Wall clock time and date at job start Tue Mar 31 2020 22:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.49994 * 2 1 4 4 C 1.53043 * 109.51925 * 239.92562 * 2 1 3 5 5 C 1.53046 * 109.53503 * 178.66482 * 4 2 1 6 6 C 1.53188 * 109.31093 * 61.36656 * 5 4 2 7 7 N 1.46925 * 108.77470 * 305.36341 * 6 5 4 8 8 C 1.34782 * 120.62898 * 233.60955 * 7 6 5 9 9 O 1.21277 * 120.00130 * 186.47124 * 8 7 6 10 10 C 1.50704 * 119.99981 * 6.46939 * 8 7 6 11 11 C 1.52999 * 117.49531 * 248.62230 * 10 8 7 12 12 C 1.52998 * 117.49604 * 180.02562 * 10 8 7 13 13 C 1.46923 * 118.74193 * 53.61340 * 7 6 5 14 14 H 1.08996 * 109.70728 * 66.24352 * 13 7 6 15 15 C 1.52992 * 109.58611 * 186.60571 * 13 7 6 16 16 C 1.53000 * 109.47594 * 65.81988 * 15 13 7 17 17 N 1.46901 * 109.47281 * 175.71064 * 16 15 13 18 18 C 1.46896 * 110.99993 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47307 * 179.97438 * 18 17 16 20 20 O 1.21290 * 119.99740 * 0.02562 * 19 18 17 21 21 N 1.34775 * 120.00076 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00178 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99791 * 0.02562 * 22 21 19 24 24 C 1.38951 * 120.00328 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99658 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99908 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47148 * 60.00027 * 26 24 22 28 28 H 1.48496 * 109.46984 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46993 * 299.99758 * 26 24 22 30 30 H 1.09002 * 109.46564 * 299.92847 * 1 2 3 31 31 H 1.08998 * 109.46980 * 59.92851 * 1 2 3 32 32 H 1.08995 * 109.46916 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46337 * 298.68183 * 4 2 1 34 34 H 1.09002 * 109.46010 * 58.64971 * 4 2 1 35 35 H 1.09002 * 109.49511 * 181.31644 * 5 4 2 36 36 H 1.09002 * 109.49830 * 301.37982 * 5 4 2 37 37 H 1.09006 * 109.59103 * 65.15116 * 6 5 4 38 38 H 1.09004 * 109.58738 * 185.42891 * 6 5 4 39 39 H 1.08999 * 115.55111 * 34.32243 * 10 8 7 40 40 H 1.09002 * 117.50471 * 359.97438 * 11 10 8 41 41 H 1.09006 * 117.50127 * 145.02056 * 11 10 8 42 42 H 1.09004 * 117.49450 * 214.97728 * 12 10 8 43 43 H 1.08997 * 117.50187 * 359.97438 * 12 10 8 44 44 H 1.08998 * 109.47092 * 305.81344 * 15 13 7 45 45 H 1.09005 * 109.47063 * 185.81671 * 15 13 7 46 46 H 1.09002 * 109.46784 * 295.70551 * 16 15 13 47 47 H 1.09000 * 109.47128 * 55.70601 * 16 15 13 48 48 H 1.00894 * 111.00302 * 56.04253 * 17 16 15 49 49 H 1.09003 * 109.47325 * 300.00000 * 18 17 16 50 50 H 1.09008 * 109.47136 * 59.99528 * 18 17 16 51 51 H 0.96999 * 120.00130 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99641 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7229 -1.2483 5 6 3.5715 -0.6940 -1.2656 6 6 4.1059 -1.4255 -0.0303 7 7 3.5047 -0.8282 1.1699 8 6 4.2809 -0.3847 2.1786 9 8 3.7731 -0.0023 3.2115 10 6 5.7797 -0.3641 2.0231 11 6 6.5916 -1.3433 2.8733 12 6 6.6054 0.1499 3.2041 13 6 2.0414 -0.7236 1.2497 14 1 1.6038 -1.7206 1.2993 15 6 1.6513 0.0705 2.4978 16 6 2.1340 1.5153 2.3547 17 7 1.6708 2.3026 3.5052 18 6 2.1172 3.6983 3.4020 19 6 1.6238 4.4732 4.5967 20 8 0.9655 3.9173 5.4503 21 7 1.9148 5.7836 4.7170 22 6 1.4664 6.4884 5.8040 23 1 0.8803 5.9934 6.5642 24 6 1.7661 7.8396 5.9278 25 7 2.4797 8.4417 5.0031 26 14 1.1557 8.7997 7.4094 27 1 1.7032 8.1956 8.6506 28 1 1.6072 10.2105 7.3053 29 1 -0.3282 8.7560 7.4505 30 1 -0.3632 0.5127 0.8907 31 1 -0.3633 0.5149 -0.8893 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6978 -1.7572 -1.2353 34 1 1.6587 -0.2244 -2.1389 35 1 3.9345 -1.1886 -2.1666 36 1 3.9161 0.3400 -1.2542 37 1 3.8387 -2.4808 -0.0863 38 1 5.1905 -1.3251 0.0131 39 1 6.1453 -0.1452 1.0199 40 1 6.0418 -2.0022 3.5454 41 1 7.4917 -1.7689 2.4294 42 1 7.5145 0.7072 2.9779 43 1 6.0646 0.4736 4.0934 44 1 2.1133 -0.3817 3.3753 45 1 0.5672 0.0593 2.6115 46 1 3.2232 1.5324 2.3176 47 1 1.7323 1.9433 1.4362 48 1 1.9765 1.8888 4.3731 49 1 3.2063 3.7303 3.3723 50 1 1.7157 4.1417 2.4907 51 1 2.4416 6.2281 4.0344 52 1 2.6892 9.3849 5.0898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316681429.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:28 Heat of formation + Delta-G solvation = -46.019594 kcal Electronic energy + Delta-G solvation = -30632.722863 eV Core-core repulsion = 26632.795186 eV Total energy + Delta-G solvation = -3999.927677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -42.06154 -40.16887 -39.11546 -37.48440 -36.63827 -35.89795 -34.80823 -33.68826 -33.27023 -30.69451 -28.60131 -27.28329 -26.70256 -25.52943 -24.12767 -23.71655 -23.31306 -22.27135 -21.12637 -20.71330 -19.95415 -19.71567 -18.25848 -17.90989 -17.23495 -16.95216 -16.53524 -16.37262 -16.18855 -15.96333 -15.75990 -15.57686 -15.14783 -15.01521 -14.75654 -14.53066 -14.23477 -14.04585 -13.64082 -13.53834 -13.49066 -13.35188 -13.18338 -12.94855 -12.81696 -12.60200 -12.46499 -12.46311 -12.40762 -12.16261 -12.12738 -11.84372 -11.70209 -11.53736 -11.47095 -11.37994 -11.33617 -11.12315 -10.38825 -10.05285 -9.90013 -9.51321 -9.21078 -8.48897 -5.98445 1.38174 1.39343 1.51300 1.51786 1.99615 2.00317 2.27667 2.92370 2.93621 3.17198 3.45974 3.56013 3.76539 3.79181 3.89029 3.94583 3.98240 4.09414 4.15290 4.21639 4.26018 4.34267 4.38005 4.42904 4.48224 4.56263 4.61834 4.65896 4.72917 4.73889 4.83860 4.85877 4.90063 4.94102 4.98223 5.04293 5.14207 5.20425 5.21676 5.24136 5.25267 5.36615 5.37734 5.45372 5.55733 5.72672 5.90798 6.15709 6.38170 6.50603 6.57115 7.08863 7.29734 7.51232 8.07076 8.68639 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014007 B = 0.002609 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.585770 B =10729.748959 C =11836.563004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 H 0.062 0.938 4 C -0.111 4.111 5 C -0.133 4.133 6 C 0.103 3.897 7 N -0.602 5.602 8 C 0.528 3.472 9 O -0.558 6.558 10 C -0.197 4.197 11 C -0.133 4.133 12 C -0.165 4.165 13 C 0.161 3.839 14 H 0.082 0.918 15 C -0.120 4.120 16 C 0.079 3.921 17 N -0.677 5.677 18 C 0.069 3.931 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.571 5.571 22 C -0.338 4.338 23 H 0.078 0.922 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.996 3.004 27 H -0.272 1.272 28 H -0.267 1.267 29 H -0.271 1.271 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.148 0.852 40 H 0.086 0.914 41 H 0.134 0.866 42 H 0.119 0.881 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.034 0.966 47 H 0.059 0.941 48 H 0.338 0.662 49 H 0.052 0.948 50 H 0.099 0.901 51 H 0.396 0.604 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.188 -23.252 -19.266 31.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 H 0.080 0.920 4 C -0.149 4.149 5 C -0.171 4.171 6 C -0.019 4.019 7 N -0.334 5.334 8 C 0.318 3.682 9 O -0.439 6.439 10 C -0.217 4.217 11 C -0.170 4.170 12 C -0.203 4.203 13 C 0.057 3.943 14 H 0.100 0.900 15 C -0.158 4.158 16 C -0.050 4.050 17 N -0.308 5.308 18 C -0.064 4.064 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.208 5.208 22 C -0.467 4.467 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.819 3.181 27 H -0.197 1.197 28 H -0.191 1.191 29 H -0.196 1.196 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.165 0.835 40 H 0.105 0.895 41 H 0.152 0.848 42 H 0.137 0.863 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.077 0.923 48 H 0.156 0.844 49 H 0.070 0.930 50 H 0.117 0.883 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.929 -23.101 -18.482 30.629 hybrid contribution 0.660 1.060 0.780 1.472 sum 8.590 -22.041 -17.701 29.546 Atomic orbital electron populations 1.21794 0.94142 1.02469 1.01876 1.21595 0.96363 0.99629 0.94690 0.91964 1.21586 0.95626 1.01090 0.96586 1.21937 0.95726 1.01154 0.98297 1.22033 0.99467 0.97589 0.82766 1.48094 1.06092 1.60436 1.18805 1.20138 0.88831 0.76299 0.82962 1.90705 1.74227 1.48550 1.30398 1.22353 0.89777 1.10006 0.99607 1.22975 1.01369 0.92017 1.00645 1.22933 1.01379 0.98172 0.97790 1.21249 0.79340 0.98952 0.94716 0.89967 1.22060 0.99876 0.94528 0.99290 1.22241 0.97479 0.93251 0.91995 1.60198 1.63962 1.00474 1.06174 1.21462 0.97988 0.90473 0.96466 1.20788 0.84395 0.82848 0.89397 1.90474 1.44790 1.70079 1.45561 1.41904 1.48343 1.08063 1.22491 1.19662 1.32790 0.92720 1.01551 0.90399 1.26093 0.96581 0.97039 1.01512 1.69675 1.38414 1.12630 1.35392 0.84954 0.78619 0.77131 0.77401 1.19679 1.19110 1.19626 0.93768 0.91732 0.91452 0.90693 0.90973 0.88230 0.92433 0.89809 0.87818 0.83457 0.89547 0.84842 0.86293 0.90661 0.89416 0.92599 0.94851 0.92258 0.84438 0.93049 0.88295 0.77032 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.97 71.98 0.65 -1.78 16 2 C -0.10 -1.71 1.99 -10.71 -0.02 -1.73 16 3 H 0.06 1.28 5.93 -2.39 -0.01 1.27 16 4 C -0.11 -1.16 5.17 30.62 0.16 -1.00 16 5 C -0.13 -1.08 6.08 30.67 0.19 -0.90 16 6 C 0.10 0.93 6.34 86.36 0.55 1.48 16 7 N -0.60 -10.40 2.94 -795.04 -2.34 -12.73 16 8 C 0.53 11.83 6.07 87.66 0.53 12.36 16 9 O -0.56 -17.40 10.12 -3.02 -0.03 -17.43 16 10 C -0.20 -3.12 4.96 -11.54 -0.06 -3.18 16 11 C -0.13 -1.75 10.23 30.58 0.31 -1.44 16 12 C -0.17 -3.01 10.04 30.58 0.31 -2.70 16 13 C 0.16 3.13 2.66 44.97 0.12 3.25 16 14 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 15 C -0.12 -3.35 4.34 30.59 0.13 -3.22 16 16 C 0.08 2.49 4.37 86.30 0.38 2.87 16 17 N -0.68 -27.21 6.13 -517.92 -3.17 -30.38 16 18 C 0.07 2.87 6.17 85.56 0.53 3.40 16 19 C 0.44 23.43 7.82 87.66 0.69 24.11 16 20 O -0.62 -38.17 15.78 -3.06 -0.05 -38.22 16 21 N -0.57 -31.81 5.29 -306.98 -1.62 -33.43 16 22 C -0.34 -20.36 9.68 84.04 0.81 -19.55 16 23 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 24 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 25 N -0.92 -51.64 13.05 21.66 0.28 -51.35 16 26 Si 1.00 44.65 29.55 68.60 2.03 46.68 16 27 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 29 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 30 H 0.04 0.95 6.75 -2.39 -0.02 0.93 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.55 8.14 -2.38 -0.02 0.54 16 38 H 0.10 0.60 5.65 -2.38 -0.01 0.58 16 39 H 0.15 1.50 6.86 -2.39 -0.02 1.49 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.07 1.91 7.67 -2.39 -0.02 1.89 16 44 H 0.09 2.90 5.58 -30.78 -0.17 2.72 16 45 H 0.06 1.63 6.93 -2.38 -0.02 1.61 16 46 H 0.03 1.11 5.04 -2.39 -0.01 1.10 16 47 H 0.06 1.79 5.96 -2.39 -0.01 1.78 16 48 H 0.34 14.99 8.43 -89.70 -0.76 14.24 16 49 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.10 3.74 8.14 -2.38 -0.02 3.72 16 51 H 0.40 20.92 7.90 -92.71 -0.73 20.19 16 52 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -75.99 398.58 0.13 -75.86 By element: Atomic # 1 Polarization: 49.97 SS G_CDS: -0.70 Total: 49.27 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 5.74 Total: 11.75 kcal Atomic # 7 Polarization: -121.05 SS G_CDS: -6.85 Total: -127.90 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -0.08 Total: -55.65 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -75.99 0.13 -75.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316681429.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.836 kcal (2) G-P(sol) polarization free energy of solvation -75.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds