Wall clock time and date at job start Tue Mar 31 2020 22:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.49901 * 2 1 4 4 C 1.53040 * 109.53009 * 120.08397 * 2 1 3 5 5 C 1.53042 * 109.53846 * 181.33099 * 4 2 1 6 6 C 1.53183 * 109.31538 * 298.63649 * 5 4 2 7 7 N 1.46962 * 108.89249 * 54.55455 * 6 5 4 8 8 C 1.34777 * 120.65315 * 126.46233 * 7 6 5 9 9 O 1.21284 * 119.99795 * 183.44344 * 8 7 6 10 10 C 1.50695 * 120.00043 * 3.43963 * 8 7 6 11 11 C 1.52998 * 117.49889 * 248.62228 * 10 8 7 12 12 C 1.53001 * 60.00115 * 252.51018 * 11 10 8 13 13 C 1.46928 * 118.71612 * 306.65018 * 7 6 5 14 14 H 1.08996 * 109.58571 * 293.49740 * 13 7 6 15 15 C 1.52991 * 109.58871 * 173.21229 * 13 7 6 16 16 C 1.53008 * 109.47300 * 292.05164 * 15 13 7 17 17 N 1.46898 * 109.47382 * 173.65033 * 16 15 13 18 18 C 1.46891 * 111.00177 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47361 * 180.02562 * 18 17 16 20 20 O 1.21289 * 119.99851 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99851 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99621 * 179.72256 * 21 19 18 23 23 H 1.08004 * 120.00403 * 0.27776 * 22 21 19 24 24 C 1.38947 * 119.99899 * 180.27702 * 22 21 19 25 25 N 1.31413 * 120.00245 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99917 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47215 * 90.00608 * 26 24 22 28 28 H 1.48509 * 109.47251 * 210.00053 * 26 24 22 29 29 H 1.48497 * 109.47561 * 330.00319 * 26 24 22 30 30 H 1.09002 * 109.47308 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47064 * 300.05884 * 1 2 3 32 32 H 1.08997 * 109.47430 * 60.06282 * 1 2 3 33 33 H 1.09003 * 109.45734 * 301.35233 * 4 2 1 34 34 H 1.09000 * 109.45665 * 61.32335 * 4 2 1 35 35 H 1.08997 * 109.49432 * 58.58855 * 5 4 2 36 36 H 1.09002 * 109.49167 * 178.68175 * 5 4 2 37 37 H 1.09001 * 109.59090 * 174.42512 * 6 5 4 38 38 H 1.09007 * 109.58424 * 294.70619 * 6 5 4 39 39 H 1.08998 * 115.54949 * 34.32735 * 10 8 7 40 40 H 1.08999 * 117.50077 * 359.97438 * 11 10 8 41 41 H 1.09003 * 117.50176 * 145.02390 * 11 10 8 42 42 H 1.09000 * 117.50082 * 252.51259 * 12 11 10 43 43 H 1.08998 * 117.50014 * 107.48440 * 12 11 10 44 44 H 1.08996 * 109.47328 * 172.05112 * 15 13 7 45 45 H 1.09001 * 109.47351 * 52.04652 * 15 13 7 46 46 H 1.08999 * 109.46787 * 53.64677 * 16 15 13 47 47 H 1.09002 * 109.46288 * 293.65142 * 16 15 13 48 48 H 1.00905 * 110.99858 * 303.95815 * 17 16 15 49 49 H 1.09004 * 109.47102 * 59.99669 * 18 17 16 50 50 H 1.09003 * 109.47340 * 300.00592 * 18 17 16 51 51 H 0.97000 * 120.00247 * 359.97438 * 21 19 18 52 52 H 0.96999 * 120.00322 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0416 -0.7230 1.2481 5 6 3.5716 -0.6942 1.2652 6 6 4.1060 -1.4254 0.0297 7 7 3.5045 -0.8309 -1.1722 8 6 4.2801 -0.3895 -2.1822 9 8 3.7753 0.1556 -3.1409 10 6 5.7746 -0.5730 -2.1203 11 6 6.6342 0.6817 -1.9548 12 6 6.5999 -0.0504 -3.2978 13 6 2.0412 -0.7233 -1.2499 14 1 1.6037 -1.7204 -1.2997 15 6 1.6509 0.0709 -2.4979 16 6 2.0899 1.5274 -2.3336 17 7 1.8535 2.2546 -3.5878 18 6 2.2636 3.6599 -3.4669 19 6 2.0060 4.3723 -4.7697 20 8 1.5283 3.7686 -5.7069 21 7 2.3075 5.6801 -4.8937 22 6 2.0785 6.3268 -6.0807 23 1 1.6523 5.7894 -6.9150 24 6 2.3946 7.6736 -6.2104 25 7 2.1746 8.2936 -7.3480 26 14 3.1310 8.6032 -4.7672 27 1 4.6120 8.5060 -4.8195 28 1 2.7259 10.0302 -4.8389 29 1 2.6409 8.0128 -3.4959 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3634 0.5128 -0.8905 33 1 1.6590 -0.2247 2.1388 34 1 1.6981 -1.7574 1.2348 35 1 3.9161 0.3398 1.2533 36 1 3.9347 -1.1888 2.1661 37 1 5.1902 -1.3228 -0.0152 38 1 3.8409 -2.4812 0.0869 39 1 6.1163 -1.4856 -1.6319 40 1 6.1188 1.6401 -1.8911 41 1 7.5417 0.5949 -1.3573 42 1 7.4848 -0.6189 -3.5839 43 1 6.0619 0.4262 -4.1173 44 1 0.5699 0.0301 -2.6312 45 1 2.1411 -0.3599 -3.3709 46 1 3.1514 1.5614 -2.0884 47 1 1.5165 1.9912 -1.5310 48 1 2.3228 1.8057 -4.3601 49 1 3.3262 3.7092 -3.2293 50 1 1.6912 4.1384 -2.6722 51 1 2.6899 6.1629 -4.1443 52 1 2.3950 9.2339 -7.4384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316681427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:13 Heat of formation + Delta-G solvation = -15.804370 kcal Electronic energy + Delta-G solvation = -30892.724810 eV Core-core repulsion = 26894.107363 eV Total energy + Delta-G solvation = -3998.617447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.88 seconds Orbital eigenvalues (eV) -41.28146 -38.41945 -38.27792 -36.62518 -35.43276 -34.12403 -33.72524 -32.85729 -31.54915 -29.73254 -27.42857 -26.42860 -25.43321 -23.98024 -23.29356 -22.71028 -22.50100 -21.63015 -19.97402 -19.26247 -18.91962 -18.16800 -17.52265 -16.43185 -16.18432 -15.73886 -15.41017 -15.15454 -14.99677 -14.91548 -14.70255 -14.45770 -13.97416 -13.73955 -13.57598 -13.28085 -13.13197 -12.86413 -12.84283 -12.61556 -12.33057 -12.18570 -12.07604 -11.95777 -11.79672 -11.67538 -11.51996 -11.25202 -11.19665 -11.09746 -11.03876 -10.79805 -10.65588 -10.55770 -10.51912 -10.34046 -9.88706 -9.47135 -9.10354 -8.68452 -8.39985 -8.07949 -7.75737 -6.22156 -3.72709 2.30391 2.66645 3.09424 3.12886 3.20265 3.61123 3.88919 4.11777 4.18007 4.32937 4.39327 4.44435 4.49621 4.55660 4.60209 4.63675 4.78324 4.88553 4.98938 5.06647 5.11216 5.29292 5.30324 5.32358 5.33687 5.36305 5.38766 5.43435 5.50546 5.59495 5.61139 5.69404 5.72247 5.76723 5.82042 5.85313 5.92379 5.94222 5.98681 6.03644 6.08616 6.12255 6.23866 6.41964 6.64340 7.20813 7.47397 7.71044 7.92055 8.15609 8.26096 8.71268 9.05503 9.53225 9.96118 10.91432 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013274 B = 0.002880 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.898866 B = 9721.313296 C =10550.093287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 H 0.080 0.920 4 C -0.115 4.115 5 C -0.135 4.135 6 C 0.109 3.891 7 N -0.606 5.606 8 C 0.536 3.464 9 O -0.511 6.511 10 C -0.198 4.198 11 C -0.153 4.153 12 C -0.146 4.146 13 C 0.156 3.844 14 H 0.071 0.929 15 C -0.120 4.120 16 C 0.080 3.920 17 N -0.664 5.664 18 C 0.051 3.949 19 C 0.454 3.546 20 O -0.562 6.562 21 N -0.595 5.595 22 C -0.301 4.301 23 H 0.119 0.881 24 C 0.040 3.960 25 N -0.885 5.885 26 Si 0.879 3.121 27 H -0.272 1.272 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.033 0.967 47 H 0.049 0.951 48 H 0.355 0.645 49 H 0.037 0.963 50 H 0.080 0.920 51 H 0.369 0.631 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.652 -21.957 23.152 32.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.173 4.173 6 C -0.015 4.015 7 N -0.339 5.339 8 C 0.325 3.675 9 O -0.387 6.387 10 C -0.219 4.219 11 C -0.191 4.191 12 C -0.184 4.184 13 C 0.053 3.947 14 H 0.089 0.911 15 C -0.158 4.158 16 C -0.049 4.049 17 N -0.297 5.297 18 C -0.082 4.082 19 C 0.240 3.760 20 O -0.443 6.443 21 N -0.235 5.235 22 C -0.430 4.430 23 H 0.137 0.863 24 C -0.163 4.163 25 N -0.526 5.526 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.081 0.919 45 H 0.123 0.877 46 H 0.051 0.949 47 H 0.067 0.933 48 H 0.175 0.825 49 H 0.055 0.945 50 H 0.098 0.902 51 H 0.202 0.798 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.395 -21.755 21.988 31.585 hybrid contribution 1.599 0.788 1.375 2.251 sum 7.994 -20.967 23.363 32.393 Atomic orbital electron populations 1.21816 0.94129 1.01931 1.02617 1.21652 0.96385 1.00530 0.94129 0.90177 1.21604 0.94909 1.00821 0.97964 1.21914 0.96481 1.01502 0.97447 1.21731 0.98496 0.96947 0.84280 1.47982 1.06562 1.61484 1.17895 1.19586 0.87414 0.78114 0.82397 1.90760 1.73133 1.41094 1.33733 1.22277 0.91393 1.00542 1.07648 1.22910 1.00489 0.94897 1.00789 1.22968 1.00740 1.02399 0.92264 1.21368 0.78468 0.98956 0.95913 0.91079 1.22149 1.00662 0.95391 0.97577 1.22050 0.98043 0.92929 0.91910 1.60124 1.63196 1.00566 1.05826 1.21633 0.98189 0.90992 0.97370 1.19806 0.84046 0.82568 0.89587 1.90555 1.47022 1.65927 1.40844 1.42217 1.58326 1.09129 1.13842 1.19445 1.39552 0.93379 0.90641 0.86334 1.25019 0.97983 0.96350 0.96917 1.69626 1.47726 1.11156 1.24075 0.86675 0.79995 0.80432 0.82316 1.19735 1.20244 1.19521 0.92708 0.92502 0.91455 0.91627 0.91857 0.91390 0.90754 0.89598 0.91526 0.86262 0.88328 0.87999 0.88066 0.87123 0.91858 0.87740 0.94881 0.93316 0.82502 0.94457 0.90180 0.79809 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.97 37.16 0.33 -0.84 16 2 C -0.11 -0.89 1.93 -90.50 -0.17 -1.06 16 3 H 0.08 0.79 6.14 -51.93 -0.32 0.47 16 4 C -0.12 -0.71 5.17 -26.69 -0.14 -0.85 16 5 C -0.14 -0.73 6.08 -26.61 -0.16 -0.89 16 6 C 0.11 0.63 6.26 -3.70 -0.02 0.60 16 7 N -0.61 -5.36 2.94 -165.20 -0.49 -5.85 16 8 C 0.54 5.85 6.37 -10.99 -0.07 5.78 16 9 O -0.51 -7.32 9.20 5.55 0.05 -7.27 16 10 C -0.20 -1.65 4.87 -91.77 -0.45 -2.09 16 11 C -0.15 -1.24 10.23 -26.73 -0.27 -1.51 16 12 C -0.15 -1.32 10.04 -26.73 -0.27 -1.59 16 13 C 0.16 1.48 2.66 -67.60 -0.18 1.30 16 14 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 15 C -0.12 -1.53 4.31 -26.73 -0.12 -1.65 16 16 C 0.08 1.16 3.77 -3.82 -0.01 1.15 16 17 N -0.66 -12.34 6.12 -115.06 -0.70 -13.04 16 18 C 0.05 0.99 6.17 -4.98 -0.03 0.96 16 19 C 0.45 11.29 7.82 -10.98 -0.09 11.20 16 20 O -0.56 -16.32 15.78 5.55 0.09 -16.23 16 21 N -0.60 -15.18 5.09 -10.96 -0.06 -15.23 16 22 C -0.30 -8.95 10.16 -14.93 -0.15 -9.11 16 23 H 0.12 4.01 7.39 -52.48 -0.39 3.62 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.89 -26.77 13.96 55.50 0.77 -25.99 16 26 Si 0.88 20.20 27.74 -169.99 -4.71 15.49 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H -0.27 -5.70 6.52 56.52 0.37 -5.33 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.64 6.80 -51.93 -0.35 0.29 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.40 5.80 -51.93 -0.30 0.10 16 38 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 39 H 0.12 0.72 6.98 -51.93 -0.36 0.35 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 1.28 7.67 -51.93 -0.40 0.88 16 44 H 0.06 0.82 7.03 -51.93 -0.37 0.46 16 45 H 0.10 1.56 5.71 -53.22 -0.30 1.26 16 46 H 0.03 0.50 5.34 -51.93 -0.28 0.22 16 47 H 0.05 0.69 6.61 -51.93 -0.34 0.34 16 48 H 0.35 7.22 7.88 -39.29 -0.31 6.91 16 49 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 51 H 0.37 8.32 5.76 -40.82 -0.24 8.08 16 52 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -34.81 395.15 -9.61 -44.42 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -8.62 Total: 15.32 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.90 Total: 2.44 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.47 Total: -60.12 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.14 Total: -23.51 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.71 Total: 15.49 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.81 -9.61 -44.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316681427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.615 kcal (2) G-P(sol) polarization free energy of solvation -34.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.88 seconds