Wall clock time and date at job start Tue Mar 31 2020 19:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50699 * 109.47036 * 2 1 4 4 O 1.21282 * 120.00088 * 359.97438 * 3 2 1 5 5 N 1.34779 * 119.99863 * 180.02562 * 3 2 1 6 6 C 1.46499 * 119.99797 * 179.97438 * 5 3 2 7 7 C 1.50695 * 109.47107 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99927 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00484 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00651 * 179.97438 * 9 7 6 11 11 H 1.09005 * 112.92451 * 23.67700 * 10 9 7 12 12 C 1.54145 * 113.64212 * 252.35061 * 10 9 7 13 13 H 1.08995 * 114.73694 * 26.75202 * 12 10 9 14 14 C 1.53075 * 111.69228 * 157.46848 * 12 10 9 15 15 C 1.53022 * 109.42266 * 146.38416 * 14 12 10 16 16 C 1.52939 * 108.93096 * 295.36798 * 15 14 12 17 17 N 1.45891 * 109.88685 * 57.34455 * 16 15 14 18 18 C 1.36939 * 118.48027 * 140.65630 * 17 16 15 19 19 H 1.08006 * 119.99992 * 142.25435 * 18 17 16 20 20 C 1.38814 * 120.00323 * 322.24622 * 18 17 16 21 21 N 1.31618 * 120.00062 * 155.76666 * 20 18 17 22 22 Si 1.86796 * 119.99964 * 335.77660 * 20 18 17 23 23 H 1.48497 * 109.47356 * 85.03615 * 22 20 18 24 24 H 1.48499 * 109.47280 * 205.03946 * 22 20 18 25 25 H 1.48502 * 109.47171 * 325.03772 * 22 20 18 26 26 C 1.45085 * 123.03678 * 320.63833 * 17 16 15 27 27 H 1.09001 * 112.26239 * 155.81440 * 26 17 16 28 28 C 1.53397 * 114.62458 * 286.26365 * 26 17 16 29 29 C 1.52998 * 113.68250 * 257.75052 * 28 26 17 30 30 C 1.52993 * 113.68689 * 28.78792 * 28 26 17 31 31 H 1.08997 * 109.47648 * 300.00386 * 1 2 3 32 32 H 1.09005 * 109.47290 * 60.00325 * 1 2 3 33 33 H 1.08997 * 109.47495 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46755 * 239.99801 * 2 1 3 35 35 H 1.08995 * 109.46601 * 119.99864 * 2 1 3 36 36 H 0.96991 * 119.99836 * 359.97438 * 5 3 2 37 37 H 1.09003 * 109.46922 * 59.99838 * 6 5 3 38 38 H 1.08996 * 109.47178 * 300.00176 * 6 5 3 39 39 H 0.97005 * 119.99657 * 0.02562 * 9 7 6 40 40 H 1.08996 * 109.46265 * 26.39905 * 14 12 10 41 41 H 1.09003 * 109.48675 * 266.37746 * 14 12 10 42 42 H 1.08998 * 109.55782 * 175.53685 * 15 14 12 43 43 H 1.08994 * 109.56090 * 55.20425 * 15 14 12 44 44 H 1.09005 * 109.40100 * 297.21994 * 16 15 14 45 45 H 1.08994 * 109.33152 * 177.43259 * 16 15 14 46 46 H 0.97001 * 119.99990 * 180.02562 * 21 20 18 47 47 H 1.09005 * 109.46942 * 60.00676 * 29 28 26 48 48 H 1.09000 * 109.47524 * 300.00032 * 29 28 26 49 49 H 1.09001 * 109.46910 * 179.97438 * 29 28 26 50 50 H 1.08996 * 109.47729 * 265.97949 * 30 28 26 51 51 H 1.09007 * 109.47316 * 25.97934 * 30 28 26 52 52 H 1.09004 * 109.47050 * 145.97269 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0483 -0.0011 7 6 5.3527 3.0483 -0.0010 8 8 5.9591 1.9980 -0.0009 9 7 6.0266 4.2154 -0.0009 10 6 7.4916 4.2155 -0.0002 11 1 7.9164 3.2960 -0.4030 12 6 8.1091 4.6440 1.3456 13 1 7.4818 4.4537 2.2164 14 6 9.5395 4.1221 1.5035 15 6 10.3670 5.1371 2.2951 16 6 10.4786 6.4279 1.4825 17 7 9.1467 6.9390 1.1773 18 6 8.9379 8.2913 1.2312 19 1 8.2922 8.7673 0.5081 20 6 9.5562 9.0504 2.2153 21 7 9.7656 10.3352 2.0210 22 14 10.0911 8.2483 3.8153 23 1 11.4352 7.6419 3.6399 24 1 10.1467 9.2733 4.8884 25 1 9.1166 7.1922 4.1896 26 6 8.0332 6.0807 0.8188 27 1 7.0697 6.5429 1.0338 28 6 8.1088 5.4929 -0.5960 29 6 7.2022 6.2008 -1.6049 30 6 9.5383 5.3063 -1.1084 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 3.9877 0.9298 -0.0005 37 1 3.4826 3.5624 0.8889 38 1 3.4821 3.5619 -0.8910 39 1 5.5416 5.0555 -0.0006 40 1 9.9846 3.9790 0.5189 41 1 9.5230 3.1716 2.0367 42 1 11.3628 4.7332 2.4773 43 1 9.8764 5.3456 3.2459 44 1 11.0107 6.2257 0.5529 45 1 11.0282 7.1713 2.0599 46 1 10.1979 10.8655 2.7086 47 1 7.4861 7.2510 -1.6741 48 1 6.1654 6.1255 -1.2771 49 1 7.3098 5.7307 -2.5824 50 1 9.8345 6.1819 -1.6861 51 1 10.2145 5.1836 -0.2623 52 1 9.5845 4.4204 -1.7418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316720149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:59 Heat of formation + Delta-G solvation = -15.701729 kcal Electronic energy + Delta-G solvation = -30882.279309 eV Core-core repulsion = 26883.666312 eV Total energy + Delta-G solvation = -3998.612996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.22138 -40.15497 -39.00667 -35.73343 -34.66386 -33.42119 -33.10403 -32.86551 -31.05792 -30.16271 -28.52322 -27.09168 -25.56142 -25.02005 -24.00232 -22.50960 -21.48950 -20.72740 -20.58422 -19.59366 -18.14025 -17.65019 -17.05330 -16.56443 -16.37572 -16.30076 -15.78179 -15.42632 -15.32310 -14.55540 -14.34900 -14.15654 -13.83074 -13.71329 -13.43496 -13.36695 -13.02372 -12.70280 -12.66099 -12.63170 -12.41795 -12.17962 -12.07980 -11.98431 -11.83115 -11.66772 -11.50031 -11.43734 -10.99219 -10.77511 -10.58842 -10.51587 -10.20848 -10.15148 -10.06123 -9.96491 -9.59947 -9.51493 -9.45358 -9.25897 -8.84489 -8.44062 -6.76654 -6.06308 -3.46733 2.32696 2.41993 2.59401 3.26578 3.26713 3.43628 3.47544 4.37452 4.46887 4.51149 4.73087 4.74648 4.75145 4.85682 4.94518 5.06316 5.08037 5.12454 5.23653 5.27032 5.32660 5.46422 5.46799 5.58145 5.59717 5.68486 5.78615 5.86926 5.88843 5.91232 5.97873 6.02731 6.08769 6.14138 6.21190 6.31154 6.32679 6.32993 6.39187 6.51116 6.57325 6.66776 6.74787 6.79953 6.92847 7.04090 7.19418 7.38806 7.92233 8.01728 8.03066 8.36483 8.99588 9.68010 10.05171 11.08764 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018416 B = 0.002631 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.026125 B =10639.649057 C =10837.474218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.542 6.542 5 N -0.719 5.719 6 C 0.098 3.902 7 C 0.510 3.490 8 O -0.543 6.543 9 N -0.699 5.699 10 C 0.127 3.873 11 H 0.099 0.901 12 C -0.136 4.136 13 H 0.072 0.928 14 C -0.105 4.105 15 C -0.143 4.143 16 C 0.127 3.873 17 N -0.580 5.580 18 C -0.277 4.277 19 H 0.079 0.921 20 C 0.038 3.962 21 N -0.896 5.896 22 Si 0.875 3.125 23 H -0.280 1.280 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.186 3.814 27 H 0.080 0.920 28 C -0.112 4.112 29 C -0.128 4.128 30 C -0.138 4.138 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.412 0.588 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.405 0.595 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.067 0.933 46 H 0.263 0.737 47 H 0.065 0.935 48 H 0.045 0.955 49 H 0.045 0.955 50 H 0.059 0.941 51 H 0.091 0.909 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.645 -18.728 -5.022 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.299 3.701 4 O -0.419 6.419 5 N -0.375 5.375 6 C -0.030 4.030 7 C 0.296 3.704 8 O -0.421 6.421 9 N -0.349 5.349 10 C 0.021 3.979 11 H 0.117 0.883 12 C -0.158 4.158 13 H 0.091 0.909 14 C -0.143 4.143 15 C -0.182 4.182 16 C 0.002 3.998 17 N -0.299 5.299 18 C -0.405 4.405 19 H 0.096 0.904 20 C -0.163 4.163 21 N -0.536 5.536 22 Si 0.705 3.295 23 H -0.208 1.208 24 H -0.232 1.232 25 H -0.196 1.196 26 C 0.077 3.923 27 H 0.098 0.902 28 C -0.116 4.116 29 C -0.185 4.185 30 C -0.194 4.194 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.250 0.750 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.242 0.758 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.078 0.922 51 H 0.109 0.891 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.698 -18.609 -4.947 21.559 hybrid contribution 0.407 -0.175 1.067 1.155 sum -9.291 -18.784 -3.881 21.312 Atomic orbital electron populations 1.21536 0.92866 1.01654 1.03438 1.21617 0.98685 0.93366 1.04620 1.20834 0.81541 0.92169 0.75550 1.90719 1.55296 1.46542 1.49369 1.45773 1.07692 1.08246 1.75810 1.21072 0.91269 0.85647 1.05008 1.20441 0.89487 0.84341 0.76142 1.90680 1.69882 1.31216 1.50296 1.45693 1.07436 1.08243 1.73553 1.22290 0.78193 0.99518 0.97857 0.88345 1.23316 0.96578 0.99329 0.96554 0.90927 1.21519 0.94034 0.97476 1.01231 1.21950 0.99149 0.97312 0.99777 1.21268 0.87749 0.93870 0.96895 1.43424 1.03467 1.03471 1.79552 1.18821 1.30424 0.80888 1.10386 0.90356 1.25511 0.98250 0.94877 0.97696 1.69898 1.42761 1.06972 1.33959 0.87170 0.78584 0.78509 0.85235 1.20781 1.23222 1.19556 1.21402 0.92114 0.88169 0.90650 0.90200 1.22936 0.95750 0.94367 0.98532 1.21605 0.97949 1.01205 0.97784 1.22043 0.95178 1.00426 1.01789 0.91918 0.91940 0.92004 0.88738 0.88726 0.75005 0.88244 0.88292 0.75815 0.90165 0.92900 0.92158 0.92110 0.94806 0.91535 0.92670 0.91606 0.93617 0.93608 0.92184 0.89114 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.60 16 2 C -0.14 -0.93 6.42 -27.88 -0.18 -1.11 16 3 C 0.51 5.16 7.83 -10.98 -0.09 5.08 16 4 O -0.54 -7.44 15.98 5.56 0.09 -7.36 16 5 N -0.72 -6.84 5.53 -61.48 -0.34 -7.18 16 6 C 0.10 0.95 6.15 -5.20 -0.03 0.92 16 7 C 0.51 6.03 7.90 -10.99 -0.09 5.94 16 8 O -0.54 -7.92 15.27 5.55 0.08 -7.84 16 9 N -0.70 -8.24 4.67 -52.79 -0.25 -8.48 16 10 C 0.13 1.77 3.34 -66.89 -0.22 1.55 16 11 H 0.10 1.46 7.35 -51.93 -0.38 1.08 16 12 C -0.14 -2.17 4.12 -89.87 -0.37 -2.54 16 13 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 14 C -0.11 -1.61 5.18 -26.68 -0.14 -1.75 16 15 C -0.14 -2.50 5.70 -26.75 -0.15 -2.66 16 16 C 0.13 2.58 4.46 -4.40 -0.02 2.57 16 17 N -0.58 -12.61 2.24 -166.86 -0.37 -12.98 16 18 C -0.28 -7.24 9.74 -15.06 -0.15 -7.39 16 19 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 20 C 0.04 1.04 5.15 -17.43 -0.09 0.95 16 21 N -0.90 -26.39 13.97 55.49 0.78 -25.62 16 22 Si 0.87 21.45 24.34 -169.99 -4.14 17.32 16 23 H -0.28 -6.57 6.25 56.52 0.35 -6.22 16 24 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 25 H -0.27 -6.58 6.70 56.52 0.38 -6.20 16 26 C 0.19 3.35 3.34 -68.38 -0.23 3.12 16 27 H 0.08 1.48 7.88 -51.93 -0.41 1.07 16 28 C -0.11 -1.69 1.34 -153.85 -0.21 -1.89 16 29 C -0.13 -1.78 8.97 37.16 0.33 -1.44 16 30 C -0.14 -2.09 7.36 37.15 0.27 -1.82 16 31 H 0.06 0.50 8.10 -51.93 -0.42 0.07 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.41 3.63 7.44 -40.82 -0.30 3.32 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.41 4.16 6.80 -40.82 -0.28 3.88 16 40 H 0.08 1.16 4.69 -51.93 -0.24 0.92 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 1.17 6.67 -51.93 -0.35 0.82 16 44 H 0.03 0.66 5.84 -51.93 -0.30 0.36 16 45 H 0.07 1.53 3.54 -51.93 -0.18 1.35 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 48 H 0.04 0.54 5.91 -51.93 -0.31 0.24 16 49 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.06 0.97 8.05 -51.93 -0.42 0.56 16 51 H 0.09 1.44 1.95 -51.92 -0.10 1.34 16 52 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 386.52 15.07 5.82 5.82 Total: -1.00 -32.02 386.52 -7.73 -39.75 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -8.40 Total: 7.63 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.01 Total: -1.06 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.18 Total: -54.26 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.17 Total: -15.19 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.14 Total: 17.32 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.02 -7.73 -39.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316720149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.048 kcal (2) G-P(sol) polarization free energy of solvation -32.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds