Wall clock time and date at job start Tue Mar 31 2020 19:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.47307 * 2 1 4 4 O 1.21282 * 119.99382 * 359.97438 * 3 2 1 5 5 N 1.34776 * 120.00137 * 179.97438 * 3 2 1 6 6 C 1.46497 * 119.99893 * 179.72629 * 5 3 2 7 7 C 1.50695 * 109.47051 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00349 * 359.97438 * 7 6 5 9 9 N 1.34787 * 119.99901 * 179.97438 * 7 6 5 10 10 C 1.46493 * 119.99618 * 179.97438 * 9 7 6 11 11 H 1.08995 * 113.23039 * 25.33565 * 10 9 7 12 12 C 1.50018 * 114.12475 * 252.52230 * 10 9 7 13 13 H 1.09003 * 112.50489 * 170.15921 * 12 10 9 14 14 C 1.51200 * 126.15843 * 27.76190 * 12 10 9 15 15 C 1.55154 * 105.66974 * 198.21978 * 14 12 10 16 16 C 1.52504 * 112.59148 * 55.75523 * 15 14 12 17 17 N 1.48413 * 111.86177 * 313.00412 * 16 15 14 18 18 C 1.36940 * 123.16676 * 231.81451 * 17 16 15 19 19 H 1.08002 * 119.99553 * 153.59136 * 18 17 16 20 20 C 1.38811 * 120.00083 * 333.59368 * 18 17 16 21 21 N 1.31614 * 120.00124 * 348.56157 * 20 18 17 22 22 Si 1.86799 * 119.99856 * 168.55533 * 20 18 17 23 23 H 1.48499 * 109.46879 * 60.00154 * 22 20 18 24 24 H 1.48499 * 109.47358 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47266 * 300.00318 * 22 20 18 26 26 C 1.45374 * 113.66501 * 51.84561 * 17 16 15 27 27 H 1.09001 * 112.09072 * 59.73936 * 26 17 16 28 28 C 1.50551 * 126.27947 * 204.13502 * 26 17 16 29 29 C 1.53002 * 114.02337 * 25.72436 * 28 26 17 30 30 C 1.52997 * 114.29822 * 253.14604 * 28 26 17 31 31 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47532 * 300.00058 * 1 2 3 33 33 H 1.09002 * 109.46610 * 60.00650 * 1 2 3 34 34 H 1.08999 * 109.47532 * 239.99942 * 2 1 3 35 35 H 1.09006 * 109.47082 * 119.99271 * 2 1 3 36 36 H 0.96997 * 120.00182 * 359.97438 * 5 3 2 37 37 H 1.09008 * 109.46978 * 299.99704 * 6 5 3 38 38 H 1.09002 * 109.47460 * 59.99539 * 6 5 3 39 39 H 0.97003 * 119.99695 * 359.97438 * 9 7 6 40 40 H 1.09000 * 110.10602 * 317.75717 * 14 12 10 41 41 H 1.09005 * 110.10056 * 79.42048 * 14 12 10 42 42 H 1.08996 * 109.04352 * 294.84310 * 15 14 12 43 43 H 1.08998 * 108.63639 * 176.37769 * 15 14 12 44 44 H 1.09000 * 109.00139 * 192.39504 * 16 15 14 45 45 H 1.09001 * 109.00424 * 73.61843 * 16 15 14 46 46 H 0.97001 * 120.00139 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.46597 * 145.36820 * 29 28 26 48 48 H 1.08996 * 109.47154 * 265.35987 * 29 28 26 49 49 H 1.08994 * 109.47491 * 25.36824 * 29 28 26 50 50 H 1.09005 * 109.47121 * 306.20392 * 30 28 26 51 51 H 1.09004 * 109.46984 * 66.20414 * 30 28 26 52 52 H 1.08995 * 109.47300 * 186.20444 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8458 3.0483 -0.0055 7 6 5.3527 3.0483 -0.0042 8 8 5.9592 1.9980 0.0017 9 7 6.0266 4.2156 -0.0096 10 6 7.4916 4.2155 -0.0078 11 1 7.9220 3.3079 -0.4310 12 6 8.1031 4.6337 1.2967 13 1 9.1791 4.4622 1.3270 14 6 7.4801 4.4758 2.6653 15 6 8.2526 5.4510 3.5924 16 6 8.2309 6.8872 3.0802 17 7 8.5552 6.9632 1.6339 18 6 9.5202 7.7908 1.1249 19 1 10.0167 7.5364 0.2002 20 6 9.8602 8.9564 1.7976 21 7 9.1124 9.3840 2.7927 22 14 11.3792 9.9181 1.2905 23 1 11.2439 10.3470 -0.1248 24 1 11.5208 11.1141 2.1593 25 1 12.5808 9.0575 1.4341 26 6 7.7513 6.0768 0.8084 27 1 6.6863 6.2938 0.8906 28 6 8.1290 5.5322 -0.5434 29 6 9.6380 5.4442 -0.7801 30 6 7.3688 6.1638 -1.7113 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3632 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8901 36 1 3.9878 0.9299 0.0013 37 1 3.4836 3.5578 -0.8986 38 1 3.4812 3.5665 0.8814 39 1 5.5416 5.0556 -0.0148 40 1 6.4225 4.7371 2.6280 41 1 7.6019 3.4511 3.0164 42 1 9.2884 5.1210 3.6715 43 1 7.7982 5.4236 4.5828 44 1 8.9601 7.4742 3.6386 45 1 7.2387 7.3076 3.2440 46 1 9.3502 10.1984 3.2629 47 1 9.8595 4.5686 -1.3904 48 1 9.9779 6.3421 -1.2961 49 1 10.1517 5.3590 0.1775 50 1 6.2965 6.0877 -1.5306 51 1 7.6484 7.2135 -1.8017 52 1 7.6198 5.6403 -2.6338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316720158.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:04 Heat of formation + Delta-G solvation = -31.088324 kcal Electronic energy + Delta-G solvation = -30908.684305 eV Core-core repulsion = 26909.404096 eV Total energy + Delta-G solvation = -3999.280209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.58719 -40.98499 -39.88544 -36.93405 -35.49579 -34.76461 -34.48641 -33.66510 -32.04706 -30.82708 -29.35513 -28.34737 -27.48014 -26.18024 -24.77430 -23.95550 -22.29431 -21.83714 -21.36822 -20.62262 -19.74445 -18.72958 -18.50259 -17.33635 -17.29279 -17.08386 -16.65710 -16.25000 -16.17436 -15.67920 -15.40898 -15.30349 -15.21359 -14.91707 -14.54859 -14.36361 -14.16242 -14.08396 -13.91002 -13.61046 -13.44546 -13.19191 -13.11947 -12.87726 -12.80519 -12.74034 -12.60905 -12.41533 -12.27798 -12.10999 -11.99803 -11.92703 -11.66013 -11.60191 -11.40483 -11.08880 -10.99150 -10.90728 -10.57253 -10.25675 -10.23175 -9.95985 -8.48272 -7.76022 -5.21902 1.46766 1.47629 1.49343 1.54595 1.63644 1.74996 2.44829 2.54939 3.28876 3.38953 3.48076 3.55637 3.72556 3.84754 3.95094 4.14754 4.25198 4.25959 4.27027 4.34122 4.37646 4.38136 4.49018 4.58373 4.64167 4.73996 4.76917 4.78348 4.87467 4.98743 5.03011 5.03856 5.09610 5.11700 5.14082 5.18314 5.22684 5.25007 5.32399 5.35491 5.40906 5.50225 5.56243 5.58028 5.76044 5.78441 5.82984 6.42640 6.45392 6.49479 7.08717 7.19088 7.20544 7.92212 8.55231 9.28906 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021737 B = 0.002585 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.813220 B =10830.936301 C =11170.039307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.508 3.492 4 O -0.585 6.585 5 N -0.715 5.715 6 C 0.101 3.899 7 C 0.520 3.480 8 O -0.566 6.566 9 N -0.691 5.691 10 C 0.162 3.838 11 H 0.100 0.900 12 C -0.161 4.161 13 H 0.087 0.913 14 C -0.077 4.077 15 C -0.126 4.126 16 C 0.172 3.828 17 N -0.587 5.587 18 C -0.233 4.233 19 H 0.085 0.915 20 C -0.061 4.061 21 N -0.943 5.943 22 Si 0.957 3.043 23 H -0.276 1.276 24 H -0.302 1.302 25 H -0.280 1.280 26 C 0.133 3.867 27 H 0.045 0.955 28 C -0.064 4.064 29 C -0.115 4.115 30 C -0.129 4.129 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.418 0.582 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.411 0.589 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.062 0.938 44 H 0.057 0.943 45 H -0.010 1.010 46 H 0.244 0.756 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.053 0.947 50 H 0.063 0.937 51 H 0.045 0.955 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 -18.372 -7.444 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.297 3.703 4 O -0.465 6.465 5 N -0.370 5.370 6 C -0.026 4.026 7 C 0.307 3.693 8 O -0.445 6.445 9 N -0.342 5.342 10 C 0.055 3.945 11 H 0.118 0.882 12 C -0.182 4.182 13 H 0.105 0.895 14 C -0.115 4.115 15 C -0.165 4.165 16 C 0.047 3.953 17 N -0.308 5.308 18 C -0.363 4.363 19 H 0.102 0.898 20 C -0.255 4.255 21 N -0.591 5.591 22 Si 0.786 3.214 23 H -0.202 1.202 24 H -0.229 1.229 25 H -0.207 1.207 26 C 0.026 3.974 27 H 0.062 0.938 28 C -0.066 4.066 29 C -0.172 4.172 30 C -0.187 4.187 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.256 0.744 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.249 0.751 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.008 0.992 46 H 0.053 0.947 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.082 0.918 51 H 0.064 0.936 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.608 -18.257 -7.354 22.359 hybrid contribution 1.021 1.576 0.421 1.924 sum -9.588 -16.681 -6.933 20.451 Atomic orbital electron populations 1.21545 0.93323 1.02689 1.01961 1.21697 0.98191 0.91153 1.06689 1.21507 0.81172 0.93259 0.74367 1.90702 1.56217 1.48113 1.51463 1.45799 1.07769 1.08214 1.75258 1.21054 0.89648 0.86245 1.05703 1.20622 0.90020 0.83603 0.75098 1.90673 1.70513 1.31984 1.51304 1.45562 1.06318 1.08823 1.73546 1.21251 0.79562 0.97836 0.95823 0.88189 1.23245 1.00325 1.00610 0.94059 0.89454 1.21134 0.98279 0.97691 0.94352 1.22124 0.99497 0.96424 0.98454 1.20668 0.97053 0.92772 0.84812 1.44094 1.39315 1.46247 1.01175 1.19640 1.11082 0.98223 1.07315 0.89754 1.25775 1.01563 0.97941 1.00196 1.70108 1.39445 1.23504 1.26038 0.85489 0.80594 0.77852 0.77452 1.20200 1.22878 1.20656 1.22158 0.92936 0.89302 0.93026 0.93801 1.22009 0.96752 0.93850 0.93956 1.21579 0.92349 1.01576 1.01739 1.21638 0.99670 1.00128 0.97245 0.89641 0.93511 0.93350 0.86424 0.86639 0.74373 0.87224 0.87926 0.75083 0.92633 0.92568 0.93626 0.91956 0.92465 0.99201 0.94683 0.91031 0.92682 0.92809 0.91809 0.93602 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.20 71.98 0.66 -1.05 16 2 C -0.14 -1.49 6.42 29.85 0.19 -1.30 16 3 C 0.51 9.64 7.83 87.66 0.69 10.33 16 4 O -0.58 -15.91 15.98 -3.03 -0.05 -15.96 16 5 N -0.72 -12.48 5.53 -466.78 -2.58 -15.06 16 6 C 0.10 1.84 6.15 85.63 0.53 2.37 16 7 C 0.52 11.41 7.90 87.65 0.69 12.10 16 8 O -0.57 -15.42 15.30 -3.02 -0.05 -15.47 16 9 N -0.69 -15.40 4.29 -454.66 -1.95 -17.35 16 10 C 0.16 4.31 3.92 42.48 0.17 4.48 16 11 H 0.10 2.72 7.52 -2.39 -0.02 2.71 16 12 C -0.16 -5.17 2.94 -13.78 -0.04 -5.21 16 13 H 0.09 3.08 6.11 -2.39 -0.01 3.07 16 14 C -0.08 -2.46 6.01 30.74 0.18 -2.28 16 15 C -0.13 -4.68 5.93 31.17 0.18 -4.50 16 16 C 0.17 8.10 5.32 85.85 0.46 8.56 16 17 N -0.59 -27.34 2.86 -688.79 -1.97 -29.31 16 18 C -0.23 -11.92 9.05 84.03 0.76 -11.16 16 19 H 0.09 4.10 5.21 -2.91 -0.02 4.08 16 20 C -0.06 -3.31 5.16 84.86 0.44 -2.87 16 21 N -0.94 -55.10 10.92 21.65 0.24 -54.86 16 22 Si 0.96 44.27 29.57 68.60 2.03 46.30 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 C 0.13 4.84 2.93 43.06 0.13 4.97 16 27 H 0.04 1.62 6.56 -2.39 -0.02 1.60 16 28 C -0.06 -1.90 1.40 -54.61 -0.08 -1.97 16 29 C -0.12 -3.48 7.29 71.98 0.52 -2.95 16 30 C -0.13 -3.32 9.13 71.98 0.66 -2.66 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 33 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 34 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.12 0.81 8.14 -2.38 -0.02 0.80 16 36 H 0.42 6.54 7.44 -92.71 -0.69 5.85 16 37 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.41 8.25 6.24 -92.71 -0.58 7.67 16 40 H 0.05 1.72 7.97 -2.39 -0.02 1.70 16 41 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.06 3.11 6.02 -2.39 -0.01 3.10 16 45 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 47 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.05 1.74 7.08 -2.39 -0.02 1.73 16 49 H 0.05 1.87 5.69 -2.39 -0.01 1.86 16 50 H 0.06 1.41 6.50 -2.38 -0.02 1.39 16 51 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -68.75 396.90 1.48 -67.28 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: -0.33 Total: 27.59 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: 6.14 Total: 6.85 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -6.27 Total: -116.58 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.09 Total: -31.43 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -68.75 1.48 -67.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316720158.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.187 kcal (2) G-P(sol) polarization free energy of solvation -68.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds