Wall clock time and date at job start Tue Mar 31 2020 21:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.52492 * 2 1 4 4 C 1.53041 * 109.49955 * 120.07982 * 2 1 3 5 5 C 1.53040 * 109.52562 * 181.30576 * 4 2 1 6 6 C 1.53191 * 109.31628 * 298.64037 * 5 4 2 7 7 N 1.46935 * 108.77159 * 54.63677 * 6 5 4 8 8 C 1.34774 * 120.62769 * 126.41018 * 7 6 5 9 9 O 1.21349 * 119.99510 * 175.96668 * 8 7 6 10 10 C 1.49450 * 120.00260 * 355.97318 * 8 7 6 11 11 O 1.21356 * 120.00003 * 83.91094 * 10 8 7 12 12 N 1.34772 * 119.99977 * 263.91533 * 10 8 7 13 13 C 1.47424 * 125.64896 * 4.18660 * 12 10 8 14 14 C 1.55126 * 104.72291 * 155.81836 * 13 12 10 15 15 C 1.55155 * 101.48518 * 37.29791 * 14 13 12 16 16 C 1.47025 * 125.64885 * 184.50048 * 12 10 8 17 17 H 1.09005 * 109.87929 * 300.43594 * 16 12 10 18 18 C 1.52998 * 109.88469 * 61.60252 * 16 12 10 19 19 N 1.46497 * 109.47291 * 185.66302 * 18 16 12 20 20 C 1.46503 * 119.99878 * 273.22203 * 19 18 16 21 21 C 1.36942 * 120.00155 * 93.22213 * 19 18 16 22 22 H 1.08003 * 119.99962 * 30.28098 * 21 19 18 23 23 C 1.38810 * 120.00229 * 210.28435 * 21 19 18 24 24 N 1.31628 * 119.99590 * 7.03574 * 23 21 19 25 25 Si 1.86791 * 120.00173 * 187.03864 * 23 21 19 26 26 H 1.48500 * 109.47309 * 4.99957 * 25 23 21 27 27 H 1.48502 * 109.47144 * 125.00094 * 25 23 21 28 28 H 1.48497 * 109.47162 * 244.99833 * 25 23 21 29 29 C 1.46920 * 118.73830 * 306.39177 * 7 6 5 30 30 H 1.09003 * 109.46807 * 299.91882 * 1 2 3 31 31 H 1.09001 * 109.47013 * 59.91647 * 1 2 3 32 32 H 1.08994 * 109.47478 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.45461 * 61.29558 * 4 2 1 34 34 H 1.08990 * 109.45988 * 301.32258 * 4 2 1 35 35 H 1.09001 * 109.49833 * 58.59417 * 5 4 2 36 36 H 1.09002 * 109.49538 * 178.68996 * 5 4 2 37 37 H 1.08999 * 109.58980 * 174.42068 * 6 5 4 38 38 H 1.08999 * 109.58994 * 294.85498 * 6 5 4 39 39 H 1.08993 * 110.36883 * 274.75156 * 13 12 10 40 40 H 1.09003 * 110.36293 * 37.06977 * 13 12 10 41 41 H 1.08999 * 111.19367 * 279.19488 * 14 13 12 42 42 H 1.08994 * 110.90779 * 155.27722 * 14 13 12 43 43 H 1.09005 * 110.72209 * 205.96738 * 15 14 13 44 44 H 1.09001 * 110.72236 * 82.69797 * 15 14 13 45 45 H 1.09005 * 109.47009 * 305.66421 * 18 16 12 46 46 H 1.08998 * 109.47149 * 65.65945 * 18 16 12 47 47 H 1.09003 * 109.46668 * 94.54212 * 20 19 18 48 48 H 1.08999 * 109.47218 * 214.53760 * 20 19 18 49 49 H 1.08995 * 109.47138 * 334.53925 * 20 19 18 50 50 H 0.97003 * 119.99415 * 180.02562 * 24 23 21 51 51 H 1.08997 * 109.58490 * 173.39774 * 29 7 6 52 52 H 1.08998 * 109.58844 * 293.67914 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 3.5709 -0.6950 1.2655 6 6 4.1050 -1.4267 0.0302 7 7 3.5040 -0.8290 -1.1700 8 6 4.2803 -0.3862 -2.1789 9 8 3.7707 0.0381 -3.1952 10 6 5.7685 -0.4178 -2.0459 11 8 6.3788 -1.4356 -2.2994 12 7 6.4327 0.6840 -1.6445 13 6 5.8144 1.9540 -1.2225 14 6 6.8738 2.6238 -0.3084 15 6 8.1922 2.2387 -1.0300 16 6 7.8942 0.8207 -1.5610 17 1 8.2976 0.0757 -0.8750 18 6 8.5136 0.6438 -2.9488 19 7 9.9742 0.6466 -2.8357 20 6 10.7086 1.9139 -2.8645 21 6 10.6530 -0.5353 -2.7031 22 1 10.2583 -1.4374 -3.1468 23 6 11.8483 -0.5739 -1.9984 24 7 12.2596 0.4900 -1.3416 25 14 12.8729 -2.1356 -1.9823 26 1 12.2592 -3.1398 -2.8880 27 1 14.2504 -1.8287 -2.4445 28 1 12.9239 -2.6800 -0.6017 29 6 2.0407 -0.7236 -1.2496 30 1 -0.3633 0.5126 0.8908 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6967 -1.7572 1.2352 34 1 1.6585 -0.2243 2.1388 35 1 3.9160 0.3388 1.2536 36 1 3.9337 -1.1897 2.1665 37 1 5.1893 -1.3246 -0.0147 38 1 3.8372 -2.4818 0.0861 39 1 5.6068 2.5813 -2.0893 40 1 4.8983 1.7626 -0.6636 41 1 6.8441 2.2086 0.6989 42 1 6.7414 3.7055 -0.2875 43 1 9.0253 2.2203 -0.3273 44 1 8.3957 2.9238 -1.8531 45 1 8.1840 -0.3035 -3.3757 46 1 8.1975 1.4629 -3.5947 47 1 10.8819 2.2567 -1.8444 48 1 11.6653 1.7682 -3.3662 49 1 10.1252 2.6598 -3.4043 50 1 13.0951 0.4631 -0.8495 51 1 1.7630 -0.1577 -2.1388 52 1 1.6047 -1.7213 -1.3005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275150268.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:42 Heat of formation + Delta-G solvation = -47.268815 kcal Electronic energy + Delta-G solvation = -31467.804889 eV Core-core repulsion = 27467.823041 eV Total energy + Delta-G solvation = -3999.981848 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.94264 -39.35455 -37.90808 -37.12397 -35.24559 -34.12886 -32.19304 -31.66613 -31.30040 -29.14504 -27.53341 -26.36210 -26.04007 -25.11720 -24.03687 -22.65526 -21.99716 -21.05872 -20.53800 -19.94116 -18.58790 -17.65522 -16.87936 -16.63336 -16.46209 -15.69832 -15.24258 -15.07639 -14.78139 -14.59929 -14.36376 -13.99075 -13.79753 -13.61180 -13.44250 -13.29141 -13.03223 -12.98919 -12.95276 -12.70192 -12.40238 -12.21912 -11.98440 -11.86117 -11.48953 -11.39554 -11.28195 -11.18580 -11.03164 -10.97761 -10.81774 -10.75686 -10.70004 -10.51289 -10.30084 -10.08988 -9.94504 -9.70590 -9.29834 -8.97175 -8.57240 -8.42794 -6.62120 -5.69652 -3.21822 2.11312 2.26409 2.72139 3.36143 3.41526 3.48284 3.52973 4.15883 4.33840 4.42859 4.47971 4.54948 4.62926 4.70262 4.89719 5.01439 5.04843 5.10380 5.13120 5.20896 5.32386 5.37271 5.43001 5.45854 5.49475 5.49819 5.61048 5.61955 5.70485 5.72252 5.75179 5.78529 5.79709 5.91990 6.00474 6.09321 6.17405 6.26632 6.31619 6.51996 6.60745 6.76853 6.83685 6.96049 7.04653 7.36066 7.58324 7.74011 7.75094 7.90140 8.10038 8.49705 9.29518 9.89128 10.41682 11.34291 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017584 B = 0.003079 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.974527 B = 9093.098604 C = 9457.064450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.135 4.135 6 C 0.104 3.896 7 N -0.599 5.599 8 C 0.522 3.478 9 O -0.516 6.516 10 C 0.524 3.476 11 O -0.505 6.505 12 N -0.594 5.594 13 C 0.096 3.904 14 C -0.133 4.133 15 C -0.112 4.112 16 C 0.115 3.885 17 H 0.084 0.916 18 C 0.145 3.855 19 N -0.592 5.592 20 C 0.160 3.840 21 C -0.251 4.251 22 H 0.067 0.933 23 C 0.007 3.993 24 N -0.907 5.907 25 Si 0.903 3.097 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.289 1.289 29 C 0.115 3.885 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.035 0.965 47 H 0.035 0.965 48 H 0.037 0.963 49 H -0.003 1.003 50 H 0.251 0.749 51 H 0.094 0.906 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.355 3.566 8.186 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.094 0.906 4 C -0.153 4.153 5 C -0.173 4.173 6 C -0.018 4.018 7 N -0.334 5.334 8 C 0.305 3.695 9 O -0.390 6.390 10 C 0.305 3.695 11 O -0.379 6.379 12 N -0.330 5.330 13 C -0.027 4.027 14 C -0.171 4.171 15 C -0.150 4.150 16 C 0.011 3.989 17 H 0.102 0.898 18 C 0.017 3.983 19 N -0.315 5.315 20 C 0.015 3.985 21 C -0.381 4.381 22 H 0.084 0.916 23 C -0.192 4.192 24 N -0.551 5.551 25 Si 0.733 3.267 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.216 1.216 29 C -0.007 4.007 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.015 0.985 50 H 0.061 0.939 51 H 0.112 0.888 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.131 3.193 7.514 23.589 hybrid contribution 0.619 -0.826 0.233 1.058 sum -21.513 2.367 7.747 22.987 Atomic orbital electron populations 1.21759 0.94149 1.02160 1.02179 1.21510 0.96095 1.00204 0.94770 0.90586 1.21606 0.95118 1.00963 0.97566 1.21932 0.96084 1.01622 0.97641 1.21850 0.98857 0.97495 0.83630 1.48110 1.06891 1.60445 1.17984 1.20552 0.87989 0.77390 0.83613 1.90765 1.73979 1.45957 1.28275 1.19560 0.87284 0.83646 0.78969 1.90874 1.67700 1.30513 1.48781 1.48804 1.08909 1.11900 1.63359 1.22439 0.96484 0.85457 0.98332 1.22828 0.95233 1.00419 0.98574 1.22626 0.96713 0.95324 1.00372 1.22889 0.75915 0.97691 1.02445 0.89769 1.21188 0.85270 0.99718 0.92155 1.43844 0.98916 1.03818 1.84919 1.20870 0.93887 0.84926 0.98781 1.19266 1.03716 0.87956 1.27154 0.91564 1.25196 0.99850 0.97143 0.96974 1.70017 1.22497 1.27988 1.34634 0.86203 0.79876 0.83176 0.77472 1.20191 1.21697 1.21634 1.21747 0.78519 1.01249 0.99233 0.92200 0.92283 0.92398 0.91562 0.91400 0.91211 0.90166 0.89431 0.90514 0.91033 0.91452 0.90807 0.90105 0.89401 0.90775 0.92437 0.94700 0.94645 0.94436 0.98483 0.93884 0.88794 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.20 37.16 0.34 -0.45 16 2 C -0.11 -0.74 2.87 -90.51 -0.26 -1.00 16 3 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.11 -0.72 5.17 -26.69 -0.14 -0.86 16 5 C -0.13 -1.01 6.08 -26.61 -0.16 -1.17 16 6 C 0.10 1.06 6.36 -3.71 -0.02 1.04 16 7 N -0.60 -7.15 2.97 -173.29 -0.52 -7.67 16 8 C 0.52 8.29 6.49 -11.59 -0.08 8.21 16 9 O -0.52 -9.40 16.53 5.50 0.09 -9.31 16 10 C 0.52 9.47 5.37 -11.59 -0.06 9.41 16 11 O -0.50 -11.03 16.21 5.49 0.09 -10.94 16 12 N -0.59 -9.85 3.06 -163.38 -0.50 -10.35 16 13 C 0.10 1.21 6.66 -2.41 -0.02 1.19 16 14 C -0.13 -1.56 7.10 -24.47 -0.17 -1.73 16 15 C -0.11 -1.80 5.32 -24.90 -0.13 -1.94 16 16 C 0.11 2.20 3.09 -66.95 -0.21 1.99 16 17 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 18 C 0.15 3.24 5.21 -4.04 -0.02 3.22 16 19 N -0.59 -15.17 2.85 -181.12 -0.52 -15.69 16 20 C 0.16 3.87 7.68 59.85 0.46 4.33 16 21 C -0.25 -7.12 9.58 -15.06 -0.14 -7.26 16 22 H 0.07 1.93 7.84 -52.48 -0.41 1.52 16 23 C 0.01 0.19 5.21 -17.43 -0.09 0.10 16 24 N -0.91 -26.03 10.86 55.49 0.60 -25.42 16 25 Si 0.90 22.37 29.56 -169.99 -5.02 17.34 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 C 0.11 1.07 5.70 -3.73 -0.02 1.05 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 1.09 6.29 -51.93 -0.33 0.76 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.07 0.73 7.77 -51.93 -0.40 0.32 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 1.56 8.13 -51.93 -0.42 1.14 16 44 H 0.07 1.20 7.11 -51.93 -0.37 0.83 16 45 H 0.06 1.42 6.72 -51.93 -0.35 1.07 16 46 H 0.03 0.73 7.78 -51.93 -0.40 0.33 16 47 H 0.04 0.89 7.02 -51.93 -0.36 0.53 16 48 H 0.04 0.98 7.63 -51.93 -0.40 0.58 16 49 H 0.00 -0.07 7.73 -51.93 -0.40 -0.47 16 50 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.09 1.00 7.03 -51.93 -0.36 0.63 16 52 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 403.79 15.07 6.09 6.09 Total: -1.00 -33.11 403.79 -9.68 -42.79 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -9.27 Total: -3.00 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: -0.73 Total: 16.15 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.93 Total: -59.13 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.18 Total: -20.25 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.11 -9.68 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275150268.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.474 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds