Wall clock time and date at job start Tue Mar 31 2020 19:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47307 * 2 1 4 4 O 1.21282 * 119.99382 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00137 * 179.97438 * 3 2 1 6 6 C 1.46497 * 119.99893 * 179.72629 * 5 3 2 7 7 C 1.50695 * 109.47051 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00349 * 359.97438 * 7 6 5 9 9 N 1.34787 * 119.99901 * 179.97438 * 7 6 5 10 10 C 1.46493 * 119.99618 * 179.97438 * 9 7 6 11 11 H 1.08995 * 113.23039 * 25.33565 * 10 9 7 12 12 C 1.50018 * 114.12475 * 252.52230 * 10 9 7 13 13 H 1.09003 * 112.50489 * 170.15921 * 12 10 9 14 14 C 1.51200 * 126.15843 * 27.76190 * 12 10 9 15 15 C 1.55154 * 105.66974 * 198.21978 * 14 12 10 16 16 C 1.52504 * 112.59148 * 55.75523 * 15 14 12 17 17 N 1.48413 * 111.86177 * 313.00412 * 16 15 14 18 18 C 1.36940 * 123.16676 * 231.81451 * 17 16 15 19 19 H 1.08002 * 119.99553 * 153.59136 * 18 17 16 20 20 C 1.38811 * 120.00083 * 333.59368 * 18 17 16 21 21 N 1.31614 * 120.00124 * 348.56157 * 20 18 17 22 22 Si 1.86799 * 119.99856 * 168.55533 * 20 18 17 23 23 H 1.48499 * 109.46879 * 60.00154 * 22 20 18 24 24 H 1.48499 * 109.47358 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47266 * 300.00318 * 22 20 18 26 26 C 1.45374 * 113.66501 * 51.84561 * 17 16 15 27 27 H 1.09001 * 112.09072 * 59.73936 * 26 17 16 28 28 C 1.50551 * 126.27947 * 204.13502 * 26 17 16 29 29 C 1.53002 * 114.02337 * 25.72436 * 28 26 17 30 30 C 1.52997 * 114.29822 * 253.14604 * 28 26 17 31 31 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47532 * 300.00058 * 1 2 3 33 33 H 1.09002 * 109.46610 * 60.00650 * 1 2 3 34 34 H 1.08999 * 109.47532 * 239.99942 * 2 1 3 35 35 H 1.09006 * 109.47082 * 119.99271 * 2 1 3 36 36 H 0.96997 * 120.00182 * 359.97438 * 5 3 2 37 37 H 1.09008 * 109.46978 * 299.99704 * 6 5 3 38 38 H 1.09002 * 109.47460 * 59.99539 * 6 5 3 39 39 H 0.97003 * 119.99695 * 359.97438 * 9 7 6 40 40 H 1.09000 * 110.10602 * 317.75717 * 14 12 10 41 41 H 1.09005 * 110.10056 * 79.42048 * 14 12 10 42 42 H 1.08996 * 109.04352 * 294.84310 * 15 14 12 43 43 H 1.08998 * 108.63639 * 176.37769 * 15 14 12 44 44 H 1.09000 * 109.00139 * 192.39504 * 16 15 14 45 45 H 1.09001 * 109.00424 * 73.61843 * 16 15 14 46 46 H 0.97001 * 120.00139 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.46597 * 145.36820 * 29 28 26 48 48 H 1.08996 * 109.47154 * 265.35987 * 29 28 26 49 49 H 1.08994 * 109.47491 * 25.36824 * 29 28 26 50 50 H 1.09005 * 109.47121 * 306.20392 * 30 28 26 51 51 H 1.09004 * 109.46984 * 66.20414 * 30 28 26 52 52 H 1.08995 * 109.47300 * 186.20444 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0483 -0.0055 7 6 5.3527 3.0483 -0.0042 8 8 5.9592 1.9980 0.0017 9 7 6.0266 4.2156 -0.0096 10 6 7.4916 4.2155 -0.0078 11 1 7.9220 3.3079 -0.4310 12 6 8.1031 4.6337 1.2967 13 1 9.1791 4.4622 1.3270 14 6 7.4801 4.4758 2.6653 15 6 8.2526 5.4510 3.5924 16 6 8.2309 6.8872 3.0802 17 7 8.5552 6.9632 1.6339 18 6 9.5202 7.7908 1.1249 19 1 10.0167 7.5364 0.2002 20 6 9.8602 8.9564 1.7976 21 7 9.1124 9.3840 2.7927 22 14 11.3792 9.9181 1.2905 23 1 11.2439 10.3470 -0.1248 24 1 11.5208 11.1141 2.1593 25 1 12.5808 9.0575 1.4341 26 6 7.7513 6.0768 0.8084 27 1 6.6863 6.2938 0.8906 28 6 8.1290 5.5322 -0.5434 29 6 9.6380 5.4442 -0.7801 30 6 7.3688 6.1638 -1.7113 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 3.9878 0.9299 0.0013 37 1 3.4836 3.5578 -0.8986 38 1 3.4812 3.5665 0.8814 39 1 5.5416 5.0556 -0.0148 40 1 6.4225 4.7371 2.6280 41 1 7.6019 3.4511 3.0164 42 1 9.2884 5.1210 3.6715 43 1 7.7982 5.4236 4.5828 44 1 8.9601 7.4742 3.6386 45 1 7.2387 7.3076 3.2440 46 1 9.3502 10.1984 3.2629 47 1 9.8595 4.5686 -1.3904 48 1 9.9779 6.3421 -1.2961 49 1 10.1517 5.3590 0.1775 50 1 6.2965 6.0877 -1.5306 51 1 7.6484 7.2135 -1.8017 52 1 7.6198 5.6403 -2.6338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316720158.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:05 Heat of formation + Delta-G solvation = -11.120213 kcal Electronic energy + Delta-G solvation = -30907.818423 eV Core-core repulsion = 26909.404096 eV Total energy + Delta-G solvation = -3998.414327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -41.28484 -40.08103 -38.83905 -35.35180 -34.61670 -33.46607 -33.07760 -32.89370 -30.26963 -29.46555 -28.40091 -27.08389 -25.84183 -24.78473 -23.94105 -22.42763 -20.96021 -20.61348 -20.49932 -19.22042 -18.39159 -17.84483 -16.80868 -16.37330 -16.28916 -16.22608 -15.33702 -15.13083 -14.80641 -14.30425 -14.08318 -14.00189 -13.84320 -13.71679 -13.47500 -13.27154 -12.82916 -12.63601 -12.59777 -12.56846 -12.40895 -12.10090 -12.04773 -11.81783 -11.46748 -11.38776 -11.17720 -11.11492 -10.88282 -10.69063 -10.48733 -10.29018 -10.16520 -10.12766 -10.04014 -9.93650 -9.88534 -9.40904 -9.33634 -8.92869 -8.78334 -8.43647 -6.60252 -5.77254 -3.21800 2.37773 2.49480 2.64554 3.32241 3.35521 3.41628 3.42140 4.42522 4.46212 4.57309 4.63836 4.78029 4.78463 4.91798 5.06508 5.12235 5.15524 5.23651 5.27633 5.43058 5.49723 5.52288 5.62820 5.72699 5.81382 5.84025 5.88051 5.91038 5.97266 6.00426 6.07138 6.22442 6.23553 6.32951 6.34423 6.39958 6.52336 6.55055 6.59329 6.70418 6.75342 6.83273 6.98531 7.09018 7.24164 7.39450 7.45402 7.68490 7.79099 7.96709 8.09660 8.40064 9.16474 9.82054 10.46885 11.30233 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.002585 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.813220 B =10830.936301 C =11170.039307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.512 3.488 4 O -0.543 6.543 5 N -0.719 5.719 6 C 0.098 3.902 7 C 0.512 3.488 8 O -0.542 6.542 9 N -0.695 5.695 10 C 0.141 3.859 11 H 0.096 0.904 12 C -0.172 4.172 13 H 0.100 0.900 14 C -0.084 4.084 15 C -0.136 4.136 16 C 0.165 3.835 17 N -0.571 5.571 18 C -0.242 4.242 19 H 0.076 0.924 20 C -0.001 4.001 21 N -0.908 5.908 22 Si 0.901 3.099 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.151 3.849 27 H 0.044 0.956 28 C -0.068 4.068 29 C -0.117 4.117 30 C -0.133 4.133 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.412 0.588 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.404 0.596 40 H 0.049 0.951 41 H 0.041 0.959 42 H 0.050 0.950 43 H 0.047 0.953 44 H 0.094 0.906 45 H 0.013 0.987 46 H 0.253 0.747 47 H 0.043 0.957 48 H 0.063 0.937 49 H 0.076 0.924 50 H 0.047 0.953 51 H 0.064 0.936 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 -15.771 -5.863 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.299 3.701 4 O -0.420 6.420 5 N -0.374 5.374 6 C -0.030 4.030 7 C 0.297 3.703 8 O -0.420 6.420 9 N -0.346 5.346 10 C 0.035 3.965 11 H 0.114 0.886 12 C -0.193 4.193 13 H 0.118 0.882 14 C -0.122 4.122 15 C -0.175 4.175 16 C 0.040 3.960 17 N -0.292 5.292 18 C -0.371 4.371 19 H 0.094 0.906 20 C -0.199 4.199 21 N -0.553 5.553 22 Si 0.731 3.269 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.042 3.958 27 H 0.061 0.939 28 C -0.069 4.069 29 C -0.175 4.175 30 C -0.191 4.191 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.250 0.750 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.241 0.759 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.031 0.969 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.082 0.918 49 H 0.095 0.905 50 H 0.066 0.934 51 H 0.083 0.917 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.061 -15.617 -5.745 19.445 hybrid contribution 0.873 0.830 -0.062 1.206 sum -9.187 -14.787 -5.808 18.352 Atomic orbital electron populations 1.21535 0.92893 1.01627 1.03425 1.21619 0.98659 0.93398 1.04614 1.20828 0.81558 0.92151 0.75572 1.90717 1.55297 1.46551 1.49410 1.45767 1.07671 1.08264 1.75744 1.21067 0.91371 0.85603 1.04946 1.20391 0.89397 0.84308 0.76192 1.90676 1.69846 1.31200 1.50299 1.45643 1.07216 1.08191 1.73543 1.21565 0.78457 0.98473 0.97992 0.88591 1.23324 1.00671 1.02229 0.93078 0.88191 1.21208 0.98419 0.97713 0.94879 1.22293 0.99142 0.98741 0.97312 1.20879 0.99678 0.90806 0.84616 1.43911 1.38757 1.46130 1.00450 1.19256 1.11294 0.98745 1.07803 0.90647 1.25101 0.98918 0.96465 0.99410 1.69931 1.37754 1.23216 1.24441 0.86396 0.83225 0.79448 0.77850 1.20986 1.21737 1.21088 1.21846 0.93469 0.89590 0.90845 0.93918 1.21997 0.96455 0.93658 0.94767 1.21639 0.92475 1.00723 1.02623 1.21667 0.98944 1.01299 0.97141 0.92023 0.91915 0.91963 0.88759 0.88717 0.75000 0.88392 0.88264 0.75918 0.93197 0.94048 0.93146 0.93472 0.88812 0.96889 0.93671 0.93802 0.91779 0.90517 0.93389 0.91714 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.14 -0.97 6.42 -27.88 -0.18 -1.15 16 3 C 0.51 5.33 7.83 -10.98 -0.09 5.25 16 4 O -0.54 -7.63 15.98 5.56 0.09 -7.54 16 5 N -0.72 -7.12 5.53 -61.47 -0.34 -7.46 16 6 C 0.10 1.00 6.15 -5.20 -0.03 0.97 16 7 C 0.51 6.32 7.90 -10.98 -0.09 6.24 16 8 O -0.54 -8.18 15.30 5.56 0.09 -8.10 16 9 N -0.69 -8.68 4.29 -57.64 -0.25 -8.93 16 10 C 0.14 2.06 3.92 -71.81 -0.28 1.78 16 11 H 0.10 1.47 7.52 -51.93 -0.39 1.08 16 12 C -0.17 -2.89 2.94 -95.22 -0.28 -3.17 16 13 H 0.10 1.82 6.11 -51.93 -0.32 1.51 16 14 C -0.08 -1.43 6.01 -26.50 -0.16 -1.58 16 15 C -0.14 -2.54 5.93 -25.85 -0.15 -2.70 16 16 C 0.17 3.77 5.32 -3.24 -0.02 3.75 16 17 N -0.57 -13.13 2.86 -169.06 -0.48 -13.61 16 18 C -0.24 -6.11 9.05 -15.06 -0.14 -6.25 16 19 H 0.08 1.83 5.21 -52.49 -0.27 1.56 16 20 C 0.00 -0.03 5.16 -17.43 -0.09 -0.12 16 21 N -0.91 -25.49 10.92 55.49 0.61 -24.88 16 22 Si 0.90 21.07 29.57 -169.99 -5.03 16.05 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.15 2.81 2.93 -71.84 -0.21 2.60 16 27 H 0.04 0.81 6.56 -51.93 -0.34 0.47 16 28 C -0.07 -1.06 1.40 -158.26 -0.22 -1.28 16 29 C -0.12 -1.87 7.29 37.16 0.27 -1.60 16 30 C -0.13 -1.86 9.13 37.16 0.34 -1.52 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.41 3.79 7.44 -40.82 -0.30 3.48 16 37 H 0.10 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.40 4.58 6.24 -40.82 -0.25 4.33 16 40 H 0.05 0.83 7.97 -51.93 -0.41 0.41 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 2.43 6.02 -51.93 -0.31 2.12 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 47 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 1.06 7.08 -51.93 -0.37 0.69 16 49 H 0.08 1.37 5.69 -51.93 -0.30 1.07 16 50 H 0.05 0.59 6.50 -51.93 -0.34 0.26 16 51 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 52 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -30.94 396.90 -8.97 -39.91 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -8.66 Total: 7.97 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -0.98 Total: 0.60 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.46 Total: -54.88 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.17 Total: -15.63 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.94 -8.97 -39.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316720158.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.790 kcal (2) G-P(sol) polarization free energy of solvation -30.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds