.91 21.71 29.56 -169.99 -5.02 16.69 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 C 0.07 0.80 5.25 -3.93 -0.02 0.78 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.96 7.00 -51.93 -0.36 0.59 16 39 H 0.09 1.29 6.13 -51.93 -0.32 0.97 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 44 H 0.09 1.61 6.61 -51.93 -0.34 1.26 16 45 H 0.05 0.99 7.96 -51.93 -0.41 0.58 16 46 H 0.05 1.14 6.70 -51.93 -0.35 0.80 16 47 H -0.01 -0.17 7.86 -51.93 -0.41 -0.58 16 48 H 0.05 1.47 6.72 -51.93 -0.35 1.13 16 49 H 0.03 0.87 7.35 -51.93 -0.38 0.49 16 50 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.15 1.99 4.28 -54.99 -0.24 1.75 16 52 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -29.76 393.12 -9.66 -39.42 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -9.02 Total: 0.45 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: -0.69 Total: 13.70 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.99 Total: -59.02 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.14 Total: -17.16 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.76 -9.66 -39.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275150261.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.663 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds