Wall clock time and date at job start Tue Mar 31 2020 22:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.49994 * 2 1 4 4 C 1.53043 * 109.51925 * 239.92562 * 2 1 3 5 5 C 1.53046 * 109.53503 * 178.66482 * 4 2 1 6 6 C 1.53188 * 109.31093 * 61.36656 * 5 4 2 7 7 N 1.46925 * 108.77470 * 305.36341 * 6 5 4 8 8 C 1.34782 * 120.62898 * 233.60955 * 7 6 5 9 9 O 1.21277 * 120.00130 * 186.47124 * 8 7 6 10 10 C 1.50704 * 119.99981 * 6.46939 * 8 7 6 11 11 C 1.52999 * 117.49531 * 248.62230 * 10 8 7 12 12 C 1.52998 * 117.49604 * 180.02562 * 10 8 7 13 13 C 1.46923 * 118.74193 * 53.61340 * 7 6 5 14 14 H 1.08996 * 109.70728 * 66.24352 * 13 7 6 15 15 C 1.52992 * 109.58611 * 186.60571 * 13 7 6 16 16 C 1.53000 * 109.47594 * 65.81988 * 15 13 7 17 17 N 1.46901 * 109.47281 * 175.71064 * 16 15 13 18 18 C 1.46896 * 110.99993 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47307 * 179.97438 * 18 17 16 20 20 O 1.21290 * 119.99740 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00076 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00178 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99791 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00328 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99658 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99908 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47148 * 60.00027 * 26 24 22 28 28 H 1.48496 * 109.46984 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46993 * 299.99758 * 26 24 22 30 30 H 1.09002 * 109.46564 * 299.92847 * 1 2 3 31 31 H 1.08998 * 109.46980 * 59.92851 * 1 2 3 32 32 H 1.08995 * 109.46916 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46337 * 298.68183 * 4 2 1 34 34 H 1.09002 * 109.46010 * 58.64971 * 4 2 1 35 35 H 1.09002 * 109.49511 * 181.31644 * 5 4 2 36 36 H 1.09002 * 109.49830 * 301.37982 * 5 4 2 37 37 H 1.09006 * 109.59103 * 65.15116 * 6 5 4 38 38 H 1.09004 * 109.58738 * 185.42891 * 6 5 4 39 39 H 1.08999 * 115.55111 * 34.32243 * 10 8 7 40 40 H 1.09002 * 117.50471 * 359.97438 * 11 10 8 41 41 H 1.09006 * 117.50127 * 145.02056 * 11 10 8 42 42 H 1.09004 * 117.49450 * 214.97728 * 12 10 8 43 43 H 1.08997 * 117.50187 * 359.97438 * 12 10 8 44 44 H 1.08998 * 109.47092 * 305.81344 * 15 13 7 45 45 H 1.09005 * 109.47063 * 185.81671 * 15 13 7 46 46 H 1.09002 * 109.46784 * 295.70551 * 16 15 13 47 47 H 1.09000 * 109.47128 * 55.70601 * 16 15 13 48 48 H 1.00894 * 111.00302 * 56.04253 * 17 16 15 49 49 H 1.09003 * 109.47325 * 300.00000 * 18 17 16 50 50 H 1.09008 * 109.47136 * 59.99528 * 18 17 16 51 51 H 0.96999 * 120.00130 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99641 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7229 -1.2483 5 6 3.5715 -0.6940 -1.2656 6 6 4.1059 -1.4255 -0.0303 7 7 3.5047 -0.8282 1.1699 8 6 4.2809 -0.3847 2.1786 9 8 3.7731 -0.0023 3.2115 10 6 5.7797 -0.3641 2.0231 11 6 6.5916 -1.3433 2.8733 12 6 6.6054 0.1499 3.2041 13 6 2.0414 -0.7236 1.2497 14 1 1.6038 -1.7206 1.2993 15 6 1.6513 0.0705 2.4978 16 6 2.1340 1.5153 2.3547 17 7 1.6708 2.3026 3.5052 18 6 2.1172 3.6983 3.4020 19 6 1.6238 4.4732 4.5967 20 8 0.9655 3.9173 5.4503 21 7 1.9148 5.7836 4.7170 22 6 1.4664 6.4884 5.8040 23 1 0.8803 5.9934 6.5642 24 6 1.7661 7.8396 5.9278 25 7 2.4797 8.4417 5.0031 26 14 1.1557 8.7997 7.4094 27 1 1.7032 8.1956 8.6506 28 1 1.6072 10.2105 7.3053 29 1 -0.3282 8.7560 7.4505 30 1 -0.3632 0.5127 0.8907 31 1 -0.3633 0.5149 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6978 -1.7572 -1.2353 34 1 1.6587 -0.2244 -2.1389 35 1 3.9345 -1.1886 -2.1666 36 1 3.9161 0.3400 -1.2542 37 1 3.8387 -2.4808 -0.0863 38 1 5.1905 -1.3251 0.0131 39 1 6.1453 -0.1452 1.0199 40 1 6.0418 -2.0022 3.5454 41 1 7.4917 -1.7689 2.4294 42 1 7.5145 0.7072 2.9779 43 1 6.0646 0.4736 4.0934 44 1 2.1133 -0.3817 3.3753 45 1 0.5672 0.0593 2.6115 46 1 3.2232 1.5324 2.3176 47 1 1.7323 1.9433 1.4362 48 1 1.9765 1.8888 4.3731 49 1 3.2063 3.7303 3.3723 50 1 1.7157 4.1417 2.4907 51 1 2.4416 6.2281 4.0344 52 1 2.6892 9.3849 5.0898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316681429.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:31 Heat of formation + Delta-G solvation = -22.765877 kcal Electronic energy + Delta-G solvation = -30631.714506 eV Core-core repulsion = 26632.795186 eV Total energy + Delta-G solvation = -3998.919321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -41.23811 -38.39540 -38.09800 -36.58886 -35.38185 -34.07707 -33.67675 -32.79304 -31.10925 -29.62948 -27.33109 -26.37170 -25.39719 -24.02546 -23.29792 -22.66783 -22.55427 -21.56009 -19.92234 -19.15786 -18.89410 -17.76792 -17.48711 -16.38602 -16.11767 -15.64806 -15.52152 -15.15775 -14.87261 -14.72745 -14.41975 -14.38596 -14.07368 -13.76423 -13.69336 -13.30170 -13.12765 -12.85694 -12.75949 -12.53312 -12.16172 -12.03440 -11.93870 -11.79316 -11.66498 -11.50845 -11.39529 -11.16474 -11.15687 -11.01046 -10.89976 -10.75428 -10.67179 -10.54395 -10.37664 -10.30628 -10.11920 -9.40197 -8.97986 -8.69724 -8.27168 -7.86624 -7.68423 -6.32345 -3.72587 2.32363 2.71506 3.26735 3.30986 3.36237 3.60620 4.04700 4.14528 4.23618 4.35967 4.47538 4.51556 4.54200 4.59808 4.64169 4.68221 4.80229 4.93858 5.08367 5.13259 5.29308 5.30496 5.34311 5.35582 5.37613 5.40292 5.42578 5.47421 5.56401 5.64876 5.68718 5.70835 5.75924 5.82533 5.90244 5.92454 5.96171 6.01160 6.07410 6.16278 6.19574 6.32000 6.40492 6.49059 6.71050 7.24978 7.56855 7.63964 7.99137 8.13622 8.18356 8.73050 9.28081 9.65989 10.18739 10.85774 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.002609 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.585770 B =10729.748959 C =11836.563004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 H 0.082 0.918 4 C -0.115 4.115 5 C -0.137 4.137 6 C 0.108 3.892 7 N -0.606 5.606 8 C 0.540 3.460 9 O -0.512 6.512 10 C -0.198 4.198 11 C -0.154 4.154 12 C -0.146 4.146 13 C 0.158 3.842 14 H 0.071 0.929 15 C -0.129 4.129 16 C 0.067 3.933 17 N -0.666 5.666 18 C 0.053 3.947 19 C 0.445 3.555 20 O -0.582 6.582 21 N -0.567 5.567 22 C -0.297 4.297 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.905 5.905 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.053 0.947 48 H 0.350 0.650 49 H 0.038 0.962 50 H 0.079 0.921 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.940 -22.415 -16.868 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 H 0.100 0.900 4 C -0.153 4.153 5 C -0.176 4.176 6 C -0.015 4.015 7 N -0.339 5.339 8 C 0.329 3.671 9 O -0.389 6.389 10 C -0.219 4.219 11 C -0.191 4.191 12 C -0.184 4.184 13 C 0.055 3.945 14 H 0.089 0.911 15 C -0.166 4.166 16 C -0.062 4.062 17 N -0.298 5.298 18 C -0.080 4.080 19 C 0.230 3.770 20 O -0.466 6.466 21 N -0.204 5.204 22 C -0.427 4.427 23 H 0.119 0.881 24 C -0.180 4.180 25 N -0.547 5.547 26 Si 0.757 3.243 27 H -0.200 1.200 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.138 0.862 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.170 0.830 49 H 0.056 0.944 50 H 0.098 0.902 51 H 0.225 0.775 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.658 -22.252 -16.007 28.209 hybrid contribution 1.052 0.822 0.055 1.336 sum 7.710 -21.430 -15.952 27.806 Atomic orbital electron populations 1.21817 0.94082 1.01852 1.02734 1.21664 0.96456 1.00596 0.94047 0.90020 1.21601 0.94862 1.00798 0.97999 1.21946 0.96577 1.01504 0.97528 1.21735 0.98502 0.96969 0.84251 1.47982 1.06603 1.61158 1.18172 1.19573 0.87477 0.76851 0.83242 1.90709 1.73219 1.46392 1.28583 1.22296 0.91623 1.09453 0.98572 1.22904 1.00956 0.93430 1.01819 1.22964 1.00772 0.96132 0.98508 1.21335 0.78361 0.98953 0.95895 0.91108 1.22223 1.00922 0.95427 0.98055 1.22237 0.97762 0.92619 0.93560 1.60128 1.63493 1.00696 1.05467 1.21609 0.97397 0.90378 0.98573 1.19890 0.85453 0.83113 0.88532 1.90510 1.43033 1.69356 1.43656 1.41857 1.48255 1.07556 1.22759 1.19661 1.30859 0.91536 1.00602 0.88051 1.25241 0.97158 0.96902 0.98742 1.69613 1.38773 1.11963 1.34308 0.85927 0.79154 0.78041 0.81141 1.19967 1.21040 1.19931 0.91332 0.92497 0.92787 0.91889 0.91608 0.90778 0.91364 0.91408 0.89588 0.86158 0.88321 0.88036 0.87990 0.87179 0.87261 0.91568 0.94506 0.92860 0.83034 0.94401 0.90229 0.77543 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.97 37.16 0.33 -0.96 16 2 C -0.11 -0.96 1.99 -90.50 -0.18 -1.14 16 3 H 0.08 0.87 5.93 -51.93 -0.31 0.56 16 4 C -0.12 -0.77 5.17 -26.69 -0.14 -0.90 16 5 C -0.14 -0.79 6.08 -26.61 -0.16 -0.95 16 6 C 0.11 0.67 6.34 -3.71 -0.02 0.64 16 7 N -0.61 -5.64 2.94 -165.23 -0.49 -6.12 16 8 C 0.54 6.11 6.07 -10.98 -0.07 6.05 16 9 O -0.51 -7.57 10.12 5.56 0.06 -7.51 16 10 C -0.20 -1.72 4.96 -91.77 -0.45 -2.18 16 11 C -0.15 -1.14 10.23 -26.76 -0.27 -1.42 16 12 C -0.15 -1.35 10.04 -26.76 -0.27 -1.61 16 13 C 0.16 1.59 2.66 -67.61 -0.18 1.41 16 14 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 15 C -0.13 -1.72 4.34 -26.74 -0.12 -1.84 16 16 C 0.07 1.03 4.37 -3.82 -0.02 1.02 16 17 N -0.67 -12.83 6.13 -115.05 -0.70 -13.53 16 18 C 0.05 1.09 6.17 -4.98 -0.03 1.06 16 19 C 0.44 11.47 7.82 -10.99 -0.09 11.38 16 20 O -0.58 -17.05 15.78 5.55 0.09 -16.96 16 21 N -0.57 -15.35 5.29 -10.96 -0.06 -15.41 16 22 C -0.30 -8.71 9.68 -14.93 -0.14 -8.85 16 23 H 0.10 3.10 7.16 -52.48 -0.38 2.73 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -25.57 13.05 55.50 0.72 -24.85 16 26 Si 0.93 21.88 29.55 -169.99 -5.02 16.86 16 27 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 29 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 30 H 0.07 0.72 6.75 -51.93 -0.35 0.37 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.42 5.65 -51.93 -0.29 0.13 16 39 H 0.12 0.81 6.86 -51.93 -0.36 0.45 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.11 1.28 7.67 -51.93 -0.40 0.88 16 44 H 0.11 1.68 5.58 -53.72 -0.30 1.38 16 45 H 0.07 0.91 6.93 -51.93 -0.36 0.55 16 46 H 0.04 0.60 5.04 -51.93 -0.26 0.33 16 47 H 0.05 0.80 5.96 -51.93 -0.31 0.49 16 48 H 0.35 7.30 8.43 -39.30 -0.33 6.96 16 49 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 51 H 0.39 10.14 7.90 -40.82 -0.32 9.81 16 52 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -33.65 398.58 -9.90 -43.55 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -8.60 Total: 15.81 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.90 Total: 2.17 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.52 Total: -59.92 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.14 Total: -24.47 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.65 -9.90 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316681429.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.781 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds