Wall clock time and date at job start Tue Mar 31 2020 21:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.49560 * 2 1 4 4 C 1.53033 * 109.50144 * 120.06692 * 2 1 3 5 5 C 1.53043 * 109.53943 * 181.31530 * 4 2 1 6 6 C 1.53184 * 109.31206 * 298.63231 * 5 4 2 7 7 N 1.46933 * 108.77535 * 54.63578 * 6 5 4 8 8 C 1.34779 * 120.63071 * 126.36620 * 7 6 5 9 9 O 1.21346 * 119.99929 * 352.31763 * 8 7 6 10 10 C 1.49441 * 119.99846 * 172.03948 * 8 7 6 11 11 O 1.21349 * 120.00568 * 353.63150 * 10 8 7 12 12 N 1.34784 * 120.00178 * 173.62567 * 10 8 7 13 13 C 1.47425 * 125.64361 * 3.65023 * 12 10 8 14 14 C 1.54910 * 104.83225 * 204.08867 * 13 12 10 15 15 C 1.55159 * 101.58387 * 322.99720 * 14 13 12 16 16 C 1.47015 * 125.64880 * 183.34661 * 12 10 8 17 17 H 1.09000 * 109.88665 * 59.55954 * 16 12 10 18 18 C 1.53002 * 109.88382 * 298.39166 * 16 12 10 19 19 N 1.46498 * 109.47484 * 182.54986 * 18 16 12 20 20 C 1.46503 * 119.99694 * 275.41031 * 19 18 16 21 21 C 1.36938 * 120.00103 * 95.40708 * 19 18 16 22 22 H 1.07999 * 119.99943 * 2.86340 * 21 19 18 23 23 C 1.38805 * 119.99812 * 182.86070 * 21 19 18 24 24 N 1.31617 * 120.00180 * 5.32481 * 23 21 19 25 25 Si 1.86798 * 120.00149 * 185.32231 * 23 21 19 26 26 H 1.48502 * 109.47097 * 60.00047 * 25 23 21 27 27 H 1.48496 * 109.47441 * 180.02562 * 25 23 21 28 28 H 1.48510 * 109.47106 * 300.00324 * 25 23 21 29 29 C 1.46921 * 118.73896 * 306.64185 * 7 6 5 30 30 H 1.09004 * 109.46614 * 299.93274 * 1 2 3 31 31 H 1.09000 * 109.47711 * 59.93406 * 1 2 3 32 32 H 1.08999 * 109.46849 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46470 * 61.29324 * 4 2 1 34 34 H 1.09005 * 109.44918 * 301.32567 * 4 2 1 35 35 H 1.08999 * 109.49721 * 178.68055 * 5 4 2 36 36 H 1.08996 * 109.52294 * 58.60360 * 5 4 2 37 37 H 1.08991 * 109.59063 * 294.84732 * 6 5 4 38 38 H 1.08997 * 109.58618 * 174.41863 * 6 5 4 39 39 H 1.08993 * 110.36868 * 322.93438 * 13 12 10 40 40 H 1.09004 * 110.36760 * 85.14425 * 13 12 10 41 41 H 1.09004 * 110.99868 * 81.06782 * 14 13 12 42 42 H 1.09000 * 111.00620 * 204.91666 * 14 13 12 43 43 H 1.08992 * 110.72447 * 153.86180 * 15 14 13 44 44 H 1.09006 * 110.71711 * 276.95923 * 15 14 13 45 45 H 1.09002 * 109.47236 * 302.55134 * 18 16 12 46 46 H 1.09003 * 109.46882 * 62.54752 * 18 16 12 47 47 H 1.08999 * 109.47168 * 359.33783 * 20 19 18 48 48 H 1.08994 * 109.46747 * 119.33361 * 20 19 18 49 49 H 1.08999 * 109.47117 * 239.33472 * 20 19 18 50 50 H 0.97010 * 120.00268 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.59090 * 173.14370 * 29 7 6 52 52 H 1.08999 * 109.58492 * 293.56982 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7227 1.2484 5 6 3.5709 -0.6946 1.2660 6 6 4.1053 -1.4267 0.0310 7 7 3.5045 -0.8294 -1.1695 8 6 4.2810 -0.3861 -2.1780 9 8 5.4865 -0.3489 -2.0443 10 6 3.6578 0.0537 -3.4631 11 8 2.4669 -0.0955 -3.6423 12 7 4.4184 0.6164 -4.4231 13 6 5.8816 0.7879 -4.3695 14 6 6.1777 1.9693 -5.3267 15 6 5.1467 1.7190 -6.4588 16 6 3.9270 1.1549 -5.6997 17 1 3.2075 1.9522 -5.5134 18 6 3.2722 0.0397 -6.5174 19 7 2.8404 0.5723 -7.8120 20 6 1.5431 1.2422 -7.9326 21 6 3.6494 0.4441 -8.9094 22 1 4.5848 -0.0900 -8.8312 23 6 3.2673 1.0006 -10.1222 24 7 2.1806 1.7398 -10.1938 25 14 4.2951 0.7004 -11.6528 26 1 4.3559 -0.7572 -11.9302 27 1 3.6779 1.3994 -12.8085 28 1 5.6691 1.2208 -11.4364 29 6 2.0415 -0.7190 -1.2471 30 1 -0.3633 0.5128 0.8906 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6968 -1.7569 1.2358 34 1 1.6583 -0.2236 2.1388 35 1 3.9335 -1.1891 2.1672 36 1 3.9164 0.3390 1.2541 37 1 3.8376 -2.4817 0.0873 38 1 5.1895 -1.3245 -0.0136 39 1 6.1980 1.0326 -3.3556 40 1 6.3826 -0.1167 -4.7144 41 1 5.9945 2.9252 -4.8357 42 1 7.1975 1.9170 -5.7082 43 1 4.8928 2.6517 -6.9624 44 1 5.5274 0.9883 -7.1724 45 1 3.9910 -0.7641 -6.6767 46 1 2.4081 -0.3473 -5.9773 47 1 1.0406 1.2378 -6.9654 48 1 1.6945 2.2712 -8.2587 49 1 0.9290 0.7161 -8.6635 50 1 1.9137 2.1291 -11.0413 51 1 1.7645 -0.1502 -2.1346 52 1 1.6021 -1.7152 -1.2971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275150261.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:26 Heat of formation + Delta-G solvation = -39.028875 kcal Electronic energy + Delta-G solvation = -31214.734299 eV Core-core repulsion = 27215.109762 eV Total energy + Delta-G solvation = -3999.624537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.18671 -40.48792 -38.90600 -38.70097 -37.17061 -34.64211 -33.48521 -33.08751 -32.60348 -30.63242 -28.05311 -27.80082 -27.51869 -26.72944 -25.32837 -23.76468 -22.97206 -22.47211 -21.60444 -20.86757 -20.05102 -18.93581 -18.19783 -18.11727 -17.66744 -16.93984 -16.78002 -16.28324 -15.84288 -15.71148 -15.42724 -15.28537 -15.15473 -15.04618 -14.60719 -14.42569 -14.25453 -14.13314 -13.95293 -13.75437 -13.56318 -13.49446 -13.13626 -12.90391 -12.77189 -12.68074 -12.63016 -12.44046 -12.27009 -12.08213 -12.06910 -11.98082 -11.88520 -11.69771 -11.56575 -11.55365 -11.45869 -11.34205 -10.64767 -10.18894 -9.93082 -9.74208 -8.90334 -7.69110 -5.16039 0.29407 1.17034 1.49430 1.51886 1.57869 2.04381 2.29814 2.54800 3.06375 3.38957 3.58560 3.75108 3.79365 3.84180 3.88043 3.95087 4.03561 4.04646 4.27004 4.30005 4.39821 4.43195 4.48357 4.56272 4.66406 4.73225 4.75350 4.80868 4.84296 4.86964 4.90800 4.93480 5.00078 5.03905 5.06645 5.07854 5.12410 5.14871 5.26155 5.32301 5.33462 5.39952 5.46704 5.49592 5.52498 5.63972 5.84417 5.97902 6.25267 6.31791 6.59399 6.88170 7.18942 7.88856 8.30290 9.27934 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019158 B = 0.002902 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.202842 B = 9645.620789 C =10615.942422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.059 0.941 4 C -0.112 4.112 5 C -0.127 4.127 6 C 0.102 3.898 7 N -0.578 5.578 8 C 0.512 3.488 9 O -0.535 6.535 10 C 0.508 3.492 11 O -0.533 6.533 12 N -0.579 5.579 13 C 0.100 3.900 14 C -0.125 4.125 15 C -0.102 4.102 16 C 0.122 3.878 17 H 0.054 0.946 18 C 0.155 3.845 19 N -0.617 5.617 20 C 0.187 3.813 21 C -0.242 4.242 22 H 0.081 0.919 23 C -0.061 4.061 24 N -0.947 5.947 25 Si 0.970 3.030 26 H -0.283 1.283 27 H -0.298 1.298 28 H -0.272 1.272 29 C 0.070 3.930 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.040 0.960 47 H 0.010 0.990 48 H 0.033 0.967 49 H 0.004 0.996 50 H 0.243 0.757 51 H 0.119 0.881 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 -3.575 24.967 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.078 0.922 4 C -0.150 4.150 5 C -0.165 4.165 6 C -0.019 4.019 7 N -0.310 5.310 8 C 0.295 3.705 9 O -0.413 6.413 10 C 0.292 3.708 11 O -0.413 6.413 12 N -0.312 5.312 13 C -0.022 4.022 14 C -0.162 4.162 15 C -0.140 4.140 16 C 0.017 3.983 17 H 0.072 0.928 18 C 0.028 3.972 19 N -0.340 5.340 20 C 0.043 3.957 21 C -0.371 4.371 22 H 0.099 0.901 23 C -0.254 4.254 24 N -0.597 5.597 25 Si 0.799 3.201 26 H -0.210 1.210 27 H -0.225 1.225 28 H -0.198 1.198 29 C -0.051 4.051 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.125 0.875 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.028 0.972 48 H 0.051 0.949 49 H 0.023 0.977 50 H 0.053 0.947 51 H 0.137 0.863 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.916 -3.614 24.859 25.424 hybrid contribution 0.009 0.011 -1.341 1.341 sum 3.924 -3.603 23.519 24.115 Atomic orbital electron populations 1.21721 0.93292 1.02646 1.02229 1.21413 0.96903 0.99249 0.94712 0.92219 1.21620 0.94751 1.01381 0.97239 1.21888 0.96387 1.00893 0.97367 1.21972 0.99347 0.97651 0.82911 1.48072 1.08288 1.57587 1.17050 1.19853 0.86720 0.79147 0.84792 1.90667 1.14283 1.54381 1.81938 1.20132 0.86251 0.79321 0.85087 1.90498 1.15404 1.56067 1.79341 1.48662 1.10053 1.55850 1.16598 1.22740 0.78014 0.99256 1.02156 1.22889 1.00416 0.97854 0.95078 1.22382 0.93553 1.01197 0.96902 1.22478 0.97206 0.96836 0.81802 0.92750 1.21013 0.97081 0.93745 0.85411 1.44155 1.17954 1.67269 1.04665 1.20709 0.84893 0.96638 0.93485 1.19557 1.01342 1.28135 0.88095 0.90103 1.25600 0.99179 0.99909 1.00717 1.70402 1.26753 1.38235 1.24314 0.85278 0.78290 0.77335 0.79172 1.20952 1.22477 1.19797 1.22867 0.77184 1.02980 1.02091 0.91063 0.93314 0.91707 0.90719 0.90195 0.88064 0.92462 0.89410 0.89523 0.88156 0.90684 0.90094 0.87476 0.91546 0.91096 0.93661 0.94158 0.97186 0.94892 0.97717 0.94697 0.86344 0.90715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.20 71.98 0.66 -1.38 16 2 C -0.10 -1.71 2.86 -10.86 -0.03 -1.74 16 3 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.11 -1.33 5.17 30.62 0.16 -1.17 16 5 C -0.13 -1.57 6.08 30.67 0.19 -1.38 16 6 C 0.10 1.71 6.45 86.36 0.56 2.27 16 7 N -0.58 -13.38 2.98 -821.34 -2.45 -15.82 16 8 C 0.51 14.70 7.69 87.27 0.67 15.37 16 9 O -0.53 -16.06 13.23 -3.24 -0.04 -16.10 16 10 C 0.51 16.75 7.59 87.26 0.66 17.41 16 11 O -0.53 -19.44 12.10 -3.24 -0.04 -19.48 16 12 N -0.58 -18.91 3.06 -789.59 -2.42 -21.33 16 13 C 0.10 2.68 6.09 86.86 0.53 3.21 16 14 C -0.12 -3.10 7.09 31.99 0.23 -2.87 16 15 C -0.10 -3.49 5.67 31.79 0.18 -3.31 16 16 C 0.12 4.57 3.18 45.35 0.14 4.71 16 17 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 18 C 0.16 6.76 5.04 86.38 0.44 7.20 16 19 N -0.62 -31.58 2.73 -726.94 -1.99 -33.56 16 20 C 0.19 9.90 9.00 127.77 1.15 11.05 16 21 C -0.24 -12.99 8.49 84.03 0.71 -12.28 16 22 H 0.08 4.13 7.31 -2.91 -0.02 4.11 16 23 C -0.06 -3.40 5.44 84.86 0.46 -2.94 16 24 N -0.95 -55.92 9.48 21.65 0.21 -55.71 16 25 Si 0.97 44.91 29.56 68.60 2.03 46.94 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 28 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 29 C 0.07 1.53 5.25 86.22 0.45 1.98 16 30 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.75 8.14 -2.38 -0.02 0.74 16 35 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.61 7.00 -2.39 -0.02 1.60 16 39 H 0.10 2.61 6.13 -2.39 -0.01 2.59 16 40 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.07 2.63 6.61 -2.38 -0.02 2.62 16 45 H 0.04 1.96 7.96 -2.39 -0.02 1.94 16 46 H 0.04 1.83 6.70 -2.39 -0.02 1.82 16 47 H 0.01 0.47 7.86 -2.39 -0.02 0.45 16 48 H 0.03 1.87 6.72 -2.39 -0.02 1.85 16 49 H 0.00 0.25 7.35 -2.39 -0.02 0.23 16 50 H 0.24 14.09 8.31 -92.70 -0.77 13.32 16 51 H 0.12 3.33 4.28 -50.87 -0.22 3.11 16 52 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -65.29 393.12 3.14 -62.14 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.69 Total: 16.81 kcal Atomic # 6 Polarization: 28.97 SS G_CDS: 7.16 Total: 36.13 kcal Atomic # 7 Polarization: -119.79 SS G_CDS: -6.65 Total: -126.43 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.08 Total: -35.58 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.29 3.14 -62.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275150261.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.114 kcal (2) G-P(sol) polarization free energy of solvation -65.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds